LOC122349999


Basic Information

Item Value
gene id LOC122349999
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1717401 ~ 1765543 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU89101
AGGAGGAGTATCTTTGTTATACGTCTGCTTTTCTTCCttcattgCTGTTGGTCTCTTCATCTTGATTGCAGCAGTGATTGTGACCAACATCAGGAGCAAAACTAAAGACACCGACTCCACAGCAGTTACCGACAATGACTACACAGAAGTGTAAAAATCACTTtaagaagagaagagaacaggcatgaagaaaaacaaaaaacatataaatgaaaaatataattgttataaCCCATGACTAGGGGTGCACATAAGTGGTATGCAGATAAACATATGGGCTGTATACATTCAGACCACTTTGACAGAtgttaatgcataaaaaatgcataaaaaccaTTATTACTGTATAAGATTTGCATTCAAACTTGAAGCATGAATCAAGGTTAAGCACGGATTTTTCAAAGAGAATAagtgtaaataaagtgtaataaaattatttgtttatttttatagttatatttaaaaggTCAGACCATGTTCAGTGAAAACCAAACCAAGTCTCCAGGTGAACTCATGTGCACCCCTGCTTATATCCAcaacctttacatttttattttagtttattagttttttgtttgtttggttggtttTTGCTTATGCTGTAGTATTCCTcatttgtttgttatataaaaataactgaatctGTTACTTCTGATTTCTTTACTGAAGCTTTGCTTTATGTTCACAAAGAGTAAGGGGGAGAAGCCATggtattgtatttttgaaaaatttgtatatgaaaataaaaactatacttGCATGTGA
>TU89102
cttcattgCTGTTGGTCTCTTCATCTTGATTGCAGCAGTGATTGTGACCAACATCAGGAGCAAAACTAAAGACACCGACTCCACAGCAGTTACCGACAATGACTACACAGAAGTGTAAAAATCACTTtaagaagagaagagaacaggcatgaagaaaaacaaaaaacatataaatgaaaaatataattgttataaCCCATGACTAGGGGTGCACATAAGTGGTATGCAGATAAACATATGGGCTGTATACATTCAGACCACTTTGACAGAtgttaatgcataaaaaatgcataaaaaccaTTATTACTGTATAAGATTTGCATTCAAACTTGAAGCATGAATCAAGGTTAAGCACGGATTTTTCAAAGAGAATAagtgtaaataaagtgtaataaaattatttgtttatttttatagttatatttaaaaggTCAGACCATGTTCAGTGAAAACCAAACCAAGTCTCCAGGTGAACTCATGTGCACCCCTGCTTATATCCAcaacctttacatttttattttagtttattagttttttgtttgtttggttggtttTTGCTTATGCTGTAGTATTCCTcatttgtttgttatataaaaataactgaatctGTTACTTCTGATTTCTTTACTGAAGCTTTGCTTTATGTTCACAAAGAGTAAGGGGGAGAAGCCATggtattgtatttttgaaaaatttgtatatgaaaataaaaactatacttGCATGTGA
>XR_006251551.1
cttcattgCTGTTGGTCTCTTCATCTTGATTGCAGCAGTGATTGTGACCAACATCAGGAGCAAAACTAAAGACACCGACTCCACAGCAGTTACCGACAATGACTACACAGAAGTGTAAAAATCACTTtaagaagagaagagaacaggcatgaagaaaaacaaaaaacatataaatgaaaaatataattgttataaCCCATGACTAGGGGTGCACATAAGTGGTATGCAGATAAACATATGGGCTGTATACATTCAGACCACTTTGACAGAtgttaatgcataaaaaatgcataaaaaccaTTATTACTGTATAAGATTTGCATTCAAACTTGAAGCATGAATCAAGGTTAAGCACGGATTTTTCAAAGAGAATAagtgtaaataaagtgtaataaaattatttgtttatttttatagttatatttaaaaggTCAGACCATGTTCAGTGAAAACCAAACCAAGTCTCCAGGTGAACTCATGTGCACCCCTGCTTATATCCAcaacctttacatttttattttagtttattagttttttgtttgtttggttggtttTTGCTTATGCTGTAGTATTCCTcatttgtttgttatataaaaataactgaatctGTTACTTCTGATTTCTTTACTGAAGCTTTGCTTTATGTTCACAAAGAGTAAGGGGGAGAAGCCATggtattgtatttttgaaaaatttgtatatgaaaataaaaactatacttGCATGTGA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89101 True 765 lncRNA 0.32 3 1717401 1765543
TU89102 False 729 lncRNA 0.32 2 1717401 1718462
XR_006251551.1 False 729 lncRNA 0.32 2 1717401 1718462

Neighbor

gene id symbol gene type direction distance location
LOC122349997 NA coding downstream 3180 1710358 ~ 1714221 (-)
LOC122350659 NA coding downstream 71039 1627653 ~ 1646362 (-)
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 193937 1494505 ~ 1523464 (-)
LOC122350264 dgcr6,LOC107572069,LOC107721026,LOC105899531 coding downstream 262871 1447000 ~ 1454530 (-)
pym1 LOC107701384 coding downstream 464885 1250060 ~ 1252516 (-)
LOC122350661 NA coding upstream 6439 1771982 ~ 1777474 (-)
si:dkey-178e17.3 LOC107754395,LOC107671045,LOC107657210,LOC107722861 coding upstream 71580 1837123 ~ 1852539 (-)
si:dkey-178e17.1 slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497 coding upstream 92377 1857920 ~ 1878899 (-)
cltcl1 LOC107559593,LOC107670971,LOC108412499 coding upstream 115195 1880738 ~ 1926722 (-)
si:dkeyp-117b11.1 LOC107670989,LOC107657213,LOC107754414,LOC107722857,LOC107560032,LOC107559594,LOC107559561 coding upstream 162186 1927729 ~ 1936872 (-)
G60207 NA non-coding downstream 22581 1674474 ~ 1694820 (-)
G60214 NA non-coding downstream 33361 1673516 ~ 1684040 (-)
G60209 NA non-coding downstream 45635 1661489 ~ 1671766 (-)
LOC122350072 NA non-coding downstream 50412 1664302 ~ 1666989 (-)
LOC122350074 NA non-coding downstream 57409 1657738 ~ 1659992 (-)
G60237 NA non-coding upstream 83945 1849488 ~ 1849933 (-)
G60471 NA non-coding upstream 222230 1987773 ~ 1988553 (-)
G60473 NA non-coding upstream 225792 1991335 ~ 1994745 (-)
G60487 dynll1,dyl1,LOC107559583,LOC100698873 non-coding upstream 272157 2037700 ~ 2039825 (-)
G60510 NA non-coding upstream 358515 2124058 ~ 2124341 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 110792 1561546 ~ 1606609 (-)
G60220 NA other downstream 136785 1576805 ~ 1580616 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 360448 1349171 ~ 1356953 (-)
commd10 commd10,LOC107728250,LOC107663591 other downstream 558115 1140698 ~ 1159286 (-)
G60098 NA other downstream 579249 1135401 ~ 1138152 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 293851 2059394 ~ 2061481 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other upstream 365826 2131369 ~ 2162003 (-)
G60564 pxnb other upstream 695388 2460931 ~ 2464371 (-)
bicdl1 bicdl1,LOC107553048 other upstream 755671 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 1017077 2782620 ~ 2823826 (-)

Expression


Co-expression Network