csgalnact1b (LOC107712620)


Basic Information

Item Value
gene id csgalnact1b
gene name LOC107712620
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 732793 ~ 739372 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU88853
ttaaaaggtaaaaaaagaaataagtataaaatataaaatataaagtggcagTGTGAATGACCAATTTAAGGTGACTagtgcaatataatatataatactaaatagCATTTTTAGTCGTTACAGAGTAATTGTGTCAGTTACAGCGTAATGAGCGTCTTATACTTCCTTTCAGTGCTGAAACAGAATAATAACTGATTTCCAAAACATTAGCAACCAAAAAGACGGCAAACGGCGAGTTCTGTCTGGAAGTATCAAGTAGCTTGATTTCTTACATTTCAAAAGATCTCATGCAGTTCCTTGCAGGCTTTCTGTGATGATTGCGTGGAAATCAACGAGAGGAATGATGGAGATCAGTCTGATCTCGACCAGAGAGAGCTGAGAAGTCATTTGTGGGAGAAAATAATGCTGAAAGTTATatatacttacacacacacacatatacacacataataccatacacatatacatataagaAAATGTTATGCAATTTCTAGTTCAgacatttgtgtttaattcaaagttttaattgctatttttaactacttaattGTGAAATTACGCCATGTTTTATTACagatatttcatgtttttgttgcacACACACTATGTACGTGATATGCATGATGTTATATATCCTTGCATTAAAGCGTGTTTATTAGCAGCTTATATAACACATACAACGTTTTCCGATAGATATTACATGACTGCTGGTAGAGTAATTAAGTGCATATCTCGATGCACAAAAAGGACTATTTAACTCTCTTTCCATTAAGTCGCTGGTTTGATGACAGAAGTGGAAATTCATAATGCAGCACCTCAGAAACGATGTTTTTCCGGCTTTAAGAGAGCGCTCTCTTACAGGTAAAAAGGTGTTTTATCCGGTGATGTTCAGCCTGTATAATCCAGAGGTCATCTATGGTCAACACATCCCTTCTGCTGAAGATCAGCTGGTAAAACCTCCTTATTCTGCGTCGCTTTTCATGTAACACCAATCTGAAGCTGTGCGTGAAAACGCTCCTCTCTTTGTCAGGTGATCAGGAAAGACTTGGGCTTCTGGAAGGATCTGGACTTCGGGACGACGTGCCAGTACAGATCGGACTTCATCAACGCAGGTGGCTTTGTGAAAGGCGGAGCCGCGGGAGATCTTCACCTCTACAGGAAGTTCCTCCACAGCAGGCTGGTGGTGGTCCGCGCTCCGTGGCGAGGCCTGTTTGACGTGTGGCACCCCACCGTCTGTCACGCGCACGCTCCCGGAGAGACCTTCGAGCTGTGTCTGCGGGAGAAAGCGCTGAAGCAGGCGTCTCACGGTCAGCTGGGACACATCCTCTTCCGCCAGCAGA
>XM_043247330.1
CGTGGTATAGATGTACAAAAATGAGCTTTGTCGTGTTTCTGGTGAGTAGGAGGATGTCTGTGGGCTAGATGAGTATATGCACGCCAGCACACGCTGTATGAATTGCGCGCGAAAAGcgcgtatcatatgcacgtcATACACGCGCCCGTATAAATACCACGCCTTTTTAATTCAGCGTACTATTTAAATGGACTCGATGTGAAATGAGCGACAGCTACAGAGATGAATCTAAAGAACTCTTTCATAGTTTCGAGGAGGAGCCGAGCGGAGCCCAACAGAGCTCCCAGTGAGCGGCTGTCTGCGTTACCCATGATGCCCCGCGGCACACAGAGGGCCCCTTCAGGAGCCCGCCGGTAATAAGCAAACATGCTGGACAGGGCAAACATTTGAACGCAGCTTACATTTATGAGCTGAATCTGAACTTTACCTGCGTGCCTGATCGACAATGCAGTCCTGCTGGAATGGTGGACCGAAGCTCCGATGAAGATCACGTCTTATTTCCGCTAAAAGCCCGTCTTAAGTCGCACAGATCGTCAGCGCGTGGAGGACAGTCATGCAGAGGCGCCGGTTTCTGGGCAAGCGCCTGGCTTCAGCGCTGCTCTTCTGCTCGCTTCTGCTCCTGTATCTCCAGGCCTGCAGGTCTCCGAGAGGAACCCGCTCCAGACGTCCCCCGGGAGACGACGCGCCGGAGTCCGTCCTGCGGCAGCACGAGCGACGCTTCCTCCAGCGCAGCAGGAACCTGACCAGGCTGATCTCGGAGCTGAGAGCCGAGCTGCAGAGACCCGTGGAGCTCCGGGAGCAGGACCAGGCCGAGCTGGAGGAGCTCCTGAGGAAGCAGCTCCGCCGCACCGAGCTCTTCGGCGGAGAGCGGCTGCCCAGCGAGTTTGCCGTGCTGCCGTTCGAGACCTTCACCCTCCGCCGGGTCTACCAGCTGGAGAGCGGCCTGACCAGGCTCCCGGTGGAGAGTCCGCTTCGTCCGGACCGCAGGAACGAGCTGAACGAGGCGCTGGAAGCGGCGCTGCATCTCCTGAACCAGCCCCAGCAGCGCAGGGTTTACTCTCCTCAACACTTCTATGAAGGAATCTTTCGCACGGAGAGGGACAAAGGAACGCTGTATGAGCTGGCCTTCAGAGAAAGCGCTTCTCCAGACTTCAGGAGGCTGGTGTTCTTCCGTCCCTTCGCTCCTCTGATGAAGGTGAAGGAGGAGGTGATGGACGCCTCTCAGATCCTCGTCAATGTGATCGTGCCGCTGGCCGACGCAGTGGACGCTTTCAGGCGATTCGCGCTGCATTTCAGTGAAGCTTGCATTCGTCAGGACGGACGGACGCATCTCACCGTGGTGCTGTTTGGGGCCGAAAAGATGCATGAAGTCAAAGGAATTGTGGATGCAATGTCGAGGAGGATGAAGTACAGGAACGTGACTCTGATCCGTCTGAACGAAGCCTTCTCCAGACGACGAGGTCTAGACATCGGAGCTCGAGCCTGGAAGAAAAGCAACGTCCTGCTGTTGTTCTGTGACGTGAACGTTCGCTTCAGCGCGGACTTCCTGGACTCCTGCCGCATGAACGCTCAAGCAGGTAAAAAGGTGTTTTATCCGGTGATGTTCAGCCTGTATAATCCAGAGGTCATCTATGGTCAACACATCCCTTCTGCTGAAGATCAGCTGGTGATCAGGAAAGACTTGGGCTTCTGGAAGGATCTGGACTTCGGGACGACGTGCCAGTACAGATCGGACTTCATCAACGCAGGTGGCTTTGTGAAAGGCGGAGCCGCGGGAGATCTTCACCTCTACAGGAAGTTCCTCCACAGCAGGCTGGTGGTGGTCCGCGCTCCGTGGCGAGGCCTGTTTGACGTGTGGCACCCCACCGTCTGTCACGCGCACGCTCCCGGAGAGACCTTCGAGCTGTGTCTGCGGGAGAAAGCGCTGAAGCAGGCGTCTCACGGTCAGCTGGGACACATCCTCTTCCGCCAGCAGATCAACGATCATCTGCACAAATACAAGCAGCACGGTATCAAGCCGTGA

