lhx4 (lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078)


Basic Information

Item Value
gene id lhx4
gene name lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7091450 ~ 7102993 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU91479
GCGGTTGTGTGGGTAACGCTGTGATGTTATTGGCTGCGGTCGCTGCAGAGAGATCCCTCAGTGCGCAGGCTGCAGTCAGCACATCCTGGATAAGTTTATTCTGAAGGTGCTGGATCGACACTGGCACTCAAAATGTCTCAAGTGCGCCGACTGTCACGCGCTCCTGGCAGACAAGTGTTTCTCTCGCGCGGGGAATGTCTACTGTAAAGAGGATTTCTTCAAGCGTTTTGGGACAAAATGTGCATCGTGCCAGCAGGGGATTCCCCCGACACAGGTGGTCCGGAAAGCTCAGGACTTTGTGTACCACCTTCACTGCTTCGCTTGTGTAATGTGCAGCAGGCAGCTGGCCACCGGTGATGAGTTCTACCTCATGGAGGACGGGAGGCTCGTGTGCAAGGAGGACTACGAAACAGCCAAACAAAATGATGATTCAGAGACAGGAGCAAAACGTCCACGAACCACCATCACAGCCAAACAGCTGGAGACGCTCAAAAGCGCCTACAAGAACTCACCCAAGCCTGCAAGACATGTTCGTGAGCAGCTCTCCTCAGAAACGGG
>XM_043246384.1
AGGCGCGAGGACTGTAAAAGGGACACTATCCGGggagaaaaattatttttacgcACATCTGAGATTCCCAGACCTCCGCGAGCGGGTGCATGTGCGCTTTTTATCGGACTGGATGAAAATGATGCAAAGTGCGGCTGTGTTGCCCGGCGAGAGCGCGGTGAAGGGTCTGCCGGACATCCTCGGAGTGCCACTGCAACAGATCCCTCAGTGCGCAGGCTGCAGTCAGCACATCCTGGATAAGTTTATTCTGAAGGTGCTGGATCGACACTGGCACTCAAAATGTCTCAAGTGCGCCGACTGTCACGCGCTCCTGGCAGACAAGTGTTTCTCTCGCGCGGGGAATGTCTACTGTAAAGAGGATTTCTTCAAGCGTTTTGGGACAAAATGTGCATCGTGCCAGCAGGGGATTCCCCCGACACAGGTGGTCCGGAAAGCTCAGGACTTTGTGTACCACCTTCACTGCTTCGCTTGTGTAATGTGCAGCAGGCAGCTGGCCACCGGTGATGAGTTCTACCTCATGGAGGACGGGAGGCTCGTGTGCAAGGAGGACTACGAAACAGCCAAACAAAATGATGATTCAGAGACAGGAGCAAAACGTCCACGAACCACCATCACAGCCAAACAGCTGGAGACGCTCAAAAGCGCCTACAAGAACTCACCCAAGCCTGCAAGACATGTTCGTGAGCAGCTCTCCTCAGAAACGGGCCTGGACATGAGAGTAGTCCAGGTGTGGTTTCAAAACAGACGAGCAAAGGAGAAACGGCTGAAGAAGGACGCAGGTCGACATCGCTGGGGTCAGTTTTACAAAAGCGTCAAGCGCAGTCGAGGGTCCAGTAAGACGGAGAAGGAGAGCTCAGCCGATGATGCAGGACTCAGCGATAGCGAGCTTAGTTTCAGAGCAGAAGACCAGATCCTGTCAGACCTCGGCCACGCCAACGGCTTGTATGGAAGCGTGGGTGACGTCACGAACGGCAGCATGCTCAACGGGAGCTTCTCCTTGGAGGGGGGCGGGCAGCCTTACCATGACCTGCGGGCAGGAAGTCCCTACGGCCTGCCACAGTCCCCCTCATCCATCACCTCCCTCCCAGGCCACACCCCGCTGCTCAACAACTTAGGCTTCAACATGGACGGCATCATGGGGCAGGGCGGTCAGACCAACGTAGGTCAAGCTCTGAGAGCGATGGCCGGCGGACCCACCTCTGACCTGTCCACAGGAAGCAGCACGGGCTACCCAGACTTCCCCACCAGCCCTGCCTCGTGGCTTGATGAAATGGACCACTCCCAGTTCTGAGGTCAAAGGTCGTAATAGAAAGTGCGCTACTACGGACAAGAAATTTGAAGATTTTATAGACATCTTTCCCGGGAACTGGTGACGTTTGTGCGGCAAGGCCCGAAACGGCACCTACTTTAACGCGGTGACTTGACCTTGCTGAATGGCGCGCTGATACGAGCAACCCGCCGTGGAATGTCTGCGCTGTGTCATAATTTTGTAactcatattttttcattgttctCAAAACTGGATCGGACGATTTCCAGCATGAAATGGCGTGCAGCTGCGAATGGCGTTCAAACCCCAGACCACCCTGGAAAAACAATCACCATCCACCACGTTTTCGAGAACAAGAGGGTCCATGCATGTTTCCGAATGAGGAAGAGAACCGTCCATGTTCAAAAATGGCGACGCACTTTACTGTATGTTCCTCCTCGACTGCACACGGCAGGCTGAATACGGGAAAGAGAGGAGCGCACCGAACAAGGGGAGATATTTAAACAAGTGGCACAAGTGTATCTTTCCTACTTACAAGGGTTTGGGATTTTAATGGTTGAAACTTTCTAAACGGCTCTACTAGAGATGGCCCTTCACATTAGGTTGgaagaataaaaattatttttaataaggatGATTCCGCATGCACTGCTCTGAGTTGTCATAAAAATCAATGGTCCCTGTccattcagtgtttttctgttaaCGTCAGACATATTGGCTCAAAATGAAACaagataattattttagaagattaaaattacatttactatttatttatggtgcggtttagtttatttgttattaatatggTTTATAGTACCATCAAAATACCTTTGTTTGCAATTGCCATTTGTTTCCTACTCATTGCTCCATGAGCAAAAACGGATATCAGAGCAGATGACAAGTGGATTTCTGTTATACAGACACCTTAATGGCCTGACCAATTATTATCAAGCAAAACATGTGAAAGGGAAATttacactgtaattttttttttcttatttgacacatttaagcAACAACTATGAGgatttagtgttatttattcctgtaatgggtACCAATGTCAGTATTATGAAGAGCTGGATCATGGGAGATGGGTTGATGTAAAACTACAAAACTGGTGATACAATTGTAAACATGAGGAATATTTGTTGTGGCAAAATTTGGACCCACATAATGGTAAACTGAGTAAAGATGACGCTATGCTGAAAGAGTGAACATATAAGCTAACAAAGAGCAacatggaaaaaagaaaaattaccattcagaaatgatgttttgttGAATCTATGTTGAGTCTTAATGGCTGTAAATTTTGTAAAGTCTCAAAAAGTGTCGACAGTCTTGTTTCATGAGCACTATTTATTGCTATGgatctttgaaaaaaaagagcactGAATTTAGTCCTATATGCCTTCTGTCCAATGGTATGAATTGTGTACAGTCAAATCTATATGGAGAAATAAAGCCGA
>XM_043246385.1
CAGGCGCGAGGACTGTAAAAGGGACACTATCCGGggagaaaaattatttttacgcACATCTGAGATTCCCAGACCTCCGCGAGCGGGTGCATGTGCGCTTTTTATCGGACTGGATGAAAATGATGCAAAGTGCGGCTGTGTTGCCCGGCGAGAGCGCGGTGAAGGGTCTGCCGGACATCCTCGGAGTGCCACTGCAACAGATCCCTCAGTGCGCAGGCTGCAGTCAGCACATCCTGGATAAGTTTATTCTGAAGGTGCTGGATCGACACTGGCACTCAAAATGTCTCAAGTGCGCCGACTGTCACGCGCTCCTGGCAGACAAGTGTTTCTCTCGCGCGGGGAATGTCTACTGTAAAGAGGATTTCTTCAAGCGTTTTGGGACAAAATGTGCATCGTGCCAGCAGGGGATTCCCCCGACACAGGTGGTCCGGAAAGCTCAGGACTTTGTGTACCACCTTCACTGCTTCGCTTGTGTAATGTGCAGCAGGCAGCTGGCCACCGGTGATGAGTTCTACCTCATGGAGGACGGGAGGCTCGTGTGCAAGGAGGACTACGAAACAGCCAAACAAAATGATGATTCAGAGACAGGAGCAAAACGTCCACGAACCACCATCACAGCCAAACAGCTGGAGACGCTCAAAAGCGCCTACAAGAACTCACCCAAGCCTGCAAGACATGTTCGTGAGCAGCTCTCCTCAGAAACGGGCCTGGACATGAGAGTAGTCCAGGTGTGGTTTCAAAACAGACGAGCAAAGGAGAAACGGCTGAAGAAGGACGCAGGTCGACATCGCTGGGGTCAGTTTTACAAAAGCGTCAAGCGCAGTCGAGGGTCCAGTAAGACGGAGAAGGAGAGCTCAGCCGATGATGCAGGACTCAGCGATAGCGAGCTTAGTTTCAGAGAAGACCAGATCCTGTCAGACCTCGGCCACGCCAACGGCTTGTATGGAAGCGTGGGTGACGTCACGAACGGCAGCATGCTCAACGGGAGCTTCTCCTTGGAGGGGGGCGGGCAGCCTTACCATGACCTGCGGGCAGGAAGTCCCTACGGCCTGCCACAGTCCCCCTCATCCATCACCTCCCTCCCAGGCCACACCCCGCTGCTCAACAACTTAGGCTTCAACATGGACGGCATCATGGGGCAGGGCGGTCAGACCAACGTAGGTCAAGCTCTGAGAGCGATGGCCGGCGGACCCACCTCTGACCTGTCCACAGGAAGCAGCACGGGCTACCCAGACTTCCCCACCAGCCCTGCCTCGTGGCTTGATGAAATGGACCACTCCCAGTTCTGAGGTCAAAGGTCGTAATAGAAAGTGCGCTACTACGGACAAGAAATTTGAAGATTTTATAGACATCTTTCCCGGGAACTGGTGACGTTTGTGCGGCAAGGCCCGAAACGGCACCTACTTTAACGCGGTGACTTGACCTTGCTGAATGGCGCGCTGATACGAGCAACCCGCCGTGGAATGTCTGCGCTGTGTCATAATTTTGTAactcatattttttcattgttctCAAAACTGGATCGGACGATTTCCAGCATGAAATGGCGTGCAGCTGCGAATGGCGTTCAAACCCCAGACCACCCTGGAAAAACAATCACCATCCACCACGTTTTCGAGAACAAGAGGGTCCATGCATGTTTCCGAATGAGGAAGAGAACCGTCCATGTTCAAAAATGGCGACGCACTTTACTGTATGTTCCTCCTCGACTGCACACGGCAGGCTGAATACGGGAAAGAGAGGAGCGCACCGAACAAGGGGAGATATTTAAACAAGTGGCACAAGTGTATCTTTCCTACTTACAAGGGTTTGGGATTTTAATGGTTGAAACTTTCTAAACGGCTCTACTAGAGATGGCCCTTCACATTAGGTTGgaagaataaaaattatttttaataaggatGATTCCGCATGCACTGCTCTGAGTTGTCATAAAAATCAATGGTCCCTGTccattcagtgtttttctgttaaCGTCAGACATATTGGCTCAAAATGAAACaagataattattttagaagattaaaattacatttactatttatttatggtgcggtttagtttatttgttattaatatggTTTATAGTACCATCAAAATACCTTTGTTTGCAATTGCCATTTGTTTCCTACTCATTGCTCCATGAGCAAAAACGGATATCAGAGCAGATGACAAGTGGATTTCTGTTATACAGACACCTTAATGGCCTGACCAATTATTATCAAGCAAAACATGTGAAAGGGAAATttacactgtaattttttttttcttatttgacacatttaagcAACAACTATGAGgatttagtgttatttattcctgtaatgggtACCAATGTCAGTATTATGAAGAGCTGGATCATGGGAGATGGGTTGATGTAAAACTACAAAACTGGTGATACAATTGTAAACATGAGGAATATTTGTTGTGGCAAAATTTGGACCCACATAATGGTAAACTGAGTAAAGATGACGCTATGCTGAAAGAGTGAACATATAAGCTAACAAAGAGCAacatggaaaaaagaaaaattaccattcagaaatgatgttttgttGAATCTATGTTGAGTCTTAATGGCTGTAAATTTTGTAAAGTCTCAAAAAGTGTCGACAGTCTTGTTTCATGAGCACTATTTATTGCTATGgatctttgaaaaaaaagagcactGAATTTAGTCCTATATGCCTTCTGTCCAATGGTATGAATTGTGTACAGTCAAATCTATATGGAGAAATAAAGCCGA

