G61007


Basic Information

Item Value
gene id G61007
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4301672 ~ 4342107 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU90322
aggcggtcgccgccacgcaggagtgctaccttcctcaaccaggctccagcagtcggagtgggcggggcagggattcctctccgggccactcccctctcgcaccgggacagagaaaccgggaattagtcggaatgctcaaccagccaccgggtaaatgaccataagcaagcgtcacttacccttcctggtggctgggagcgagtctccgttgttcctccgtcccggcatgggtaccagcgagaggggatgacgtcatcagatgtcgcccaactgtgccgtctaagctccgccttgcccgcattctccaccactgtgacgggaggagccaacgacagacacagtgggcgtggcgtcaggcctcggagaggctttttttattattaacagaaataataataatacaaaataaagtgtccaagggggaagtgtccaaataaaagggggatctggtgtcctcgtcgtgctccgggtaacgtgcaggtttaggccgtgttccagggggggaagggtccaggtaaggggcggagtccggcggtcgcacgcgctcccctttttctggcccggggctcgaggggcggcggcttcttcctcggcgtctccgtcgtttcgttgctccggcggcagagtgggatgagctgtgtgctcacagcctggactacgggggtcccacgacgcacttctcggacggcggggtgaggtccatcgcgcacccttcctggacccacgaggacaccagcgtgcatgcacgggggaagagaccggtctcccgaggagagacgcggtcaggtatttaacggcgacggtgacaaggctaatccccttcaggtgtgcctcgtcacacgccgccagacctgaccgataccacgcccctcctctcgaacacacccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatggtgacaataaagaggaggggcagccgactcgtcacaatatatatacatatatatacacacacacacacatatatatatatattatataaataacatgagaaaaatgtatctatctacactgtctgtgtgttttgcatCTGTGAAATGCTCCTGATTGCCACTGAAAATCGCTTAGCTGCATGCTGGAGTTTGTAaaagcaaacaatcaaaaattgTGTGcagtcaattattttttaacagctATAAAAATTGTCCCACCGCTCAAATAAGGATCATATATCAAGTAACAATTGCTTCTATCATGAAAAAAGTTTTACTAAAGCTGCAAGTTTTTTCTTGAAACTCTCTAGAACGCCTTGCTTCATAGACTGAGAAATGAGTCCAGTGATTTTCTGTGGTAATCGACAGCTTGTCACAGATACTGTCGATAGATCTTACATGCCGTGTATTGAACCTGCAAGATTGCTTTTATGTAGAGGTTTCAagagtgtatttttatatcttttgcATATCAAAGTATGTGATGCCGAAATACAGCaaacctgtaaataaataagtgttctGTTGCCTAGCACTTTGAGGTTTTGTCTGAGGGCTCGATTTGTATCCTTGGCTTCCTATTAAGCTGCCAGTACAAACACGAATGTCACTTTGGTATGAACGCTTCTGCAAAGAACATAAATGTGAATTCAGAAGCATCTCGCTAGTGTTGTGAAATTTCTTTTCATAGACTGACAATTTATGACGGCGCGTGCAATGTGTGAAAAACAGgctgattaaaaatagaaagaaaac

Function

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0043596 nuclear replication fork cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0032993 protein-DNA complex cellular_component
GO:0005657 replication fork cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0005694 chromosome cellular_component
GO:0030894 replisome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU90322 True 1732 lncRNA 0.50 2 4301672 4342107

Neighbor

gene id symbol gene type direction distance location
grm6a grm6a,LOC107601768,LOC107653428,LOC107743101,LOC107674373,LOC108439669,LOC106566502 coding upstream 10987 4237101 ~ 4290685 (+)
comta LOC107601759,LOC107584930,LOC107674306,LOC107653432,LOC107743139,LOC107727411 coding upstream 75425 4218418 ~ 4226247 (+)
srpk3 srpk3,LOC107743111,LOC107727421,LOC107601770,LOC107584918,LOC107674354 coding upstream 119633 4164539 ~ 4182039 (+)
plxnb3 plxnb3,LOC107701812,LOC107743121,LOC107727420,LOC107674349,LOC107584917,LOC107601751 coding upstream 139109 4093252 ~ 4162563 (+)
abcd1 abcd1,LOC107701814,LOC107743108,LOC107552221,LOC107727428,LOC107674359,LOC108265308 coding upstream 210643 4075018 ~ 4091029 (+)
si:ch211-180f4.1 si:ch211-180f4.1,LOC107601766,LOC107743097,LOC107653421,LOC107734538,LOC107674375,LOC107584888,LOC108441099 coding downstream 1768 4343875 ~ 4365977 (+)
otud5a otud5a,otud5,LOC107653422,LOC107743098,LOC107601748,LOC107734530,LOC107584889,LOC107674365 coding downstream 25427 4367534 ~ 4392066 (+)
pim2 LOC107653424,LOC107674377,LOC107734537,LOC107601747,LOC107578221 coding downstream 51100 4393207 ~ 4397088 (+)
slc35a2 LOC107743096,LOC107674336,LOC107653423,LOC107734533,LOC107601764,LOC107584890 coding downstream 57807 4399914 ~ 4410079 (+)
bcap31 bcap31,LOC107653425,LOC107601763,LOC107674338 coding downstream 68243 4410350 ~ 4430408 (+)
G60895 NA non-coding upstream 86466 4140609 ~ 4215206 (+)
G60870 NA non-coding upstream 392872 3907712 ~ 3908800 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding upstream 415799 3884882 ~ 3885873 (+)
G60782 NA non-coding upstream 475256 3824902 ~ 3826416 (+)
G60743 NA non-coding upstream 645740 3654761 ~ 3655932 (+)
G61048 NA non-coding downstream 90891 4432998 ~ 4436499 (+)
G61056 NA non-coding downstream 96901 4439008 ~ 4444416 (+)
G61087 LOC107687770,LOC107743582,LOC107696015,LOC107572510,LOC107738665 non-coding downstream 156770 4498877 ~ 4499407 (+)
G61089 NA non-coding downstream 167897 4510004 ~ 4513565 (+)
G61108 NA non-coding downstream 315233 4657340 ~ 4657662 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other upstream 227775 4029303 ~ 4073897 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 370184 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 451115 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 2261836 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 2265692 2030824 ~ 2035980 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 762463 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 884845 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 2413998 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 2506374 6848481 ~ 6849711 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other downstream 2964012 7306119 ~ 7529086 (+)

Expression


Co-expression Network