xpr1a (xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040)


Basic Information

Item Value
gene id xpr1a
gene name xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6875349 ~ 7056429 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU91454
GCTGATGGCGGACAACAGCTACTTCACAGACGCCCAGAGAGTCCTGAGAGAGAAAGTCACTCCCAGAGACGCCCGTGCTGGGGCTGTAGCGCTGTCGTTGAGGCACCCGTCTCTGAAAGTAGAAGGAGGTTACTTTTAGTATCTTTCTGTTTCACTTTGAACGGGGTAATATGCGGGACCGGGAAATAGTGGACTGTGACAGACCGGACGGGATTTAGACAACGCAGGCGGCTCTGTAACTTAGtgacagaaataacaaaagCCCCAAAAGAAGACGCTGCCCGACTCGAGGATACTATTATAGTCCGTCTGTGGATTTCTGCTCCGCCAGCATGAAGTTTGCGGAGCACCTGTCTGCCCATATTACTCCAGAATGGAGAAAACAATATATTCAATACGAGGCTTTCAAGGAGATGCTTTATGCGGCCCAGGACCAGGCCCCATCCATAGAAGtCACAGATGAAGACACTGTCAAAGCGGTATTATGCCAAGTTTGAAGAAGAAGTTCTTTCAGGCGTGTGAAA
>XM_043247046.1
TCAGCGCGCGCTGATGGCGGACAACAGCTACTTCACAGACGCCCAGAGAGTCCTGAGAGAGAAAGTCACTCCCAGAGACGCCCGTGCTGGGGCTGTAGCGCTGTCGTTGAGGCACCCGTCTCTGAAAGTAGAAGGAGGTTACTTTTAGTATCTTTCTGTTTCACTTTGAACGGGGTAATATGCGGGACCGGGAAATAGTGGACTGTGACAGACCGGACGGGATTTAGACAACGCAGGCGGCTCTGTAACTTAGtgacagaaataacaaaagCCCCAAAAGAAGACGCTGCCCGACTCGAGGATACTATTATAGTCCGTCTGTGGATTTCTGCTCCGCCAGCATGAAGTTTGCGGAGCACCTGTCTGCCCATATTACTCCAGAATGGAGAAAACAATATATTCAATACGAGGCTTTCAAGGAGATGCTTTATGCGGCCCAGGACCAGGCCCCATCCATAGAAGTCACAGATGAAGACACTGTCAAACGGTATTATGCCAAGTTTGAAGAGAAGTTCTTTCAGACGTGTGAAAAGGAGCTCTCCAAAATCAACACATTCTATTCAGAGAAACTGGCTGAGGCGCAGCGCAGATTTGCAACTTTGCAGAATGAGCTGCAGACGTCTCTGGATGCCCAGCGGGAGAGCAATGCTCCAGGGCTGCGCAGTCGCCGCAAAACGGTGTTGCCTTTGTCCAATAAAGAGCGCAACAAACATCGCAACATCAAAGACCTGCAGCTGGCTTTCAGCGAGTTCTACCTCAGCCTCATCCTTCTGCAGAACTACCAGAATCTGAATTTTACGTTCCGTAAGATTCTGAAGAAACATGACAAGATTCTGGACACACAGCGAGGAGCTGATTGGCGTGTGGCTCACGTGGAGGTGGCTCCATTCTACACCTGTAAGAAGATCACACAGCTCATCTCTGAGACCGAGGCCCTGGTGACCACGGAGCTAGAAGGAGGTGACCGTCAGAAGGCTATGAAGAGGCTCAGAGTTCCACCTCTTGGAGCAGCCCAGCCTGCACCCGCCTGGACCACTTTTCGTGTAGGACTGTATTGTGGAGTCTTCATTGTCCTGGCTGTCGCCTTTGTCCTTATTGGTGCTTTTTTCTTTCGTCATCTGAACATCTGGCCGCTGATACGCATCTACCGCGGTGGTTTCCTGTTGAttcagtttctctttctcttgggGATAAACACGTATGGCTGGAGGCAGGCGGGTGTCAATCATGTGCTGATCTTTGAGCTGAACCCTCGAAACAATCTTTCACATCAACATCTGTTTGAGATTGCTGGATTTTTAGGGGTGTTGTGGTGTCTCAGCATCCTATCCTGTCTGTTTCACGGACAACACTTGGCTCCTATGCAGGCAAACCCACTCATCCTCTATGGCTTCATGGTGCTTTTCCTCATCAACCCTTTCAAAACTGCCTACTACAAATCCCGTTTCTGGCTCATCAAACTTCTGTTCCGTGTGTTCACCGCCCCGTTCCACCGCGTGGAGTTTGCAGACTTCTGGCTGGCAGATCAGCTCAATTCTCTGGTCATTGTGCTGTCGGATCTGGAGTATTTGGTCTGCTACTACAGCATGGAGCTGCAGTGGGGAGATCACCGCGGTTTACTGCCCTACACATATGGTGATGAAAGGTGTAACAGCTATTCTTATGGAGTTCGGGCCATCATCCACTGTCTGCCTGCCTGGCTGCGGTTTGTTCAGTGTCTGCGACGTTACCGTGACACCAGGAGGGCCTTCCCTCACCTGGTGAATGCTGGGAAATACTCCACCACCTTCTTTGTGGTCACATTCGCAGCCCTCTACAGAACTCATAAAgATCAGAAACACGCCGACGCCGAGGTGTTTTTCTACATGCTGATCCTGTCTTCGGTCGTCAGTTCACTCTACACACTGATTTGGGACCTAAAGATGGACTGGGGTCTTTTTGACCGCAATGCAGGCGAGAATACCTTCTTGAGAGAGGAGATTGTTTACCCACATAAAGCCTACTACTACTGTGCCATTATAGAAGATGTGCTTCTGCGCTTCGCCTGGACGCTGCAGATCTCTCTGACTTCCATGACTGCCATTCCTTCCATCGAGGATATCGTGGTTACCATTTTAGCTCCTCTGGAAGTGTTTAGACGTTTTGTGTGGAACTTCTTCCGTCTTGAGAATGAGCACTTGAACAACTGCGGTGAGTTCCGAGCGGTGCGGGACATCTCTGTGGCTCCTCTAAACGCTGATGACCAGACTCTACTGGAGCAGATGATGGACCAGGAGGATGGAGTCCGGAACAGGCAGGGCAAAAAGAGCTGGAAACGGAGCTACAGCCTGTCCTTACGACGACCCCTGCTATCCTCACAGTCTAAGAAGGATACTAAGGTGCTCATTGAGGATACGGATGACGAGGCCTTCAGCTGAACCCAGATCTCGCTGTCACACCACCTGTCTCTGATTTCTATTGGTTCCTCACAGAGCTGCCTCAGCACACCCGACATACATATTCGCACACTCTCTCTTTTCAACACTCACCAAACCATCCAAAGACAGAGTAGTGGACAGAGTTAAGCACAAAAAACAGCCGTGACACATATCAGGACACGACAGCGACATCGTacaaacactaacacacacatacaacgaGATACACACGCACGGAAAAGCCAAGTGTGGAATTTTCCTCAAggtactttttttattagactttttcattttgttcctCTATATTGAtacttttttgtacatttgtttagGTTTTTGAATCTATATTACTGCATATGACTGTTTACAaacttcaaataataaataggaACTACAGGGAGGAGAGTTATCATATGAAAGAATAATATATCGTAAACTGCACTCAAATCGCACACTATAACTGCAGCGCGTTTAGAAATAACAACAGTAGCCGTTATATTCTTTTCCTTtcgtttttctttctttttatttgttgttttgagtTGTCGTCATGACATCGGAGTACGGCCCTGGTGGCATTTTTTGGAAATGCTTCATTTTtctaaaccataaaaaaaacaatgtttaggGAGTTATTGtttcatcatatttaatatgcaaatgtgttttatttttacattttttaacatgcattgcTTTGATATCAAAGCTGTCATATTTTTGCCatgtttggtttgtgtttgAGAGAATGAattgtgcacgtgtgtgtgttttttattttggggatCGATAGCTGATGTTAAACTGCTGTCCTCCTGCTGATGCATAGataattgttattttcattGATACTTGATGACCAGTGAAAGTACTGAAAGTAAACCTGACATTGCTGGTTAATCTTTGAATTACTATtaaggtaaaaacaaaaagatccGATTATTCTGCGAAGTATTTCAAATGCAACGATGCACTAAACAGGAATAATTGTCACCCAACTGCAAAATGAATGGAAGTggacacatttttattgaactAATGTGTTTCCTAGATGGCTTTTTGTATCGCTTGCTATTAACACTGCGAGCCAAACAGGAAATGCAGACGCTGCCAGTCAATTGTAATTCTTCTGGTTGTGATATCAGTTTTGTATTGTGGTAAACCATATGAAATGTTGTGCATCAAAAAGTAGTTCCAGTGTGGCGAGCAGACAAGCTTTTTCCTCGCCAACATCTTAACTATGGTCGCAGTTTGATTATTTGTGTGCTTGACGAGCGTGGTAATATCTTTATaatcagttttacattttgatgaaaaaacGTGATTGTATGTGATctattatgtacatttataatgtacGTTTTTGCAAGACGGGTATAActaccttgtctttcactcatttTCATACATAGTCTGAATTTCAAACGGcatatttaagagaaaaatgGCTGTTTTTCGCCTCTTTATCATAATGCTTCGATAGCAGAGAGCGAAGACTGATATATGAACTTTTATtcgatttttattattattaatatccaTTGTTGtcatcaaaaaagaaaacaccagGGCTGTTTTAACTGATACGTATTTTTTAGCTTACTTTTTCAGCTTTTACTTTACTTTGATACTATTTCAGCAGCATGCGTCGTTGTATTTTTGCAAGCACAATCTTTCAGCTGTAACTAAGATCAATTGAAAACGTGGGTTTGTCTTCacaatctctttttttatttactctttaaaagaaaagtgttaatgctaacaaaaaaaaaaacaatgtacagACAGCGGACGTTGTGTTTGCAagtaacatttacttttttttttaaacacatttaagactaaatttaaatgttcataGTTTGGATTATAAATCTGacagaagaaaggaaaaacTACATGTGACTTGTGGTTGCAAAAGAATATAGAGTGCTATCCTCATTGAAAATGTGGTGTTAATGTGTGGTCCTTTTgtccttttaatattaatgaaatgtcaATCTTGTTGTTCTCAGAATGATCCTTCGGCACACTGTGTCTTACTTTGCTGTCTTTAGTTCTTGACTCTCAGAACTGACTGAATCCTTTATCGAGTAGACTATCGagtggcacacacacacacacactaagtagAAATCACCGTATATGGATGCTGAGCACAAATTTGCCCCATCCAGTGCTTTTTGTAACTCATTGCCAATTGTCTTGCCTGCATGCTGCTTTTGTTTTGCACTGtaaatagttaattttttttacattttaaatgcgtaAAAGAATGTCGCTTAATTTATTCACTGTACTAATTATTTATGTACAAGTTGGagacttttgctttaaatgagCAGTATTATGGTAGATGAAGGGCATTTATGATTAGTCACAATCCCACAGTCTTACATATGTGAATTCTGTCGAAATAGTGTAACTTAAGACGCTTTAGTGAATATGGAATGTGATCGGTTTTATCTACGGTAGGTGTATATTTCTACTCATAACACTTTCATCCCCAGGGTTTGTGCCCATTTCACAGGACTTGCTGGGTGACGGTGGTTTTAGGTCGATATTTTTAACTGATCTGGCTGGAGGGAAGATTGGGACACGTTAACATTCTCATTAACACCCTATCTAGGGGTTCTGTTATGAGACGAGCCCTCAAAATGTAGGggttttattgtacttttttttcctttttcaaatACAGAACTGGAGTAATACACAAGCCCTGACGTCATTTCTTCATGGGGGGGGGACTTTGTCGATTGCTTGCTAAACCCATGATGTTAAGTGCTTGATATCTCTGCATCTTTTCTATCTTCTATCTCGATGTTGTATCCCTTCTTAAATACTTGACTGTGACATTGTTTGTAGTTGATAGATGGTTGTACTTTTGAGTAAGTAAAGACTtacagaaaaatagaaaaaacttGTGGTTCTGTGATTAAATAGAgatataaaaagagagaaaatgtctCAAGAGTTCCCTCTTTTACAGAGTAGTTTGTAAATGTTGAGTGTATTCCTATGATGGTTCCACTGATGATCTCATTTGTGTTTCTGTATACACTTTGGTGATCCTGTCATATTTGGGTTTTATAAACCACgcttatttttaaaaccttCA

