G60258


Basic Information

Item Value
gene id G60258
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1908528 ~ 1911167 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU89147
acctTCTCTGCTTTGAGCCACTTCTCCAGCAGCTGTGTTCTTCCCTGCTGAAGCACCGGCCTGCAGAGCTCCACCGACTCCAGCTTATTGAGCTGCCCGCGGTCCAGAAGAACCCCGAAGTACTGCAGCAGAGGAGACGGCTGACCGCCCTGAGCCGGGACGCCCTGAGAGAAGAGTGTGTTGAACTTGTGTGTCAGGAGCTCCTCGGCTCCGGGAAGATCGCTGCGTAACGCCAAACGCAACGCCAGCTCAGGATTCTGCAGCACGTTAGTCACATAATTTACGACATTCTCCTCCTCCACACACACCGACAatacctaaacacacacacacacacacacacacacacatcagtgacaC
>TU89148
CTTCTTAGCATAGAGCACTATCTTCTGGAACTGACCCGTCTCGGCGAAGCACTGGATGACTTTAGCAGGAACGTTGGCTCGGAGGTAAACGCTGAGGGCCAGAGTCACGTCGGCCGCCTTCACCAGATCACCCAGCTCCTCCGAGCACTCCAGCTTCTGCTTTGAGCCACTTCTCCAGCAGCTGTGTTCTTCCCTGCTGAAGCACCGGCCTGCAGAGCTCCACCGACTCCAGCTTATTGAGCTGCCCGCGGTCCAGAAGAACCCCGAAGTACTGCAGCAGAGGAGACGGCTGACCGCCCTGAGCCGGGACGCCCTGAGAGAAGAGTGTGTTGAACTTGTGTGTCAGGAGCTCCTCGGCTCCGGGAAGATCGCTGCGTAACGCCAAACGCAACGCCAGCTCAGGATTCTGCAGCACGTTAGTCACATAATTTACGACATTCTCCTCCTCCACACACACCGACAatacctaaacacacacacacacacacacacacacacatcagtgacaC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89147 False 360 lncRNA 0.56 2 1909151 1911167
TU89148 True 509 lncRNA 0.57 3 1908528 1911167

Neighbor

gene id symbol gene type direction distance location
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 81117 1822636 ~ 1827411 (+)
serpind1 serpind1,LOC107671000,LOC107738496,LOC107559590,LOC107722856,LOC107698014,LOC107560052 coding upstream 101126 1802695 ~ 1807402 (+)
LOC122350660 NA coding upstream 258910 1648478 ~ 1649618 (+)
LOC122351062 NA coding upstream 348161 1559120 ~ 1560367 (+)
LOC122350265 rasal1 coding upstream 426974 1456231 ~ 1481554 (+)
LOC122350512 NA coding downstream 25594 1936761 ~ 1946949 (+)
ikbkb ikbkb,LOC107671012,LOC107722850,LOC107754415 coding downstream 55416 1966583 ~ 1995859 (+)
enkd1 si:ch211-220d9.3,enkd1,LOC107754420,LOC107699630,LOC107657207,LOC107670972 coding downstream 94917 2006084 ~ 2014684 (+)
mrpl40 LOC107753002,LOC107559600,LOC107699643,LOC107560058,LOC107754402,LOC107671004 coding downstream 144164 2055331 ~ 2058725 (+)
gle1 gle1,LOC107671035,LOC107699671,LOC107754403 coding downstream 150374 2061541 ~ 2069288 (+)
G60248 NA non-coding upstream 22089 1885248 ~ 1886439 (+)
G59974 NA non-coding upstream 82692 1755120 ~ 1825836 (+)
G59982 NA non-coding upstream 106442 1800305 ~ 1802086 (+)
G59969 NA non-coding upstream 125991 1729067 ~ 1782537 (+)
G59968 NA non-coding upstream 130042 1724561 ~ 1778486 (+)
G60265 NA non-coding downstream 35981 1947148 ~ 1950296 (+)
G60269 NA non-coding downstream 41626 1952793 ~ 1953126 (+)
G60281 vdac3,LOC107671013,LOC107559564 non-coding downstream 55953 1967120 ~ 1999468 (+)
G60288 NA non-coding downstream 89594 2000761 ~ 2003003 (+)
LOC122350140 NA non-coding downstream 113395 2024562 ~ 2027328 (+)
pggt1b pggt1b other upstream 689724 1210815 ~ 1218804 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 1056524 842077 ~ 852004 (+)
G59807 NA other upstream 1103689 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 1357841 537775 ~ 550687 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 4293 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 103692 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 119657 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 126532 2037699 ~ 2039836 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1937447 3848614 ~ 3850557 (+)

Expression


Co-expression Network