G61860 (cacna1e,LOC107707593,LOC107657843,LOC107599003)


Basic Information

Item Value
gene id G61860
gene name cacna1e,LOC107707593,LOC107657843,LOC107599003
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7274590 ~ 7281165 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU91585
CAGCTGCAATGggaatctttttttattttatatatttcacaagGCAGCGACCCCCAGCAGGCCATGAAGAACAAGTACCAAATACTCTCTATTCACATTCAGGAACATGTcaagaaaacaaattacaacACAACACATGATACAGAAATTCTCATGAGGGgcaactgattttaaaatgcttataatAAGATGCTGGAATATACAGAAACTAACCAAAGAtctttattaattcaaaatggtatgtaaatatctttgttttgtttgtttctttgtatcATTTAATCGAGAGAGGAAACCAGTCTGAGGAGGCATGTTGGGTGACCAATAACGCTGGTTCCATACTTCTGCTACAATACTCAAAAGACAAATTTTACGTCACGCCCATTTCCTACAGCTACTTCTCAGTCCCAGCTCACCATATTCAGGCttaacatacattttgaattttgcaAACGCATTTGCAAAAGCAGCTTTTCTGCTAGACCTAGCACGTAAGAAGGAGGTGATGCTTCTCATTAATTTAAACTACAGTTTCTATGCCAAACTATAAACAGAAATTCacaataaacattacaaatgaacCCGAAGGCAACAAACACTAACTGTAATTGCTTTCCCATTATTTTAATAGAGCTAGAGGGGTGAATCACAGTAAAACATGTACAGGTCATTTCATacccttttgttgttgttactttgaaattataatttgcATAGGAAGCAAGGATGCCTATTTGTGTACCATTAATATTAGTTgcattgtgacattattttagcaagatttttttcctaaatTCTCATGCTTGCAATGCATCcagactttttttattctcacaAGATTCTAAGACTCTCTTCTATGCATACTTCACaactacaataaatataattttttcattttgatataaTGTTCACAAACCCATTGCacttttgtattatatttactgCACAAGTAAACATTCTATGTAGCaatgcaaaaaattataatggttGCTTGCATATTGgatgcttcattttctttttctgcaaaacacaaTAGCTTATTTTTCCTTTTGGCTTTATGCTGAAATTATGACCCAGACAGTCTTTGTGAGATTCACCCCAagagtaattttaatttaagaaattttCTTAAGGGTCAAAAATTATCAGCTAGAAAAGAATGAGATGATAAGTCTAATCAAACATAACATGGTGCATCTGAACCATTTCAAATAGATTGCATTACAAATAGAAAGGACAGAGATTAGTCATTGCGTCACAAAAGATAACATCTTTAAGACAAATTAGattctttacagaaaacatgGCTTGGAAACTTCTCAGTACATATACtggatttataatatttacatacgATACATGAGTCCTCCATATAGACTCCACTGTTAAAGGCCAGGATGTCACCTGGATCCACTTGCATTAATGTCATGCACTATTTATCAGGCCCTTCACATCCTTGTTACCTTCACGGAATGTCAGTCATTATTACGATATGTAGTTAAAGGGGTATTTACTCTCGTCATGGACAGACTGAACATCACTGCCTGTATTCTGAGCGTGTGTATTAGATGTATGCTTGTGTGTACCTCTTAAATAAACCTCTGACACAGGTAGCAGAACAATCAGGATGCCAAAGCCTCCATTATGCACCTGTCATCTGTCCATCAGCTTCTGAAAATCATAAAGAAGTGGCATGCCAGGAAAGGACCGTGTAAACGCTGTGTCTGAACACGCTGTTCTTATTGGCAGAGTACAGAAGTTCTGCTGATGGGGCATCTCAATATGTGGAGGCAGATTTGGAGAGCTGAGCGTGTTCAGGCAAGACCCAAATCCTGAAGATACGTTTAGATACATCTGCATTAGCCAGTGCTTCATTTATGGGTGGGTTCAGAAAAGGAATAAGGGCACAAACCTCATCTTCAACCTCAGTGTGCTCATGCTTGGACTGTTGATCATTTCAGCATGTTCGTTGCTGTCCTTTTACCACAATCAGTTCTTTAGTATGGTTCTTCTGAGATGATCACACATCTCTGATCAGACTCCACattcacagacacacaaataaacacacacaggcatatTTTTTCCTTAGATCCAGGCACAAAGCTTAGAGGCGTCAATCTAACACCGGTCATCCTCATCAGTGTCACTGAGAAGCTCACAGCCTGACGTCCCTGACGTGGCTTGTGCTAGTCGTTTACGGAAATGTCCGTTAGGCACCTGCCAGGTGTGACGTAGTTGTGGAGCGGAGCTGATGGTGTTGGAGCGGCCCAGGCTGGTTGCCATGGCAGCCTCAAAAGTGAGAGTCTCCTCTACACCACTTGAGTCCGGACTGTTAACGTCCTCCTGCAGTGGCAGATACGGCTCCGAGATGTATCGGTGAGGGGTGGAGTGGGCCATGGCGGTGCCTGGTCCCGTCCCGGTTGGTTCCTCACCTTCCTCTGTGGGTTGGGCCCTTGACCGAGCCTCTCCTTGTGTGGGATGAGCACGGCAGACTAACGGAGAGTAGGATATGTGAGGCCGAGGCCGAGAAGGTGTCTGTGGGAGTTGACGGCGCCCTCGAGGTGTCCCTGAATCAGAAGTAGAGGGAATTGGGCTGCTTGAACTATTGCCTGTCTGAGGGTCGTGTGTTTCCTGCCCTCACTGGGGGAACGAGAGGGGCGTCTCTCCTGGGACTGACTCCTTTCTTCTGAGTTGCAGCGAGACACATCTGGAGACAGCAGGCGAGGCATGGAAGAGGCTCGGATAGAGACACCTCTCCCTGGCACTTGCAGAGGATCGGTCTGCATGCTAGTGGGGCACAGCACACTGCTAAATTCTTTGTGCTCTGGCACCTACGCAGttagaaagagaaaaaatggGGAGGAGGTAAAGACATTCAGCCCACAACACTTAGGAGCTCTAAAGCCCCATTCACACCAAGAGCCTTAACAATAGCTATAACGataattatatttgtgtttacagcagtatttggttttttttacacattcagttttaaaatgaacttgcAACAATGCAACTGACTTGCTGCTGCTTTATGCTAGATACCAAAAGAGAAACGACTATCCTACAttagataaagataaaagaGAGACTCTGCTAACAGAGTTTCGCGTTTGAAGAGTCGGTTTATGCTGTTGCATTTACACTGCTTTTACCAGCAGATGTCTTCAACATGCAATATTTTGAGCATATCAGTCAATCTAACTAGTGTAATCTATCTGATTTAACATCGAATTTAGCTAATGCAGCCAATGTAGTAGAATAAAAACTACCGCCTTTTTCAGTACAACTCTAAAGAAGGCAAGACTATGTTGTAGAAACTAGTGCTGTATACGTGAGGTAGTTTTCATGTTTACTCTGTAGAACTTCGTGAtgtattttggtattttaatgTGCAAGctctataaattaaaaagaaaggatGTGAATGTTTTATCGTTCATCagctttaaaaaactgaaactgattccaacaatattgttttttctaTATCTTTATAGTTGTGGTGTGAACTTTTATTCgctcatatttaatataatttttagaaCTTGTGATTCTTGGTGTGAGCAGGCCTCAAATATTGTTGCACCAAGTGTGTAACTGTTAGGAGTGGACATAGAATAGAAATGCAAGGTTATGTACTGAAGTCAAAATAACCTGGCTAATCTTATACTCCTTTTTAGAagcaagtatttatttaaagacaagTTTATACACAAAATGTCATAGAGGAAAAGTAAAGTGGCAAGAGGGAAGCACCATAAGCACAACATAGAGCCAATACATATAAGCAACTCAAAGGGGGTGTAGAAACTTTCAAGCAGAAGCCACACATATTGGGCATACACACAAGCGCTCTAACACAAAAGTGTTCCAAACATAAACCAACCTAAATCCCATAAGATATTTAGTGTTATATCACAGTTCATGGCAGAGAGGCAAAGAAAAAGCTACCAGGAGGGGTATAAAATAAGAGTACGGATAAGAGTACAGAAAGACATCTAAGCTTGTGTATAACTGCTCACTGGTTATATAAGTGCTGGAAGTTATCTGGACCTGGCAGTCTAACCTTGAGAAACCACATCAATACACCCTTccaaaccttaaaaaaacagctctcTAAAATCTCTCCCTTTACAAGGCCAGAAGGCAAATAATAAAGGAATGACAATAAAGctgcaaatatgaaaaaatatgagtAGAAGCATCATGCAGGATTGTGAATCAGAGAGGTGATGTCCATGCAGATGACTTTCTGACAGACTGAAGATCAATGCCAATTACAGTCCGTGCTTTGCAaatcagttgtttttaaaaaaattagttttacttTTCTATCTCTAAAACCTTTACAAATAGATCAGTTACTGGCTGTGTTGTATTCAGACCCTGTTAGCATTTGTCAGTTTTCCAAACAGAATTATTCATGAATTCATCAATTAACTGAGAATGAGCCTGAATTCACATACAATTTGGGAATTTCAATTAGATTGTGAATTTGAATcttgttataaaaaatataaagtagcTATCAGGTATTTCATGCACATgtataaaacaatgaataaaacacatcatGTAAGACATGTAAAAATTAGATGTATTTCTTTGTATATTTAGTTTCTCCTACCATACTCTGAAGGTGATACTGGTGTTGGTATTCATC

