G60564 (pxnb)


Basic Information

Item Value
gene id G60564
gene name pxnb
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2460931 ~ 2464371 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU89626
AAAACAccaaatttatttgtatataattgcATGAATTGAAACAATAACTAATACTCACAGAACAAAACGTGACAGTGTtacaggagggaaaaaaaaaatatgcatagcTGATTTCACATTGGGTAAATGATAATATACGTAAAGGGACACTAAAATAACGATCGATGGACAGAAATAGAAAAGCGTCAGATCAATTGATATGATagaaaatctcaaaataaacaaaGGCACAGCGTTTGACCAGTGTAAATGAGTGATTAAAACGCAGAAGGATATCGTATGATCTCCACCGCACCTTCTTTTGGCACATAGCGATTAGGAGCAAAACAAACAGCGACGGATTATTACAACCGAGTTATCAAAGAAGGCATATTCATAGTGAATTTAATAACACAAACCAGAACAAGTATCATCTACTTTCAAAGTAGTGTTTTCTCAACAGCTGATGAGACAGATCTCTGGCACATTGGATCATATAAAAGCTTTCGTATAATAAACACTTGCTGGTATTTATTCAATGCATCCAACGAATCATGTTTGAGACCTTTGCCGGCAGGCGTCCAGAAAGCCGCAGCGTTTCAACGGACACCAATTTGGATCGCATTTAACATCCTTGATCTGAAAATCGCTTCTGCTCCAGTGACGACGCGCTACTGAAAAACATAAGAAAGTCTTCATCGATTCACCCCTTCATGACATCGCGAGTTTTCAAAACTCGCTTTTTGAGAGACGCTTAAGACTTTCATGCAaaacgggaaaaaaaagaaagaattagtAGAGCATATCATAATACAGCAGTTACAACATTGTCTAGAATTGCTTCCGAGAGCGAGCGAGACAATATCAGACACTCATTTCCGATCGAAAATCGTATGCTGGATTCAAGGGTTGAGAAGTGCACGATATCGTCACGGCTATTCAGACGAACGACGTCAAATCTTTGATTTCCGTTAAAGGGAGAGTTCGCCTTAACATGCAAATATGCAGAAGGGCACTATTTCTCAGGCCATCTTCATTCTTCAACAGGTTTGGAGAAGCGCAGGTCAAACGcctgctctgcagtgaatgggtgccgtcagagcaAAAGCGTCACAATCATTCAAATCATCTCTAAACAGATACGCGGGTGGGTCTGGATGAGACAGACAACAGGAGACGGACTATTCGCCTTcatctttctgacggcacccattcgatACAGAGCATCCACCGCAACACTCCATTTCTCCAAGAAACCGAATCAACATGCAAATATGCCGAAGGGGACTATttctcaggccatccgagacgTACATGAGCTTGTTTCCTCAACAGGTTTGGAGAAACGCATGTCACAcctgctctgcagtgaatgggtgccgtcagaacaaaAGCGTCACAATCATTCAAATCATCTCTAAACAGATAAGCGGGTTGGTCTGGATGCGACAGACAACAGGAGACGGACTTTTCGTCTttatcattctgacggcacccattgcaATTCTCCATTTCTCCAAGAAACCGAATCGTCAGTAAACGTTCACATTCGGATGCGCTATTCCTTTAAGCGgatcgtttttttgttttgtgattaaACTCAAATAGCCAGTCACCCCAactacaaaacatttcacaaattgCCGTATGTGACGGGTTCCTTCGGAGAAATATTCTGGGTTAAATAGCAATAAAGCTCTTTTGACTCATCAGTGTAAAAATGAAGGAAACACGTGCGAAGCCGGGTCGCGGTTCGACtttcaaaactgtaaacacgTATTTTCCTTCGattcactaaacaaaaaaatgagtaGAAATGATTTTCTGTATCTTAAATTGTACTCAACCCCCAtatgttcttttaataaaataatactttgagATCAGACGCAAAAAAACTCCTACGAATTCAACGCCATCAACAGCGGGGCAcattcatatctatgggttttaaAGTTTCTCTCAGTCTCTCGGTTACGACTTCCACGCCGGTTACAATCTCTGTTACATCTCGTATTAAAAACTACACATTTGGTATACTTTGCGTCTTTTAAATTCGGTTAAAATCGCGATACAAAACAAGGCACTAAAAGTTGCAATTCGTTGAGGACGTTTAGCGCATTTCACTGAGGAGGCGGAGCTCACGAGAACACATCCAGGCCACATTTCACACCAAAATAATGACAAACTATactttgcataaaagaaaatgcagcTTATTTGACGAGTAATAAGGGTTTATGCTTTATAGTAATATTTGCTTCACACCATTtcaattattagaaatattatttaaaaaaatattattaataacaataataaaacaggatattttgttatattactGTCATGAGAAAGTTTTTTGGTTAAAACcgtaatgttaaaaataatgaaaataacgTCTTTAAGCTGGCTTAAAttcataatgcaaaatattatttatttcggGTTCAAACTAACACTATACGACCTGGATATTTTTCCATGAGCTTCACCAGTAACTCGTTTCGACTTCCAGTCACAAAATCATCTGATGTCTCGTTCCCTTCGGCTGATAGCGTCTCAAACGTTCACGCTGCACACGTTTCCCGCCGTCCCTCCTAAAACCGGTCTCATCCTCGAAGCGGTTTCTCTCCAGCTCAACCAGTGAGCAGAAAACATTCACGCGCTtcctcaaaacaaaacaaaaaaaaaaagtctacgGTCTCACTTTCCTCTAACACCCTCTAAAACAACCTGGCTTTTGAGAGCACTTTTCACGGCACATCGCTTTAACCTGACCAGCAACGTCATGTGGGGATGTCGATTAACctgaataacacacacacacgcacacacacacacgatacaGGCAAACGATACAACATGcaaacttacacacacacacacacacacacacacactctcagtcGGTCGGTCGTCTTTCTAGCTGAAGAGCTTGATGAAGCAGCCCTGGCAGTAAGGCTTGTCGTTTTGCTCTTTGAAGGTGCCCTTGTTGAGCTGCTTGAGGCAGAAGGCACAGACAAAATGCTCAGGGTGAAACTTCTTGCCCATGGCCGTGATGCAGCGGCCCGTGATGGGCTTCTGACAGCCGGAGCACAGCGAGCCGCGGCGGGCGTGATAATGAACCTCGCAGTACGGCTGACCGTCGTGCTCGAAGAAACTGCCGTTGATGAAGGGTGTGAAGcac

