LOC122350084 (atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117)


Basic Information

Item Value
gene id LOC122350084
gene name atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5226952 ~ 5229608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU90667
CGTTTCCATCATCACTGAACGGGAGAGAAGGACGGCGAAAGGGGTCGACCGTCACATTTCCAGGCAGGCAGAGGCTTGGACGGAGGATGAATGTGATGTACTAAGCAAGGATCTTTTCAATTGGCTTCCACCGACTCTCAGTTCTTTGGGGAGCGAGAAGAAGATAGAAGAACTCCTGTGTTTGGATAAGACTCCTGGAAGATTCATTGAGAGGGATTCTCTTCCCATCTAACCATGGAGAACGCTCACACCAAGAGTGTGGAAGAAGTTTATAGTTATTTCAGCGTCAACGAGAGCACGGGACTGACTTTAGACCAGGTGAAACggcagagagagaaatgggGTCCCAACGAGTTGCCTGCTGAGGAAgGAAAATCTATATGGGAACTTGTCATCGAGCAGTTTGAAGATTTACTTGTGCGGATTCTTCTTCTGGCAGCTTGTATATCTTTTGTAAGTACATTTTGGTTAACATGTTCTAGCAGGTTTCTGCCGTTAT
>XM_043246280.1
AACGCCGTTTCCATCATCACTGAACGGGAGAGAAGGACGGCGAAAGGGGTCGACCGTCACATTTCCAGGCAGGCAGAGGCTTGGACGGAGGATGAATGTGATGTACTAAGCAAGGATCTTTTCAATTGGCTTCCACCGACTCTCAGTTCTTTGGGGAGCGAGAAGAAGATAGAAGAACTCCTGTGTTTGGATAAGACTCCTGGAAGATTCATTGAGAGGGATTCTCTTCCCATCTAACCATGGAGAACGCTCACACCAAGAGTGTGGAAGAAGTTTATAGTTATTTCAGCGTCAACGAGAGCACGGGACTGACTTTAGACCAGGTGAAACggcagagagagaaatgggGTCCCAACGAGTTGCCTGCTGAGGAAgGAAAATCTATATGGGAACTTGTCATCGAGCAGTTTGAAGATTTACTTGTGCGGATTCTTCTTCTGGCAGCTTGTATATCTTTTGTAAGTACATTTTGGTTAACATGTTCTAGCAGGTTTCTGCCGTTATTGTTATTGTGCAATATTCCTTGAGTGCAAATAGGGTTG
>XM_043246281.1
AAACGCCGTTTCCATCATCACTGAACGGGAGAGAAGGACGGCGAAAGGGGTCGACCGTCACATTTCCAGGCAGGCAGAGGCTTGGACGGAGGATGAATGTGATGTACTAAGCAAGGATCTTTTCAATTGGCTTCCACCGACTCTCAGTTCTTTGGGGAGCGAGAAGAAGATAGAAGAACTCCTGTGTTTGGATAAGACTCCTGGAAGGTAGATTCATTGAGAGGGATTCTCTTCCCATCTAACCATGGAGAACGCTCACACCAAGAGTGTGGAAGAAGTTTATAGTTATTTCAGCGTCAACGAGAGCACGGGACTGACTTTAGACCAGGTGAAACggcagagagagaaatgggGTCCCAACGAGTTGCCTGCTGAGGAAgGAAAATCTATATGGGAACTTGTCATCGAGCAGTTTGAAGATTTACTTGTGCGGATTCTTCTTCTGGCAGCTTGTATATCTTTTGTAAGTACATTTTGGTTAACATGTTCTAGCAGGTTTCTGCCGTTATTGTTATTGTGCAATATTCCTTGAGTGCAAATAGGGTTG

Function

symbol description
atp2a2 Enables several functions, including P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential; S100 protein binding activity; and protein C-terminus binding activity. Involved in several processes, including calcium ion transport from cytosol to endoplasmic reticulum; macroautophagy; and mitochondrion-endoplasmic reticulum membrane tethering. Located in endoplasmic reticulum membrane and longitudinal sarcoplasmic reticulum. Part of calcium ion-transporting ATPase complex. Colocalizes with intercalated disc. Implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension.

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform X2

GO:

id name namespace
GO:0008016 regulation of heart contraction biological_process
GO:0006816 calcium ion transport biological_process
GO:0001947 heart looping biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90667 False 499 lncRNA 0.46 4 5226958 5229570
XM_043246280.1 False 542 mRNA 0.46 4 5226953 5229608
XM_043246281.1 True 547 mRNA 0.46 4 5226952 5229608

Neighbor

gene id symbol gene type direction distance location
LOC122349937 ift81,LOC107725332,LOC107599023,LOC106585468 coding upstream 476 5208526 ~ 5226476 (+)
tbc1d22b tbc1d22b,LOC107653399,LOC107734531,LOC107674367,LOC107725284 coding upstream 162021 5020564 ~ 5064931 (+)
pim1 pim1,LOC107734527,LOC107674355,LOC107584899,LOC107598956,LOC107725309,LOC108438567,LOC103031835,LOC105889771 coding upstream 221511 5001545 ~ 5005441 (+)
LOC122350108 LOC107653401 coding upstream 379764 4834488 ~ 4847188 (+)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 400719 4769240 ~ 4826233 (+)
mapk13 mapk13,mk13,LOC107725303,LOC107598961,LOC107734522,LOC108265696,LOC108438563,LOC107653398 coding downstream 83926 5313534 ~ 5323848 (+)
brpf3b brpf3,brpf3b,LOC107725302,LOC107674334,LOC107734521,LOC107653397,LOC107570975 coding downstream 95553 5325161 ~ 5338309 (+)
fxn fxn,LOC107598972,LOC107566812,LOC107674317,LOC107664976 coding downstream 281807 5511415 ~ 5516121 (+)
LOC122349970 LOC107598973,LOC107566802,LOC107757293 coding downstream 318505 5548113 ~ 5605167 (+)
ift81 ift81,LOC107725332,LOC107599023,LOC106585468 coding downstream 410203 5639811 ~ 5658504 (+)
LOC122350006 NA non-coding upstream 82828 5139729 ~ 5144124 (+)
LOC122349982 NA non-coding upstream 227855 4984630 ~ 4999097 (+)
G61189 NA non-coding upstream 309526 4891448 ~ 4917426 (+)
G61190 NA non-coding upstream 316766 4908923 ~ 4910186 (+)
G61160 NA non-coding upstream 373496 4852279 ~ 4853456 (+)
G61290 NA non-coding downstream 162686 5392294 ~ 5396169 (+)
G61281 NA non-coding downstream 180732 5410340 ~ 5423462 (+)
G61312 LOC107664996,LOC107725301 non-coding downstream 220348 5449956 ~ 5453605 (+)
G61341 NA non-coding downstream 378992 5608600 ~ 5609423 (+)
G61345 fnbp1a,LOC107674371,LOC107757295,LOC107566801 non-coding downstream 391442 5621050 ~ 5621594 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other upstream 1153055 4029303 ~ 4073897 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 1295464 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 1376395 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 3187116 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 3190972 2030824 ~ 2035980 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 1526497 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 1618873 6848481 ~ 6849711 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other downstream 2076511 7306119 ~ 7529086 (+)
smim15 smim15,LOC107700545 other downstream 3247563 8477171 ~ 8478331 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other downstream 4474873 9704481 ~ 9705639 (+)

Expression


Co-expression Network