G60169 (trim36,LOC107749435,LOC107573790)


Basic Information

Item Value
gene id G60169
gene name trim36,LOC107749435,LOC107573790
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1232076 ~ 1266809 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU88997
TTTAATTAGCATCAAGATACATTGATGCCTGTCACAAAAAGAGGGAGGAGTCAACAAAGCAGTGATGCACCCACAAAGACAACTGCAGTTTAAACAATGAACTGTAGTATTAATCAAATTGATATGTTCTATTTTATATACCTGGGTGCATGCGCTTATTAGTAATGCATCTTTTCTAGATTCAAAGTAAACACTGCTTTGGCAACACATTATCATGCTAGTAAAGGacatattgatttgatttgagagAGCTTagagagtgtgtttgtgtgattacCGGACGCGGGGGGCGTGTTCAGGGTCACCTCGGGGCTGCTGGGGCTGTAGACTCGGTTCCTGCAGCTCTTGACCCTGAAGGCGTAGCTGGACTCTGGGCTCAGGTCAGACAGCACAGTGCTGGAGCCGAACACAGGCTCGCTGGATCTCCACTCCTGCTCCTCAGACCCCAGCCTCCTGAACTCCACCACATGATGATCGGTGGGCAGAGAGTCCTCGGACAGACGCCAGTGGATCAGAGCCTCGTTATAAACCCGGCAGCGAGAGAGATCGATCACAGGAGGC

Function

symbol description
trim36 Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in anencephaly. Orthologous to human TRIM36 (tripartite motif containing 36).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM36-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88997 True 561 lncRNA 0.49 2 1232076 1266809

Neighbor

gene id symbol gene type direction distance location
ap3s1 ap3s1,LOC107661175,LOC107566394,LOC107729057 coding downstream 63619 1160400 ~ 1168457 (-)
dmxl1 dmxl1,LOC107571775,LOC107663590,LOC107704574 coding downstream 174149 1016890 ~ 1057927 (-)
prr16 LOC107713553 coding downstream 227663 998648 ~ 1004413 (-)
LOC122350790 lox,LOC107726222,LOC107704580 coding downstream 243516 981634 ~ 988560 (-)
LOC122350969 sncaip,LOC107577394 coding downstream 252043 966169 ~ 980033 (-)
LOC122350264 dgcr6,LOC107572069,LOC107721026,LOC105899531 coding upstream 180191 1447000 ~ 1454530 (-)
dtx1 dtx1,LOC107692206,LOC107671029 coding upstream 227696 1494505 ~ 1523464 (-)
LOC122350659 NA coding upstream 360844 1627653 ~ 1646362 (-)
LOC122349997 NA coding upstream 443549 1710358 ~ 1714221 (-)
LOC122350661 NA coding upstream 505173 1771982 ~ 1777474 (-)
G60170 NA non-coding downstream 13274 1214307 ~ 1218802 (-)
G60154 NA non-coding downstream 47427 1184308 ~ 1184649 (-)
G60153 NA non-coding downstream 109843 1120928 ~ 1122233 (-)
G60133 NA non-coding downstream 166876 1064397 ~ 1065200 (-)
G60131 NA non-coding downstream 169838 1061093 ~ 1062238 (-)
G60187 NA non-coding upstream 1989 1268798 ~ 1269384 (-)
G60188 NA non-coding upstream 12191 1279000 ~ 1279303 (-)
G60189 NA non-coding upstream 45076 1311885 ~ 1312144 (-)
G60192 NA non-coding upstream 85158 1351967 ~ 1449930 (-)
G60194 NA non-coding upstream 117610 1384419 ~ 1474712 (-)
commd10 commd10,LOC107728250,LOC107663591 other downstream 72790 1140698 ~ 1159286 (-)
G60098 NA other downstream 93924 1135401 ~ 1138152 (-)
csgalnact1b LOC107712620 other downstream 492704 732793 ~ 739372 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other downstream 500232 723145 ~ 731844 (-)
ccl27a NA other downstream 661103 565886 ~ 570973 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 82362 1349171 ~ 1356953 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 294737 1561546 ~ 1606609 (-)
G60220 NA other upstream 309996 1576805 ~ 1580616 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other upstream 466055 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other upstream 482253 1749062 ~ 1762549 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G86164 NA non-coding CI01000014 null 981960 ~ 982673 (+)