Function

symbol description
pxnb Predicted to enable metal ion binding activity. Acts upstream of or within myotome development. Predicted to be located in cell cortex; cell junction; and cytoskeleton. Is expressed in myotome; pectoral fin bud; and vertical myoseptum. Orthologous to human PXN (paxillin).

NR:

description
serine/arginine repetitive matrix protein 2-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89626 True 3169 TUCP 0.42 2 2460931 2464371

Neighbor

gene id symbol gene type direction distance location
LOC122350818 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107752989,LOC107552177,LOC107699637,LOC107670988 coding downstream 38758 2420331 ~ 2422173 (-)
LOC122350819 LOC107552180,LOC107552179,LOC107670991,LOC107752989,LOC107754429,LOC107682543,LOC107682550 coding downstream 41217 2404210 ~ 2419714 (-)
LOC122350817 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543,LOC107682550 coding downstream 50898 2408346 ~ 2410033 (-)
LOC122350843 LOC107560046,LOC107699639 coding downstream 322851 2135208 ~ 2138080 (-)
slc25a25a slc25a25a,LOC107671014,LOC107754405,LOC107699669,LOC107560063,LOC108430373,LOC107559565 coding downstream 371638 2082041 ~ 2089293 (-)
mtmr3 mtmr3,LOC107754413,LOC107671008,LOC107699659 coding upstream 148474 2612845 ~ 2645929 (-)
cux2b cux2,cux2b,LOC107671009,LOC107553024,LOC107715151 coding upstream 186599 2650970 ~ 2816039 (-)
si:ch211-166a6.5 LOC107552189,LOC107713040,LOC107553042,LOC107699620,LOC107670979,LOC107714553,LOC107671022 coding upstream 362105 2826476 ~ 2844716 (-)
dhx37 dhx37 coding upstream 383567 2847938 ~ 2864928 (-)
gp1bb LOC107713039,LOC107671026 coding upstream 401017 2865388 ~ 2868756 (-)
G60548 NA non-coding downstream 45430 2410413 ~ 2415501 (-)
G60542 NA non-coding downstream 122087 2338559 ~ 2338844 (-)
G60532 NA non-coding downstream 178040 2282538 ~ 2282891 (-)
G60530 NA non-coding downstream 207841 2249342 ~ 2253090 (-)
G60519 NA non-coding downstream 292684 2166932 ~ 2168247 (-)
G60566 gcn1,LOC107552181,LOC107754417,LOC107553027,LOC107699625 non-coding upstream 41867 2506238 ~ 2574004 (-)
G60604 LOC107715152,LOC107553025,LOC107670977 non-coding upstream 137338 2601709 ~ 2612229 (-)
G60638 tmem127,LOC107552193,LOC107713035,LOC107699648,LOC107671030,LOC107553020,LOC107714579 non-coding upstream 474909 2939280 ~ 2940478 (-)
G60640 LOC107699617,LOC107714575,LOC107553039,LOC107670999,LOC107552195 non-coding upstream 479346 2943717 ~ 2944007 (-)
G60639 NA non-coding upstream 481039 2945410 ~ 2945931 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other downstream 298928 2131369 ~ 2162003 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other downstream 399450 2059394 ~ 2061481 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other downstream 639281 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other downstream 698382 1749062 ~ 1762549 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 854322 1561546 ~ 1606609 (-)
bicdl1 bicdl1,LOC107553048 other upstream 56843 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 318249 2782620 ~ 2823826 (-)
G60679 adra1aa,LOC107553034,LOC107699645,LOC107713032,LOC107671010,LOC107552152 other upstream 568096 3032467 ~ 3035092 (-)
lhfpl4b lhfpl4b,LOC107584928,LOC107674308,LOC107727430,LOC107743140,LOC107701811,LOC107552174,LOC103032126,LOC108440531 other upstream 1381082 3845453 ~ 3850590 (-)
zgc:113363 LOC107743117,LOC107701819,LOC107727412,LOC107584929 other upstream 1535960 4000331 ~ 4006806 (-)

Expression


Co-expression Network