LOC122349987 (LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598)


Basic Information

Item Value
gene id LOC122349987
gene name LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 723145 ~ 731844 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU88767
attataaacacCACTGGAGCGACGTTCTCACCGGACTCTTGCAGGGAGCCGCCGTGGCACTGTTTACTGTGTACTTCGTATCGGACCTGTTCAGCCCCAGACGCACCTCCGATAAAGACGAGGAGATCTCGCACACCAGTCTTCAGGAGACGTCAGATCCTCCCAACCACTACGGCAGCACGGAGTGAGACCAAGCGCACTGGACACGGAAGGAGATGAAACACGGAACATCCTTACAGTAACACGCAGTCCTTTCCACAACAGAGTCACTGTTTTGTTACCGGCGaggaaaaaaagtttcattttccTAATGCACGGCGGTAGAGAAAACTCAATGTCATTGTGATAAATACAGCGGCGGTAAAACATTATTTGCTTTGCAGCGGCTGAAtgtgtgtctctggagcacGGACGCAGTCCTGAGAGAGACGCTGTTTTTGTAGAAATAGAcagcaatacattttatgggtcacagttatacatttttcttttatgccaaataataggatattatgtaaaaatcGTCTTCCATAGAGATAGTttaagtaatatgcattgctaaggacttcatttagacaactttgatggtgattttttttttgcaccctcagattccagatataacaaaccatgcatcaacAGAAAGCTTCCCTATTCGGCTTTAAAATGTGAGATTTCAAGAAATTGACCATTAcggctggttttgtgctccagggtcacatatacacacactcccAGTTATTGCACTGAACGTGGCAGTGTAAAAATAGAGACCTCATAGGGTTATTTATTCCCCTCAAGGTCCCTGCTCAGAGTTTATGCAGAGGCAGTGAATCATGAACATCATTGGGAATGGTGCAGTACAAGAAcacggaagaaagaaaaacattcccATCATGCCACTAAACTTGAACTTTTGCTGCGGTGCACTCCGAGCAGCGAGCGCTTTAGATCCTACTGGGCTTTCAGGAATCCAGACTGCTGTTTTTCCCAAATCAGATCAAACGATGAAGAACCTTTTACGTGCATGGGACCTGTTCCATTGCATTAAGGTTTTTTAGACTATTAATGTTCTTCAGGTTAAGAAAAGATGGTTTAGTGAATGgttcgggttttttttttttatgcatccaTATCTATCGAACAATTCAACATTTCTGtcttataatattaataaccaaCACGAGTGTAAATGTCTTATTTCAGCaaggatgtttttaaatgtgaaatgaagaCGGTTGCAACCAACGGACTGTACACTTGACTCtaagacactttattttatgatttacagttgttttaaaGGTAATGTTTTTGCATCAAATTGTCATGAGAAAAAGGAAAGTATGTAAGGGCCAAAAACGAACAACCAAAGTGTCTCATAGCATTGaatgaaacaattttttatgtattgttattgttttttgtatgcaaaggGTTGTTTAATTATGATGTTTAATGCAAACGTTGTTatcgttttatttaatgcaaatggtAAGACCACAAGCTGTAAATATCCAAGCACTTGAATAACAATTTCTGCCTTTAATAGCTTAACGTGTAGCTTTGTATGCATCACGCACAAAGACGTTTTCTTTAGCTGCTTTACTTTTAATTCATTGGCAGCTGTGCTCGTGTCAACCAATGAAATATGGTACTGTAAACGATTCCTTCGCAATTAAAGCTCCGCCGGAC
>TU88852
TCGTGCGATATGAAGTAACCGGAGATAAAACGGAGACGCACGTCGGACCATCGCCTTTAAACGCTCACGATTCACTCCCGTTCACAAAGAAAGACACGGAGCTCGACGAACAGATTATCTCCAGCTTAACTAGTGCGTTCGTGTTAACAAGTCCAAGAGCCgatgtaaataaatgctcagCTATAAGTTCTCCAAAGGCTCCAGAAGTGTGTTGGCGGACCTGAGAATGTTCGAGACTAAAGGGATCTTCAGTGTCTGCGTGGACCTGAGCTGTGTGCTGCTCGCTGGGCTTCCGTTCGCGATATTGAACATTCAGCACACGCCGTTCAAAAGAGGCTTTTTTTGCAGCGACGACTCCATCAGGTACCCCTTTAAAGAAGACACCATCTCCTACCAGTTACTGATGGGAATCATGATTCCTTTCGCGCTGCTGTTGATAGTCTCCGGCGAGTGTTTGACCTTGTATCTGCGCTCCAGAGCTTCTTTCGGCTACGAGTACGTAGCGTGCGTGTATAAGGCCGTGGGGTCTTTCGTGTTCGGAGCGGCGCTGAGCCAGTCCCTGACGGACATCGCCAAGTACACCATCGGCCGGCTGCGACCGCACTTCCTGACCGTGTGCAAGCCGCACTGGAGCCTCATCGACTGTAAATCGGGTTACATCGAGAACTTCACGTGCACTGGAGACGCAGCCGCCGCCAACGAAGGCCGGCTTTCGTTTTATTCTGGCCACTCGTCGTTCTCCATGTACTGTATGCTGTTCCTCGCTctctATCTCCAGTCTAGACTGAGAgcaggtt
>XM_043246159.1
ATCCTGtaatgtgaagctgctttgaaacatcTGTATTCTATGAAcggttttataaataaatgacttgacTTCAGTGTGGCCTGTTTTTACCAGTGTTTCTGGATTGTTGAACGAGAACGCAGAAGCCCTGCTCTGTTTCAGGCATCAGTGACCGtgcagaggaagaggaagcggtGGGCGGGGCTTGCGTAGATGATTGACAGGCGGAGGGATTGACCTCACCATCGTGCGATATGAAGTAACCGGAGATAAAACGGAGACGCACGTCGGACCATCGCCTTTAAACGCTCACGATTCACTCCCGTTCACAAAGAAAGACACGGAGCTCGACGAACAGATTATCTCCAGCTTAACTAGTGCGTTCGTGTTAACAAGTCCAAGAGCCgatgtaaataaatgctcagCTATAAGTTCTCCAAAGGCTCCAGAAGTGTGTTGGCGGACCTGAGAATGTTCGAGACTAAAGGGATCTTCAGTGTCTGCGTGGACCTGAGCTGTGTGCTGCTCGCTGGGCTTCCGTTCGCGATATTGAACATTCAGCACACGCCGTTCAAAAGAGGCTTTTTTTGCAGCGACGACTCCATCAGGTACCCCTTTAAAGAAGACACCATCTCCTACCAGTTACTGATGGGAATCATGATTCCTTTCGCGCTGCTGTTGATAGTCTCCGGCGAGTGTTTGACCTTGTATCTGCGCTCCAGAGCTTCTTTCGGCTACGAGTACGTAGCGTGCGTGTATAAGGCCGTGGGGTCTTTCGTGTTCGGAGCGGCGCTGAGCCAGTCCCTGACGGACATCGCCAAGTACACCATCGGCCGGCTGCGACCGCACTTCCTGACCGTGTGCAAGCCGCACTGGAGCCTCATCGACTGTAAATCGGGTTACATCGAGAACTTCACGTGCACTGGAGACGCAGCCGCCGCCAACGAAGGCCGGCTTTCGTTTTATTCTGGCCACTCGTCGTTCTCCATGTACTGTATGCTGTTCCTCGCTctctATCTCCAGTCTAGACTGAGAgcaggttatatatatatatatatactcacacacTGGTCCGGCCGACTCTGCAGTTCTCTTCATCACAGTACGCACAACAAAGTGTTATTTAacatgtgattaattgtgtgTTTCCAGCTCTATCTCCAGTTAGGTTGGGTGGGTCTGTCGCGCTATctgattataaattataaacacCACTGGAGCGACGTTCTCACCGGACTCTTGCAGGGAGCCGCCGTGGCACTGTTTACTGTGTACTTCGTATCGGACCTGTTCAGCCCCAGACGCACCTCCGATAAAGACGAGGAGATCTCGCACACCAGTCTTCAGGAGACGTCAGATCCTCCCAACCACTACGGCAGCACGGAGTGAGACCAAGCGCACTGGACACGGAAGGAGATGAAACACGGAACATCCTTACAGTAACACGCAGTCCTTTCCACAACAGAGTCACTGTTTTGTTACCGGCGaggaaaaaaagtttcattttccTAATGCACGGCGGTAGAGAAAACTCAATGTCATTGTGATAAATACAGCGGCGGTAAAACATTATTTGCTTTGCAGCGGCTGAAtgtgtgtctctggagcacGGACGCAGTCCTGAGAGAGACGCTGTTTTTGTAGAAATAGAcagcaatacattttatgggtcacagttatacatttttcttttatgccaaataataggatattatgtaaaaatcGTCTTCCATAGAGATAGTttaagtaatatgcattgctaaggacttcatttagacaactttgatggtgattttttttttgcaccctcagattccagatataacaaaccatgcatcaacAGAAAGCTTCCCTATTCGGCTTTAAAATGTGAGATTTCAAGAAATTGACCATTAcggctggttttgtgctccagggtcacatatacacacactcccAGTTATTGCACTGAACGTGGCAGTGTAAAAATAGAGACCTCATAGGGTTATTTATTCCCCTCAAGGTCCCTGCTCAGAGTTTATGCAGAGGCAGTGAATCATGAACATCATTGGGAATGGTGCAGTACAAGAAcacggaagaaagaaaaacattcccATCATGCCACTAAACTTGAACTTTTGCTGCGGTGCACTCCGAGCAGCGAGCGCTTTAGATCCTACTGGGCTTTCAGGAATCCAGACTGCTGTTTTTCCCAAATCAGATCAAACGATGAAGAACCTTTTACGTGCATGGGACCTGTTCCATTGCATTAAGGTTTTTTAGACTATTAATGTTCTTCAGGTTAAGAAAAGATGGTTTAGTGAATGgttcgggttttttttttttatgcatccaTATCTATCGAACAATTCAACATTTCTGtcttataatattaataaccaaCACGAGTGTAAATGTCTTATTTCAGCaaggatgtttttaaatgtgaaatgaagaCGGTTGCAACCAACGGACTGTACACTTGACTCtaagacactttattttatgatttacagttgttttaaaGGTAATGTTTTTGCATCAAATTGTCATGAGAAAAAGGAAAGTATGTAAGGGCCAAAAACGAACAACCAAAGTGTCTCATAGCATTGaatgaaacaattttttatgtattgttattgttttttgtatgcaaaggGTTGTTTAATTATGATGTTTAATGCAAACGTTGTTatcgttttatttaatgcaaatggtAAGACCACAAGCTGTAAATATCCAAGCACTTGAATAACAATTTCTGCCTTTAATAGCTTAACGTGTAGCTTTGTATGCATCACGCACAAAGACGTTTTCTTTAGCTGCTTTACTTTTAATTCATTGGCAGCTGTGCTCGTGTCAACCAATGAAATATGGTACTGTAAACGATTCCTTCGCAATTAAAGCTCCGCCGGACCAACTGTGGTGTAGTTATTGATAATCAACTAATCATCATCATAATTTTGTCCTCGGTGGCGCCTCTAGCGGACAGATTAATCTTCTGTTTTCAAGCTTTGCTCAGTTTGATTCGCTCGGTTCGCTCGGATCGAACCTGTTCAAAACGCGACTCGCGGATCCTGAGCCGAAGCCTTCCCTAGGTACACGCTCCGCGATTCGGTTCCTTTGAATCGCTAAGAAGAACCGAGTCAGCATAGCGAGTTGTTGGCGAATCGAACGCCGCCGCTGTTCTTTGTCCTCGCGGTGACTGACTGCATATGATCCCGCTgaatgtacattatttattcatccgtTTACAGTCTGTGTTCATCAAAGAGAAGATCTGAAGGATGGTGTTAGTTCATGTCGGATATTTGGTTCTTCCTGTCTTTGGCTCAGTGAGAAATAGAGTCTATGGAGGCTGAATCTACATTCTGCATTATCAGAtcattgtgttttaatgatCATCTGTGTTCTGATCCCTCCTCATTTCCTATTTCCATCAGAAGACGACAAACATCTCAGATCTGCTCCCTTCCTGAGAACAAAACACACTAAAACCAGAGCTAACACATTTAGAGCATAAACTACTGTCTGTATGTCAAGTGCTGTAGTTTAACCCACATCAGTAGCTCTAGAAGAGTGACTCATGTATGTCCCATCCAGCTTTGGTAGTCAACATGTatgtaaattcctgtaaaatggATGCATTTTGTGCTTGGATGATCCCACGCACCTTTAGCTGTCACCTGCATAACGTGTGCTTCATTCATCGCCCTTCTGATTTTACACGGTCATTCACAATCATGTTAtgaggaaaagcaaaaaaacaacagacaaaaaaaaaacggccaAAGTGGTAGCCTAACACGCAGACGATTGGCTCCAATTGCATCGAATGCGATGTCCAAATTGTGTCCAAAATGTCATCCATTTGGCAGGGATGTTGATTTCCTGCACTGCTACTGAGATCCTCTATTAGAGCAATGCAAATGTCTATTGTTTGGTTGTGGTTTCTCTACCTTTTGTTCTGGTAATAGACTTCAGTGCATGAAtcacgttattattattattattattcatattattttgattCTACATTGAATAGACTCCAATGTAATCTTTCTGTAGTCAAGATGTACCCTGCTGTACTGTAACGTGCTGTAGCCGATGCATCTGCTCATTGGATGTTGCTTTTGTTCTGTTAACCCTGTACTGAGCATGGTGGGCCTTGCTATTGGtcaatgttgttttatttgttgcatgGACTTATTATTATGACACAAATCCacatatatactaatatttttcaataaagaaTATAGTATTTTTCCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88767 False 1695 lncRNA 0.40 2 725264 727029
