G61525 (atp2a2,atp2a2a,LOC107674294,LOC107757297,LOC107557188)


Basic Information

Item Value
gene id G61525
gene name atp2a2,atp2a2a,LOC107674294,LOC107757297,LOC107557188
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5673641 ~ 5675178 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU91106
CATAGCAGTGATCTCGTCAAAGCCCTGCAGGAACTCCACAATCTTGGACTTGTGTGAAGGCTCGACACGTGCGAAGCAGCGGGCAGCCGTGACGGCCTCGCGCTGGGCGTGAGGTGAAAGGTCGTCAAATTCACGGCCGGTGAAGGCCATGCGGTTGACATCATCGTCCTCCGAGAAGATGCCGATGCGCCTGCAGATGGCCACAGCCGTGCCTTTGTTGTCGCCGGTGATCATGATGACCCGGATGCCAGCGTGACGGCAGAGCTTGATGGAGGCGGCCACTTCTGTCCGGGGAGGATCCAGCATGCCCACGCAGCCCACGAAGGTCAGATCAGATCTGCGAAGCGGGCCGTATCTGACAGGACCATCTCCTCTTTCTTCAGTGGACTATCGCGGGTGGCCAGTGCCAGGCAGCGCAGGGTATCACGGCCAGTGCCATACTCTCTGATCACAGACATGATCTTATCCTTGATGCCTTGAGTCAGGGGAACCCTGGATCCACCCACACGCACATACGTGCACCTGTCGATCACTgaGTTGCAGGCGTTGGCTCTCTCGATCTTAGACAAACTCCTGACGTCAGTGTCAAAAACGTTCATTTTTTCCACCAGGCAGGTCAGAGCCGTCTCTGTGGCCTCTCCAACCTTCTCAAAAACACCTTTAGACT

Function

symbol description
atp2a2a Predicted to enable P-type calcium transporter activity. Acts upstream of or within heart looping and regulation of heart contraction. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; musculature system; pectoral fin; polster; and somite. Human ortholog(s) of this gene implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension. Orthologous to human ATP2A2 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2).
atp2a2 Enables several functions, including P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential; S100 protein binding activity; and protein C-terminus binding activity. Involved in several processes, including calcium ion transport from cytosol to endoplasmic reticulum; macroautophagy; and mitochondrion-endoplasmic reticulum membrane tethering. Located in endoplasmic reticulum membrane and longitudinal sarcoplasmic reticulum. Part of calcium ion-transporting ATPase complex. Colocalizes with intercalated disc. Implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension.

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91106 True 667 lncRNA 0.57 3 5673641 5675178

Neighbor

gene id symbol gene type direction distance location
fnbp1a fnbp1a,fnbp1,LOC107757295 coding downstream 34884 5618549 ~ 5638757 (-)
unc45b unc45b coding downstream 198847 5466567 ~ 5474794 (-)
LOC122350623 LOC107725301,LOC107664996,LOC107674340,LOC107598970,LOC107734523 coding downstream 208918 5458354 ~ 5464723 (-)
tasor2 LOC107664996,LOC107725301,LOC107598970,LOC107566806 coding downstream 215461 5446068 ~ 5458180 (-)
plekha2 si:ch211-204d2.4,LOC107599050,LOC107725306,LOC107734508,LOC107566813,LOC107683853 coding downstream 230061 5437353 ~ 5443580 (-)
anapc7 anapc7,LOC107674331,LOC107664992 coding upstream 12092 5687270 ~ 5692999 (-)
rapgef1a rapgef1a,LOC107598978,LOC107725290,LOC107757300,LOC107664972,LOC107674295 coding upstream 18754 5693932 ~ 5717191 (-)
med27 med27,LOC107557205,LOC107665006,LOC107757301,LOC107725311 coding upstream 60343 5735521 ~ 5782271 (-)
phf19 phf19,LOC107599052,LOC107757290,LOC107674297,LOC107557185 coding upstream 388090 6063268 ~ 6091611 (-)
traf1 traf1,LOC107599053,LOC107664983,LOC107709033,LOC107674383,LOC107557184 coding upstream 418873 6094051 ~ 6105276 (-)
G61507 NA non-coding downstream 88921 5582915 ~ 5584720 (-)
G61502 NA non-coding downstream 99748 5570404 ~ 5573893 (-)
G61476 NA non-coding downstream 307293 5323112 ~ 5366348 (-)
G61478 NA non-coding downstream 321184 5336987 ~ 5352457 (-)
G61459 NA non-coding downstream 407603 5143199 ~ 5266038 (-)
G61526 atp2a2,LOC105014188,LOC108444117,LOC107397196,LOC107725304,LOC106585469,LOC106514585 non-coding upstream 812 5675990 ~ 5676748 (-)
G61519 NA non-coding upstream 9982 5685160 ~ 5687209 (-)
G61538 NA non-coding upstream 64897 5740075 ~ 5740438 (-)
G61550 endog non-coding upstream 170785 5845963 ~ 5967122 (-)
G61554 LOC102215562 non-coding upstream 348817 6023995 ~ 6024838 (-)
G61513 NA other downstream 55977 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 64069 5605172 ~ 5609572 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other downstream 162698 5476213 ~ 5510943 (-)
nr1h5 nr1h5,LOC107653410,LOC107598964,LOC107725330,LOC107674374,LOC107734534,LOC107570978 other downstream 322362 5341394 ~ 5351279 (-)
LOC122349940 fnbp1,fnbp1a,LOC107720911,LOC107675683,LOC107661630,LOC107757295,LOC107674371 other downstream 466119 5195752 ~ 5207522 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other upstream 244783 5919961 ~ 5961106 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other upstream 748564 6423742 ~ 6442982 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other upstream 1139293 6814471 ~ 6816747 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other upstream 1200171 6875349 ~ 7056429 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 1416272 7091450 ~ 7102993 (-)

Expression


Co-expression Network