Function

NR:

description
PREDICTED: chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88853 False 1340 lncRNA 0.41 2 732840 734242
XM_043247330.1 True 2023 mRNA 0.57 8 732793 739372

Neighbor

gene id symbol gene type direction distance location
rnf165b rnf165b,rnf165,LOC107726876,LOC107569673,LOC107712483,LOC107704592 coding downstream 7823 713366 ~ 724970 (-)
fabp1b.1 fabp1b.1,LOC107573351,LOC107726869,LOC107704576,LOC107579792,LOC107712467,LOC107661522,LOC103043953 coding downstream 101648 630354 ~ 631145 (-)
sprb spr,LOC107661521,LOC107569671,LOC107726883,LOC107712600,LOC107568099 coding downstream 121879 607450 ~ 610914 (-)
lzts3b lzts3,LOC107569677,LOC107712591,LOC107661533 coding downstream 130949 588798 ~ 601844 (-)
ubox5 NA coding downstream 146092 581029 ~ 586701 (-)
spinb zgc:110697,LOC107726871,LOC107704578,LOC107577825 coding upstream 3821 743193 ~ 747336 (-)
lrrc2 lrrc2,LOC107697579 coding upstream 20846 760218 ~ 770520 (-)
srp19 srp19,LOC107704595 coding upstream 44276 783648 ~ 786422 (-)
nudt12 nudt12 coding upstream 63651 803023 ~ 809151 (-)
prdm6 prdm6,LOC107713557,LOC107726219 coding upstream 145820 885192 ~ 914375 (-)
G60003 NA non-coding downstream 7793 723190 ~ 725000 (-)
G60036 NA non-coding downstream 71695 660435 ~ 661098 (-)
G60016 NA non-coding downstream 115321 615281 ~ 617472 (-)
G59739 NA non-coding downstream 180911 514767 ~ 551882 (-)
G59750 NA non-coding downstream 184882 545919 ~ 547911 (-)
G60061 NA non-coding upstream 16252 755624 ~ 756643 (-)
G60079 NA non-coding upstream 77089 816461 ~ 820768 (-)
G60085 NA non-coding upstream 93355 832727 ~ 835131 (-)
G60080 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107726216,LOC107704598,LOC107573349 non-coding upstream 106047 845419 ~ 852159 (-)
G60112 NA non-coding upstream 136587 875959 ~ 876869 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other downstream 949 723145 ~ 731844 (-)
ccl27a NA other downstream 161820 565886 ~ 570973 (-)
G60098 NA other upstream 396029 1135401 ~ 1138152 (-)
commd10 commd10,LOC107728250,LOC107663591 other upstream 401326 1140698 ~ 1159286 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 609799 1349171 ~ 1356953 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 822174 1561546 ~ 1606609 (-)
G60220 NA other upstream 837433 1576805 ~ 1580616 (-)

Expression


Co-expression Network