Function

symbol description
cacna1e Enables voltage-gated calcium channel activity. Predicted to be involved in calcium ion import and chemical synaptic transmission. Predicted to act upstream of or within several processes, including behavioral fear response; regulation of peptide hormone secretion; and visual learning. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated calcium channel complex. Predicted to be active in GABA-ergic synapse. Predicted to be integral component of postsynaptic membrane and integral component of presynaptic membrane. Implicated in developmental and epileptic encephalopathy 69.

NR:

description
PREDICTED: voltage-dependent R-type calcium channel subunit alpha-1E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91585 True 4672 lncRNA 0.39 3 7274590 7281165

Neighbor

gene id symbol gene type direction distance location
cep350 cep350 coding downstream 105798 7137062 ~ 7168792 (-)
qsox1 qsox1,LOC107665072,LOC107755296,LOC107758006,LOC107699344,LOC107603198 coding downstream 139094 7112136 ~ 7135496 (-)
sin3b sin3b,LOC107755301,LOC107758010,LOC107699271 coding downstream 399625 6860907 ~ 6874965 (-)
def6a def6a,LOC107550223,LOC107755289,LOC107599059,LOC107757990,LOC107700524 coding downstream 414884 6850516 ~ 6859706 (-)
ndufb11 LOC107550213,LOC107665059,LOC107700515,LOC107599058,LOC107755291,LOC107757991 coding downstream 424875 6848473 ~ 6849715 (-)
LOC122350872 soat1,LOC107657858,LOC107758003,LOC107700347 coding upstream 82070 7363235 ~ 7370455 (-)
LOC122350680 LOC107599044,LOC107700337,LOC107757981 coding upstream 93870 7375035 ~ 7377757 (-)
LOC122350884 NA coding upstream 99381 7380546 ~ 7382812 (-)
LOC122350867 bcar3,LOC107707585,LOC107599011,LOC107657879,LOC107699431,LOC107603218,LOC107757998 coding upstream 313818 7594983 ~ 7652306 (-)
LOC122350881 agbl4,LOC107657883,LOC107603279 coding upstream 407696 7688861 ~ 7740456 (-)
G61782 NA non-coding downstream 411636 6862028 ~ 6862954 (-)
G61663 NA non-coding downstream 616306 6657498 ~ 6658284 (-)
G61640 NA non-coding downstream 712672 6561450 ~ 6561918 (-)
G61629 NA non-coding downstream 722879 6551404 ~ 6551711 (-)
G61582 NA non-coding downstream 806174 6467953 ~ 6468416 (-)
G61865 NA non-coding upstream 24947 7306112 ~ 7308340 (-)
LOC122350886 NA non-coding upstream 96590 7377755 ~ 7378459 (-)
LOC122350888 NA non-coding upstream 109123 7390288 ~ 7394209 (-)
G61868 abl2,LOC107599009,LOC107699422,LOC107657876,LOC107707589,LOC107603207 non-coding upstream 264645 7545810 ~ 7548323 (-)
G61959 NA non-coding upstream 381052 7662217 ~ 7663259 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 171597 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 218161 6875349 ~ 7056429 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 457843 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 831608 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 1313484 5919961 ~ 5961106 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 396331 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 835843 8117008 ~ 8232774 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 1111180 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 1366105 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 1371139 8652304 ~ 8657286 (-)

Expression


Co-expression Network