G60342 (LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543)


Basic Information

Item Value
gene id G60342
gene name LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2408095 ~ 2422217 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU89255
ttttattttgaaattctttatttttgattgcaTAACTTAATTCTCTGACCAGGTTGATAACGTTTCTGAcagacaatttatttattttttatttttctgatttcaTGGTTGTTCGGCGAAACGAgtgtgaaactgaaaaaaaaaaaaaaaattctcccaCACACCTAAACTAGTTAATCGAGGTCTGCAGGTTTATACATGAGGTGGAAATGTGGTTAAAACCAAATCTAACACACCTGAATCAGTCAAACTTTTGTCAAAATCAATTATTCGTGCATTTATTATTGGCTTGTGTTGACAAAATGAGTGTTcacaaatataataaagcagCATATTTACATGTGTTGCTTCATGTTGCAAGTTCTATTTACAAGTGGCACAAAAAGAGCTAGTTTATAGccgtaaaaataaaactaataaaatacaaGCATCTTCACGTAATTACTAGGTCATCCATAATTAAtgatttaacaaataaaactccACTAATACGTTGTAGTCACTAGCTCCAATGTAAGAAAATCTGAAGTAACTTCAATTAAAATACCAATCATAGAGATCATGAAATTCTTTATATTCTCTGTGTCGTGCTACATGATCACAGGCAGTGCAGATAGCCAGAATAAACTCTTGTGTCTGTAATATTAAATGAGGACTTGGAGTGAGATGTTTCCTCCAGTTAAAGTACTGCTGATATGCATTGTCATCCCTGTCCAGCTGATGCAGATACTCAGCTAGTGACTTTGCATCCGGGAAGTCATTGACATGAATGAAGGACTCAGCGGGATAATAGTTTTCATAGTTTCTTCTCGGAGGGCCCAAGACCACAGGGACGGTCCCTGCTGCAAGCGGTCCGTTTATCTTCTCCATAAAGTAGTCCTTGTGGATGGAGTTCTCAAAGGCAAGGTAAAATTTGCAGCTAGCCAGGGTTGGATAATAGTCATTATAATCCAGGAATCTTGCATAAGCTCTTCCGAACAAAGTCACTTGTATGTATTTGCTCAGTTCTCTGAAAAAAACGTTTCTCGTGTCAACACCAGTTGAAGGATCGTTGTTGCTTACGATCCAGCACACCAGTTTGTCCTTTTTGGGAATCACGAATTTATCGTCAGGCTTCTTCCTGGTGATCAATTTCATCCGTACGGGAATATCAGCATCCTGTCTGTAGCTGAGAGTGAGATTGAACAGGTTTTCCAGACCCGGTATCCTTTTGGTGTTGGTTGGTGATTCCAAATGCAGCCAAAGCCACCTCTGGAACGGAGGACGAGGAGATGGAGGAAGGTTGGACAGATCCCATTGAATGTCTCTGTGATAAACGATTACGTTATCTGCTTCGTTGTAGAGACCTCTATCATCCGTCAGATGGCAATTATCAATATTGTACAAGTTTTTGCAGTCGATGAAATCAAACCTATAATCTTGAGGCCAAACCCATAACAGAAGTATAGGTTTCTCCACTGTTTTATCAGAAAGAGATTTGTCCTCAGCTTTTTCAGTTACAGACTTGTTGCTCTTGGCAGGGTTTATTAGGTCAGGTCTAAATATTGGAGGTGGACAGTGTTTTGAAGGTGAAAACCAGACAAACACAACACTCAGAGAGATGACACATGTGATCGTCAGTATGACACCCAGACGCAACAGCGACGAGCCGTTTGTGTTCGACATTTTTGGCCTAATAAAAGGGGGAAGTGTCTTGTTTCCCATGTACAGCTTGGTAAATTTGGTGTCCCATATACAGTCGATGTCTGATGCTTAACAGACACGAAGACAGAAGAGAGTGTCTTTAAAGCATGATTTCTTgtcaaatgaaagaaacaacACTGGGTGGTCTTGAGGTTTGTGGCACCTGGAGGAAGTGCCAATGCTTGGGAAGACATGCAACTCGAACCAATCGC

Function

NR:

description
PREDICTED: alpha-(1,3)-fucosyltransferase 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89255 True 1895 lncRNA 0.40 3 2408095 2422217

Neighbor

gene id symbol gene type direction distance location
lhx2b lhx2b,lhx2 coding upstream 76324 2323599 ~ 2331771 (+)
crb2b LOC107754408,LOC107699666,LOC107560064,LOC107568009 coding upstream 204998 2170511 ~ 2203097 (+)
sh3glb2a sh3glb2a,LOC107671032,LOC107754407 coding upstream 255704 2139230 ~ 2152391 (+)
fam102aa fam102aa,LOC107671017,LOC107699668,LOC107752986,LOC107754406,LOC105891604,LOC108430372 coding upstream 274164 2106390 ~ 2133931 (+)
naif1 naif1,LOC107559603,LOC107753004 coding upstream 304189 2096159 ~ 2103906 (+)
LOC122349879 LOC107670988,LOC107552177,LOC107552180,LOC107552179,LOC107670991,LOC107754429,LOC107752990,LOC107553051 coding downstream 3102 2425319 ~ 2428603 (+)
ctu1 ctu1,LOC107752993,LOC107699664,LOC107552165,LOC107754430,LOC107670973 coding downstream 5971 2428188 ~ 2431630 (+)
pxnb pxnb,LOC107670974,LOC107699663,LOC107752988,LOC107553049,LOC107754409,LOC107552183,LOC102784766 coding downstream 9677 2431894 ~ 2464382 (+)
gcn1 gcn1,LOC107552181 coding downstream 42826 2465043 ~ 2508114 (+)
rab35b rab35b,rab35,LOC107699662,LOC107671023,LOC108430363 coding downstream 88572 2510789 ~ 2518882 (+)
G60335 NA non-coding upstream 63926 2343936 ~ 2344169 (+)
G60328 NA non-coding upstream 203785 2192957 ~ 2204310 (+)
G60323 NA non-coding upstream 242853 2163307 ~ 2165242 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding upstream 246051 2159314 ~ 2162044 (+)
G60296 NA non-coding upstream 251701 2153471 ~ 2156394 (+)
G60347 NA non-coding downstream 98613 2520830 ~ 2524134 (+)
LOC122351006 NA non-coding downstream 134813 2557030 ~ 2559048 (+)
G60361 NA non-coding downstream 188100 2610317 ~ 2612227 (+)
G60369 NA non-coding downstream 210500 2632717 ~ 2634015 (+)
G60452 NA non-coding downstream 530799 2953016 ~ 2953994 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 368259 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 372115 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 388061 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 489724 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 1189291 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1426397 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1502644 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1607086 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 2682353 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 2804735 5226952 ~ 5229608 (+)

Expression


Co-expression Network