G61526 (atp2a2,LOC105014188,LOC108444117,LOC107397196,LOC107725304,LOC106585469,LOC106514585)


Basic Information

Item Value
gene id G61526
gene name atp2a2,LOC105014188,LOC108444117,LOC107397196,LOC107725304,LOC106585469,LOC106514585
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5675990 ~ 5676748 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU91107
AAATGTGATCATTGGACCATCATCAGCAGAAATGAACCACCAGGCTGCAGCTCCTACAGTCGCAGCACCCACATAACCTCCGATAGCCAAGTATCTGAAAAAGAGCCATCCAGAGATGAGTGGCTCCTTGGCGTTGCGGGGGGGTTTATTCATGATGTCCAGGTCAGGAGGGTTGAAGCCCAGAGCGGTGGCGGGAAGACCATCGGTCACCAGGTTCACCCACAGCAGCTGGACGGGGATCAGGGCCTCAGGGAAACCCAGCGCAGCGGTGAGGAAGATACTACCACCTCGCCCACGTTGGAGGAGATGAGGTAGCGGATGAACTGCTTCATGTTGTTATAGATAGCTCTGCCTTCCTCAACGGCGGCCACGATGCTGGAAAAGTTGTCATCAGCGAGTACCATCTCCGAGGCTGTCTTGGCCACGGCAGTGCCAGAGCCCATGGCGATGCCAATCTCTGCCTTCTTCAGTGCAGGGGCATCGTTCACACCATCTCCTGTCTGCAGAGAGTCAAGTCAAACAGGACAATCAAAt

Function

symbol description
atp2a2 Enables several functions, including P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential; S100 protein binding activity; and protein C-terminus binding activity. Involved in several processes, including calcium ion transport from cytosol to endoplasmic reticulum; macroautophagy; and mitochondrion-endoplasmic reticulum membrane tethering. Located in endoplasmic reticulum membrane and longitudinal sarcoplasmic reticulum. Part of calcium ion-transporting ATPase complex. Colocalizes with intercalated disc. Implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension.

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91107 True 534 lncRNA 0.55 3 5675990 5676748

Neighbor

gene id symbol gene type direction distance location
fnbp1a fnbp1a,fnbp1,LOC107757295 coding downstream 37233 5618549 ~ 5638757 (-)
unc45b unc45b coding downstream 201196 5466567 ~ 5474794 (-)
LOC122350623 LOC107725301,LOC107664996,LOC107674340,LOC107598970,LOC107734523 coding downstream 211267 5458354 ~ 5464723 (-)
tasor2 LOC107664996,LOC107725301,LOC107598970,LOC107566806 coding downstream 217810 5446068 ~ 5458180 (-)
plekha2 si:ch211-204d2.4,LOC107599050,LOC107725306,LOC107734508,LOC107566813,LOC107683853 coding downstream 232410 5437353 ~ 5443580 (-)
anapc7 anapc7,LOC107674331,LOC107664992 coding upstream 10522 5687270 ~ 5692999 (-)
rapgef1a rapgef1a,LOC107598978,LOC107725290,LOC107757300,LOC107664972,LOC107674295 coding upstream 17184 5693932 ~ 5717191 (-)
med27 med27,LOC107557205,LOC107665006,LOC107757301,LOC107725311 coding upstream 58773 5735521 ~ 5782271 (-)
phf19 phf19,LOC107599052,LOC107757290,LOC107674297,LOC107557185 coding upstream 386520 6063268 ~ 6091611 (-)
traf1 traf1,LOC107599053,LOC107664983,LOC107709033,LOC107674383,LOC107557184 coding upstream 417303 6094051 ~ 6105276 (-)
G61525 atp2a2,atp2a2a,LOC107674294,LOC107757297,LOC107557188 non-coding downstream 812 5673641 ~ 5675178 (-)
G61507 NA non-coding downstream 91270 5582915 ~ 5584720 (-)
G61502 NA non-coding downstream 102097 5570404 ~ 5573893 (-)
G61476 NA non-coding downstream 309642 5323112 ~ 5366348 (-)
G61478 NA non-coding downstream 323533 5336987 ~ 5352457 (-)
G61519 NA non-coding upstream 8412 5685160 ~ 5687209 (-)
G61538 NA non-coding upstream 63327 5740075 ~ 5740438 (-)
G61550 endog non-coding upstream 169215 5845963 ~ 5967122 (-)
G61554 LOC102215562 non-coding upstream 347247 6023995 ~ 6024838 (-)
LOC122350056 NA non-coding upstream 527275 6204023 ~ 6205458 (-)
G61513 NA other downstream 58326 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 66418 5605172 ~ 5609572 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other downstream 165047 5476213 ~ 5510943 (-)
nr1h5 nr1h5,LOC107653410,LOC107598964,LOC107725330,LOC107674374,LOC107734534,LOC107570978 other downstream 324711 5341394 ~ 5351279 (-)
LOC122349940 fnbp1,fnbp1a,LOC107720911,LOC107675683,LOC107661630,LOC107757295,LOC107674371 other downstream 468468 5195752 ~ 5207522 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other upstream 243213 5919961 ~ 5961106 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other upstream 746994 6423742 ~ 6442982 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other upstream 1137723 6814471 ~ 6816747 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other upstream 1198601 6875349 ~ 7056429 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 1414702 7091450 ~ 7102993 (-)

Expression


Co-expression Network