LOC122350266 (dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434)


Basic Information

Item Value
gene id LOC122350266
gene name dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1349171 ~ 1356953 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU89022
CACGGTTCAAAACAATAGTCTCTTGAATGTGTGAGATTTGTTATTATACATCATAAACAGCAGACGTACGCTCTTATTGAACGCCACACGCATCAAACCACAACATTTTCCTCTCAGGAGGCTGAGATATAAAGCGGACCCGTGCTGGAGCGGCGTTAAGAAGACCCCTGTTTTGTTGACGATGTGCAGGCTGAGTGTGGGATGGACACGTACCCGGCCGTGAGAGACGACCCGTCGGATGCCGCCAGGCAGCAGGAGAGACACTATTACCTGCTGTCAGAGCTGCAGACGCTCGTGAAGGACCTGCCCAGCTCGTTCCAGCAGCGTCTGTCCTACACCACTCTCAGTGATCTGGCCCAAGCGCTCATCGACGGGACGGTGTACGAAATAGTGCAAGGACTGCTGGACATTCAGCACCTGACGGAGAAGAACCTCTACAACCAGAGACAGAAACTACACAGCGAGCACagagctctcAAGCAGGATTTGGTTCGGAAGCACAAGCAGGCTCTGCAGATGTGCAAGTCTCACAATCTGTCCGTTGTGAAAAGCAACCAGAGAGCGGAGACTGAGGCTCTTGATCAGCGGGTGAGAGAAGAGCAGAGGATGAT
>XM_043246612.1
TGCGCATGCGCAAACATGCACGCACGGTTCAAAACAATAGTCTCTTGAATGTGTGAGATTTGTTATTATACATCATAAACAGCAGACGTACGCTCTTATTGAACGCCACACGCATCAAACCACAACATTTTCCTCTCAGGAGGCTGAGATATAAAGCGGACCCGTGCTGGAGCGGCGTTAAGAAGACCCCTGTTTTGTTGACGATGTGCAGGCTGAGTGTGGGATGGACACGTACCCGGCCGTGAGAGACGACCCGTCGGATGCCGCCAGGCAGCAGGAGAGACACTATTACCTGCTGTCAGAGCTGCAGACGCTCGTGAAGGACCTGCCCAGCTCGTTCCAGCAGCGTCTGTCCTACACCACTCTCAGTGATCTGGCCCAAGCGCTCATCGACGGGACGGTGTACGAAATAGTGCAAGGACTGCTGGACATTCAGCACCTGACGGAGAAGAACCTCTACAACCAGAGACAGAAACTACACAGCGAGCACagagctctcAAGCAGGATTTGGTTCGGAAGCACAAGCAGGCTCTGCAGATGTGCAAGTCTCACAATCTGTCCGTTGTGAAAAGCAACCAGAGAGCGGAGACTGAGGCTCTTGATCAGCGGGTGAGAGAAGAGCAGAGGATGATGGATTTGGTGAAGGTGGTGGCTGAGATGGATCAGAAGGTTCTGGATCAGCAGAACACTCTGGAGAAAGCAGGCGTGCCGGGTTTCTACATCACCTCCAACCCTCAGGAGGTGATGATGCAGATGAATCTTCTGGAGCTGATCCTGAAGCTGCAGCAGAAAGAGACGGTGTCTGGATCTCTTCCCTGACCGGCGTGGATGAGCTCAGGAAGCGTTCTTAAGAGAACGGTCTTTTAGTTGATGACGTGACGACCGCCCGCCGCTTTTGTTTCAcgttaaatgttgttttgtaaataaatgccttgttcACGTTCATGCGTTGTCACGCCAAGAAACTATATTTGTTTATTCTTCAAACGTTTGTAAAAATACTGACTTGATTTGCATcattaaatatcacaaaaactCAC

Function

symbol description
dgcr6 Orthologous to several human genes including DGCR6L (DiGeorge syndrome critical region gene 6 like).

NR:

description
PREDICTED: protein DGCR6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89022 False 611 TUCP 0.53 5 1351910 1356931
XM_043246612.1 True 1041 mRNA 0.50 6 1349171 1356953

Neighbor

gene id symbol gene type direction distance location
pym1 LOC107701384 coding downstream 96655 1250060 ~ 1252516 (-)
LOC122350094 NA coding downstream 100807 1244834 ~ 1248364 (-)
ap3s1 ap3s1,LOC107661175,LOC107566394,LOC107729057 coding downstream 180714 1160400 ~ 1168457 (-)
dmxl1 dmxl1,LOC107571775,LOC107663590,LOC107704574 coding downstream 291244 1016890 ~ 1057927 (-)
prr16 LOC107713553 coding downstream 344758 998648 ~ 1004413 (-)
LOC122350264 dgcr6,LOC107572069,LOC107721026,LOC105899531 coding upstream 90047 1447000 ~ 1454530 (-)
dtx1 dtx1,LOC107692206,LOC107671029 coding upstream 137552 1494505 ~ 1523464 (-)
LOC122350659 NA coding upstream 270700 1627653 ~ 1646362 (-)
LOC122349997 NA coding upstream 353405 1710358 ~ 1714221 (-)
LOC122350661 NA coding upstream 415029 1771982 ~ 1777474 (-)
G60189 NA non-coding downstream 37027 1311885 ~ 1312144 (-)
G60188 NA non-coding downstream 69868 1279000 ~ 1279303 (-)
G60187 NA non-coding downstream 79787 1268798 ~ 1269384 (-)
G60169 trim36,LOC107749435,LOC107573790 non-coding downstream 82362 1232076 ~ 1266809 (-)
G60166 LOC107701385,LOC107573793,LOC107749411,LOC107572966,LOC107728257,LOC107661167 non-coding downstream 82939 1264599 ~ 1266232 (-)
G60194 NA non-coding upstream 27466 1384419 ~ 1474712 (-)
G60198 NA non-coding upstream 42775 1399728 ~ 1493160 (-)
G60199 NA non-coding upstream 101017 1457970 ~ 1514295 (-)
G60217 NA non-coding upstream 185493 1542446 ~ 1544129 (-)
LOC122350073 NA non-coding upstream 293967 1650920 ~ 1655010 (-)
commd10 commd10,LOC107728250,LOC107663591 other downstream 189885 1140698 ~ 1159286 (-)
G60098 NA other downstream 211019 1135401 ~ 1138152 (-)
csgalnact1b LOC107712620 other downstream 609799 732793 ~ 739372 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other downstream 617327 723145 ~ 731844 (-)
ccl27a NA other downstream 778198 565886 ~ 570973 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 204593 1561546 ~ 1606609 (-)
G60220 NA other upstream 219852 1576805 ~ 1580616 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other upstream 375911 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other upstream 392109 1749062 ~ 1762549 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 702441 2059394 ~ 2061481 (-)

Expression


Co-expression Network