Function

symbol description
lhx4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within ventral spinal cord interneuron specification. Predicted to be active in nucleus. Is expressed in adenohypophyseal placode; nervous system; spinal cord neural keel; and spinal cord neural tube. Human ortholog(s) of this gene implicated in panhypopituitarism. Orthologous to human LHX4 (LIM homeobox 4).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09374 LHX3_4; LIM homeobox protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
TU91479 False 558 TUCP 0.54 4 7094898 7100932
XM_043246384.1 True 2748 mRNA 0.47 6 7091450 7102992
XM_043246385.1 False 2746 mRNA 0.47 6 7091450 7102993

Neighbor

gene id symbol gene type direction distance location
sin3b sin3b,LOC107755301,LOC107758010,LOC107699271 coding downstream 216485 6860907 ~ 6874965 (-)
def6a def6a,LOC107550223,LOC107755289,LOC107599059,LOC107757990,LOC107700524 coding downstream 231744 6850516 ~ 6859706 (-)
ndufb11 LOC107550213,LOC107665059,LOC107700515,LOC107599058,LOC107755291,LOC107757991 coding downstream 241735 6848473 ~ 6849715 (-)
rhoaa rhoaa,LOC107599000,LOC107758012,LOC107603137,LOC107755302,LOC106566835,LOC105890655 coding downstream 244097 6841786 ~ 6847353 (-)
si:dkey-6n6.1 si:dkey-6n6.1,LOC107599056,LOC107755293,LOC107665074,LOC107699266,LOC107757992,LOC107550204 coding downstream 257015 6825338 ~ 6834435 (-)
qsox1 qsox1,LOC107665072,LOC107755296,LOC107758006,LOC107699344,LOC107603198 coding upstream 9143 7112136 ~ 7135496 (-)
cep350 cep350 coding upstream 34069 7137062 ~ 7168792 (-)
LOC122350872 soat1,LOC107657858,LOC107758003,LOC107700347 coding upstream 260242 7363235 ~ 7370455 (-)
LOC122350680 LOC107599044,LOC107700337,LOC107757981 coding upstream 272042 7375035 ~ 7377757 (-)
LOC122350884 NA coding upstream 277553 7380546 ~ 7382812 (-)
G61782 NA non-coding downstream 228496 6862028 ~ 6862954 (-)
G61663 NA non-coding downstream 433166 6657498 ~ 6658284 (-)
G61640 NA non-coding downstream 529532 6561450 ~ 6561918 (-)
G61629 NA non-coding downstream 539739 6551404 ~ 6551711 (-)
G61582 NA non-coding downstream 623034 6467953 ~ 6468416 (-)
G61860 cacna1e,LOC107707593,LOC107657843,LOC107599003 non-coding upstream 171597 7274590 ~ 7281165 (-)
G61865 NA non-coding upstream 203119 7306112 ~ 7308340 (-)
LOC122350886 NA non-coding upstream 274762 7377755 ~ 7378459 (-)
LOC122350888 NA non-coding upstream 287295 7390288 ~ 7394209 (-)
G61868 abl2,LOC107599009,LOC107699422,LOC107657876,LOC107707589,LOC107603207 non-coding upstream 442817 7545810 ~ 7548323 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 35021 6875349 ~ 7056429 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 274703 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 648468 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 1130344 5919961 ~ 5961106 (-)
G61513 NA other downstream 1473786 5614329 ~ 5617664 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 574503 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 1014015 8117008 ~ 8232774 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 1289352 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 1544277 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 1549311 8652304 ~ 8657286 (-)

Expression


Co-expression Network