TU88852 False 797 TUCP 0.53 5 727189 731620
XM_043246159.1 True 4232 mRNA 0.43 7 723145 731844

Neighbor

gene id symbol gene type direction distance location
fabp1b.1 fabp1b.1,LOC107573351,LOC107726869,LOC107704576,LOC107579792,LOC107712467,LOC107661522,LOC103043953 coding downstream 92000 630354 ~ 631145 (-)
sprb spr,LOC107661521,LOC107569671,LOC107726883,LOC107712600,LOC107568099 coding downstream 112231 607450 ~ 610914 (-)
lzts3b lzts3,LOC107569677,LOC107712591,LOC107661533 coding downstream 121301 588798 ~ 601844 (-)
ubox5 NA coding downstream 136444 581029 ~ 586701 (-)
LOC122350794 LOC107661539,LOC107704586,LOC107726870,LOC107568101,LOC107581163 coding downstream 146967 572583 ~ 576178 (-)
spinb zgc:110697,LOC107726871,LOC107704578,LOC107577825 coding upstream 11349 743193 ~ 747336 (-)
lrrc2 lrrc2,LOC107697579 coding upstream 28374 760218 ~ 770520 (-)
srp19 srp19,LOC107704595 coding upstream 51804 783648 ~ 786422 (-)
nudt12 nudt12 coding upstream 71179 803023 ~ 809151 (-)
prdm6 prdm6,LOC107713557,LOC107726219 coding upstream 153348 885192 ~ 914375 (-)
G60036 NA non-coding downstream 62047 660435 ~ 661098 (-)
G60016 NA non-coding downstream 105673 615281 ~ 617472 (-)
G59739 NA non-coding downstream 171263 514767 ~ 551882 (-)
G59750 NA non-coding downstream 175234 545919 ~ 547911 (-)
G59688 NA non-coding downstream 486488 236074 ~ 236657 (-)
G60061 NA non-coding upstream 23780 755624 ~ 756643 (-)
G60079 NA non-coding upstream 84617 816461 ~ 820768 (-)
G60085 NA non-coding upstream 100883 832727 ~ 835131 (-)
G60080 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107726216,LOC107704598,LOC107573349 non-coding upstream 113575 845419 ~ 852159 (-)
G60112 NA non-coding upstream 144115 875959 ~ 876869 (-)
ccl27a NA other downstream 152172 565886 ~ 570973 (-)
csgalnact1b LOC107712620 other upstream 949 732793 ~ 739372 (-)
G60098 NA other upstream 403557 1135401 ~ 1138152 (-)
commd10 commd10,LOC107728250,LOC107663591 other upstream 408854 1140698 ~ 1159286 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 617327 1349171 ~ 1356953 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 829702 1561546 ~ 1606609 (-)

Expression


Co-expression Network