G60532


Basic Information

Item Value
gene id G60532
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2282538 ~ 2282891 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU89570
TctaatgcatgaaaataaaaaaaacgagcCAATGGTGCCATACCCGATTCTCAACTAATCAGGCTTTTGTAGTCCTCAGTTGAAAGAAAGTCCTACCGCTTTAAAACAACACATGGGTGTGTAAACAATTAcagatttatcatttttttggcTTGAGGTTGTATGTCAGTGTAAGTTTAGCTCTCTTTGTTCAGTGTCCATGTCCTCCACTCGGTTTCCTGCCCTGGCCGCGGCCAACAGGAAATGAAGCGATCTTCTGAGTTCTGATGCTAATGCTACACGTCAATGATCTTAAATTAATCTCACAAGTTTCACATACTCAGCTGAGGGCAACGTCTCCCCACCCTGCagccg

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU89570 True 354 lncRNA 0.43 1 2282538 2282891

Neighbor

gene id symbol gene type direction distance location
LOC122350843 LOC107560046,LOC107699639 coding downstream 144458 2135208 ~ 2138080 (-)
slc25a25a slc25a25a,LOC107671014,LOC107754405,LOC107699669,LOC107560063,LOC108430373,LOC107559565 coding downstream 193245 2082041 ~ 2089293 (-)
zdhhc12a LOC107699641,LOC107560045 coding downstream 201035 2076147 ~ 2081503 (-)
seta seta,LOC107699670,LOC107752982,LOC107754404,LOC107560061,LOC107671021 coding downstream 206942 2071889 ~ 2075596 (-)
acaa2 acaa2,LOC107671002 coding downstream 227355 2046116 ~ 2055183 (-)
LOC122350819 LOC107552180,LOC107552179,LOC107670991,LOC107752989,LOC107754429,LOC107682543,LOC107682550 coding upstream 121319 2404210 ~ 2419714 (-)
LOC122350817 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543,LOC107682550 coding upstream 125455 2408346 ~ 2410033 (-)
LOC122350818 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107752989,LOC107552177,LOC107699637,LOC107670988 coding upstream 137440 2420331 ~ 2422173 (-)
mtmr3 mtmr3,LOC107754413,LOC107671008,LOC107699659 coding upstream 329954 2612845 ~ 2645929 (-)
cux2b cux2,cux2b,LOC107671009,LOC107553024,LOC107715151 coding upstream 368079 2650970 ~ 2816039 (-)
G60530 NA non-coding downstream 29448 2249342 ~ 2253090 (-)
G60519 NA non-coding downstream 114291 2166932 ~ 2168247 (-)
G60510 NA non-coding downstream 158197 2124058 ~ 2124341 (-)
G60487 dynll1,dyl1,LOC107559583,LOC100698873 non-coding downstream 242713 2037700 ~ 2039825 (-)
G60473 NA non-coding downstream 287793 1991335 ~ 1994745 (-)
G60542 NA non-coding upstream 55668 2338559 ~ 2338844 (-)
G60548 NA non-coding upstream 127522 2410413 ~ 2415501 (-)
G60566 gcn1,LOC107552181,LOC107754417,LOC107553027,LOC107699625 non-coding upstream 223347 2506238 ~ 2574004 (-)
G60604 LOC107715152,LOC107553025,LOC107670977 non-coding upstream 318818 2601709 ~ 2612229 (-)
G60638 tmem127,LOC107552193,LOC107713035,LOC107699648,LOC107671030,LOC107553020,LOC107714579 non-coding upstream 656389 2939280 ~ 2940478 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other downstream 120535 2131369 ~ 2162003 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other downstream 221057 2059394 ~ 2061481 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other downstream 460888 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other downstream 519989 1749062 ~ 1762549 (-)
G60220 NA other downstream 701922 1576805 ~ 1580616 (-)
G60564 pxnb other upstream 178040 2460931 ~ 2464371 (-)
bicdl1 bicdl1,LOC107553048 other upstream 238323 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 499729 2782620 ~ 2823826 (-)
G60679 adra1aa,LOC107553034,LOC107699645,LOC107713032,LOC107671010,LOC107552152 other upstream 749576 3032467 ~ 3035092 (-)
lhfpl4b lhfpl4b,LOC107584928,LOC107674308,LOC107727430,LOC107743140,LOC107701811,LOC107552174,LOC103032126,LOC108440531 other upstream 1562562 3845453 ~ 3850590 (-)

Expression


Co-expression Network