Function

symbol description
xpr1a Predicted to enable inositol hexakisphosphate binding activity and phosphate ion transmembrane transporter activity. Predicted to be involved in cellular response to phosphate starvation and phosphate ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and plasma membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human XPR1 (xenotropic and polytropic retrovirus receptor 1).

NR:

description
PREDICTED: xenotropic and polytropic retrovirus receptor 1 homolog

GO: NA

KEGG:

id description
K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU91454 False 524 lncRNA 0.49 3 7017590 7056420
XM_043247046.1 True 5541 mRNA 0.42 16 6875349 7056429

Neighbor

gene id symbol gene type direction distance location
sin3b sin3b,LOC107755301,LOC107758010,LOC107699271 coding downstream 384 6860907 ~ 6874965 (-)
def6a def6a,LOC107550223,LOC107755289,LOC107599059,LOC107757990,LOC107700524 coding downstream 15643 6850516 ~ 6859706 (-)
ndufb11 LOC107550213,LOC107665059,LOC107700515,LOC107599058,LOC107755291,LOC107757991 coding downstream 25634 6848473 ~ 6849715 (-)
rhoaa rhoaa,LOC107599000,LOC107758012,LOC107603137,LOC107755302,LOC106566835,LOC105890655 coding downstream 27996 6841786 ~ 6847353 (-)
si:dkey-6n6.1 si:dkey-6n6.1,LOC107599056,LOC107755293,LOC107665074,LOC107699266,LOC107757992,LOC107550204 coding downstream 40914 6825338 ~ 6834435 (-)
qsox1 qsox1,LOC107665072,LOC107755296,LOC107758006,LOC107699344,LOC107603198 coding upstream 55707 7112136 ~ 7135496 (-)
cep350 cep350 coding upstream 80633 7137062 ~ 7168792 (-)
LOC122350872 soat1,LOC107657858,LOC107758003,LOC107700347 coding upstream 306806 7363235 ~ 7370455 (-)
LOC122350680 LOC107599044,LOC107700337,LOC107757981 coding upstream 318606 7375035 ~ 7377757 (-)
LOC122350884 NA coding upstream 324117 7380546 ~ 7382812 (-)
G61782 NA non-coding downstream 12395 6862028 ~ 6862954 (-)
G61663 NA non-coding downstream 217065 6657498 ~ 6658284 (-)
G61640 NA non-coding downstream 313431 6561450 ~ 6561918 (-)
G61629 NA non-coding downstream 323638 6551404 ~ 6551711 (-)
G61582 NA non-coding downstream 406933 6467953 ~ 6468416 (-)
G61860 cacna1e,LOC107707593,LOC107657843,LOC107599003 non-coding upstream 218161 7274590 ~ 7281165 (-)
G61865 NA non-coding upstream 249683 7306112 ~ 7308340 (-)
LOC122350886 NA non-coding upstream 321326 7377755 ~ 7378459 (-)
LOC122350888 NA non-coding upstream 333859 7390288 ~ 7394209 (-)
G61868 abl2,LOC107599009,LOC107699422,LOC107657876,LOC107707589,LOC107603207 non-coding upstream 489381 7545810 ~ 7548323 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 58602 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 432367 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 914243 5919961 ~ 5961106 (-)
G61513 NA other downstream 1257685 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 1265777 5605172 ~ 5609572 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 35021 7091450 ~ 7102993 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 621067 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 1060579 8117008 ~ 8232774 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 1335916 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 1590841 8647270 ~ 8649983 (-)

Expression


Co-expression Network