G62824 (cry1)


Basic Information

Item Value
gene id G62824
gene name cry1
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10381717 ~ 10443630 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU92977
CTAAAAGAAGAAATTCTTGCCAAGTCCTCTGTAGCGTGAAAGCTGTTGGTAGATCTGCTTCATCCTCTCGATGTTGAGGCGGCTCGCTTCAGCGTGGTTCACCATTGGTTTTGGGTAATGGACACCAATGATGCACTTTGCAGCGGCTTGCACAGAGTCTGGGGCGTTCCATGGGTCGTAGATGTATTTGGCAGGGAAACCTCGGAGAATAGGTAAATATCgtctgaaagaacaaagaaagattaAACCACAGTCTTATCACAAACATGAGGAAGGTTATGCGAGATGGTTATTGGATTCCCATGTTTGAACAAGCAGGTACAAAAAGAACAACAGAGCTTCTCGGATTACAGCAAGCAGCTTGTGTTAGCGATTAATTTACAGggattttcacacatttaactgtgcaatattgtaattgtgaatgtatactgtatatatacggTCAGCACACCaccataacaacaacaacaaaataacaaatgcaaaagaacTGAAAAATTCAAGCTCTACTGAAATCTGGACTTGCGTCTCTCCTCCAGGTCCCAGGGACAGAAAAGGCCACCTACCTAAGGTGCTCCACCTTACCAGAGCGTGGGGACGGAGGGCTGCAGGAGGCACGGCTCGCAGACAGGCGGACGCAGTTTAAACAGGACAACAGGTCCCGCCTGTGCTGAGACACTACGGAGATTCCTACTACAACACGCATTAGAAAGCAGAGGCAGTGACCAGGCCCTCC
>TU92982
CTAAAAGAAGAAATTCTTGCCAAGTCCTCTGTAGCGTGAAAGCTGTTGGTAGATCTGCTTCATCCTCTCGATGTTGAGGCGGCTCGCTTCAGCGTGGTTCACCATTGGTTTTGGGTAATGGACACCAATGATGCACTTTGCAGCGGCTTGCACAGAGTCTGGGGCGTTCCATGGGTCGTAGATGTATTTGGCAGGGAAACCTCGGAGAATAGGTAAATATCgtctgaaagaacaaagaaagattaAACCACAGTCTTATCACAAACATGAGGAAGGTTATGCGAGATGGTTATTGGATTCCCATGTTTGAACAAGCAGGTACAAAAAGAACAACAGAGCTTCTCGGATTACAGCAAGCAGCTTGTGTTAGCGATTAATTTACAGggattttcacacatttaactgtgcaatattgtaattgtgaatgtatactgtatatatacggTCAGCACACCaccataacaacaacaacaacaaaataacaaatgcaaaagaacTGAAAAATTCAAGCTCTACTGAAATCTGGACTTGCGTCTCTCCTCCAGGTCCCAGGGACAGAAAAGGCCACCTACCTAAGGTGCTCCACCTTACCAGAGCGTGGGGACGGAGGGCTGCAGGAGGCACGGGATTGTCACACATTTAACTGTGCAATATTGTAATTGTGAATGTATACTGTCAGCACACCaccataacaacaacaacaacaaaataacaaatgcaaaagaacTGAAAAATTCAAGCTCTACTGAAATCTGGACTTGCGTCTCTCCTCCAGGTCCCAGGGACAGAAAAGGCCACCTACCTAAGGTGCTCCACCTTACCAGAGCGTGGGGACGGAGGGCTGCAGGAGGCACGGCTCGCAGACAGGCGGACGCAGTTTAAACAGGACAACAGGTCCCGCCTGTGCTGAGACACTACGGAGATTCCTACTACAACACGCATTAGAAAGCAGAGGCAGTGACCAGGCCCTCC

Function

symbol description
cry1 Enables double-stranded DNA binding activity; nuclear receptor binding activity; and phosphatase binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Implicated in advanced sleep phase syndrome.

NR:

description
PREDICTED: cryptochrome-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92977 False 739 lncRNA 0.47 2 10381717 10443630
TU92982 True 972 lncRNA 0.46 2 10381717 10443630

Neighbor

gene id symbol gene type direction distance location
gls2a gls2a,LOC107731259,LOC107668075,LOC107549149,LOC107745788,LOC107695273,LOC107585893 coding downstream 43048 10329776 ~ 10338669 (-)
cpt2 cpt2,LOC107668114,LOC107585892,LOC107731280,LOC107549124,LOC107695271 coding downstream 61344 10316425 ~ 10320373 (-)
tmco1 tmco1 coding downstream 81411 10298359 ~ 10300306 (-)
LOC122350862 aldh9a1,aldh9a1a.1,aldh9a1a.2,LOC107695268,LOC107668102,LOC108441636 coding downstream 84645 10291698 ~ 10297072 (-)
zgc:112962 LOC107695265,LOC107745796 coding downstream 90607 10284492 ~ 10291110 (-)
LOC122349990 gpr37l1b,LOC107731282,LOC107668115,LOC107585901,LOC107695275,LOC107549203,LOC107745785 coding upstream 44160 10487790 ~ 10491200 (-)
LOC122349964 ela2l,LOC107745782,LOC107695279,LOC107549241 coding upstream 82717 10526347 ~ 10528717 (-)
LOC122349966 NA coding upstream 85813 10529443 ~ 10533338 (-)
LOC122350349 nphp4,LOC107695281,LOC107550077 coding upstream 382799 10826429 ~ 10961990 (-)
c8h1orf174 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding upstream 520952 10964582 ~ 10968087 (-)
G62821 NA non-coding downstream 8386 10370333 ~ 10373331 (-)
G62817 NA non-coding downstream 54509 10325741 ~ 10327208 (-)
G62805 NA non-coding downstream 79832 10301662 ~ 10301885 (-)
G62800 NA non-coding downstream 116956 10263818 ~ 10264761 (-)
G62795 NA non-coding downstream 128461 10250633 ~ 10253256 (-)
G62835 alas2,LOC107731137,LOC107555603,LOC107549233,LOC107745783,LOC107667982 non-coding upstream 77029 10520659 ~ 10522487 (-)
G62861 LOC107549259,LOC107745781,LOC107668121,LOC107555602 non-coding upstream 252705 10696335 ~ 10698125 (-)
LOC122350960 NA non-coding upstream 311759 10755389 ~ 10799963 (-)
LOC122351000 NA non-coding upstream 375587 10819217 ~ 10825051 (-)
G62974 NA non-coding upstream 753523 11197153 ~ 11205373 (-)
smim24 smim24,LOC107580287 other downstream 133561 10245196 ~ 10248156 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other downstream 339948 9995547 ~ 10041769 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other downstream 412232 9954681 ~ 9969485 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other downstream 673096 9700394 ~ 9708621 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 1118891 9257243 ~ 9262826 (-)
trnar-ccg_26 NA other upstream 96589 10540219 ~ 10540291 (-)
cep104 cep104,LOC107668088,LOC107745778 other upstream 529675 10973305 ~ 10990735 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other upstream 652510 11096140 ~ 11131238 (-)
smim1 smim1,LOC107668050 other upstream 688040 11131670 ~ 11169473 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other upstream 840724 11284354 ~ 11345988 (-)

Expression


Co-expression Network