LOC122350960


Basic Information

Item Value
gene id LOC122350960
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10755389 ~ 10799963 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU93074
TTCTGGTCCACAAATTTCCACAAACTTACCACCAGATATCATTTCCTCACCAAAGTGATTCTTGCACCACACTATTTGTATTTCACTCTGGACTTCAGTTCCCATCATCCATAgcactgatgacacacacatacctgATTGCACTCATCTCACGCTCACCTGCATTCAATGATGCACAAACTGTAAATAACAGTTTCTCTCTCCGCTCCACGGTGAGTATTGATCTGCATTTAGCACTCTCCTAGTGTTAGCTGCCTTGCTgtgccattgttttttttttgttgttgtttttttagtctCCTGTATTGTCTAGCATGTATCGCTCTCCCACTGATAGCTACATTATGAAGCCC
>TU93075
CCTGTAGTGTGTGGATAGGTTGAAAGACTAAATGGACTCAAAGGCAAGCACGTCTTCTCAAGAACTCAGAGGTGGTTTTTGTAGCCGGTGCTTTGATGTGTCTCTTTGTGTGTACCTTTGCCCTCCTTTTGATTGTTCCCTCTCTGCTTTCCTGGATGTAAACACCTACACAAGCTGATGTGTCACATTagtttcaaacaaaaacaagtaaaaaaccTTTTGGTAAAGGCTGGTGGCTCATCTTCTAGGACCCTGAAGAAAGTCTTCACATGCTTACATTCAACCGATTTATCGTACTTTTGATGCTACATGTAAATACTCGCTgttattgatcttttttttttttttcaggtagtTTTCCTTTATGTAGCTTTTCCTGG
>XR_006251661.1
CGCGGTGCACGGACAAATAACGGGAACAACGTTTTATACGACTGTTACACGCTCCATTCTTCCATGCCATTCACTTTTTACCACAACCTTGCAAATCTGGGTTTTGTTTCAAGCGCCGAAAGAAAACGTCGAGCACGCAACAACGCGCACGTGCAAGAGCGCGATCGGAAAGGAAGGCGTATCTCCAGCGGCGTTCAGAAAAACGATGTTTCTCACTTGATTGCCAAGCCTTGCGCTTTAGTCATTAGTGCAATACCTCAAAGCAGCAACACGTTTCTTCCCCCTTCTGGATGTGCCCCTCTAGGATTCCAAAAATCTGCAGCGCTCTGAGGCCCAGTGCATCCATGGAAACTCTCCATAAAACACCTGTCAGACCTGCTCCAGTTCAAACACCTGCTGCAGGAATCGCAGTTTACCATCGGGGTTCCAACAGAGCGCCTGGGAATATCAGACAACTGGTCTGTCTAGTCAGTGCAGTCGATGCAGAGATGGGACTGCAGCCGTGAGAGAGGGAAACTCAGCAAAGACGAGCAATTAGGCCTGTGGCAGAAGTCCAGCCACCCCATGCCTCAGTGTGCGGATGTGTTTGAGCCAACGACTGGCTAAAGTTCCTGTAGTGTGTGGATAGGTTGAAAGACTAAATGGACTCAAAGGCAAGCACGTCTTCTCAAGAACTCAGAGGTGGTTTTTGTAGCCGGTGCTTTGATGTGTCTCTTTGTGTGTACCTTTGCCCTCCTTTTGATTGTTCCCTCTCTGCTTTCCTGGATGTAAACACCTACACAAGCTGATGTGTCACATTagtttcaaacaaaaacaagtaaaaaaccTTTTGGTAAAGGCTGGTGGCTCATCTTCTAGGACCCTGAAGAAAGTCTTCACATGCTTACATTCAACCGATTTATCGTACTTTTGATGCTACATGTAAATACTCGCTgttattgatcttttttttttttttcaggtagtTTTCCTTTATGTAGCTTTTCCTGGGGTATATAGGGCTCTGCTCACCATCATCAAAGTTCGATAGCAGCAAGGTTTAGGAGCCAGTTTGGCAGCCTGTCTCCAGCACCAGCCTAACTGGAAAATGAGTAAGATTATGTTtcaagatactttttttttctcatgccTGCACGTCTCCCTTGCTTGCTCATAGGCATTGCTAGGCCATATTTACTGTAGGAGGACATCTTTCATCTCAGACCCTCTAAAAAAGTTGATTTTACTCTGATGtcagcactttttaaaatcagtgaTTATGCAATCTTAATGTTTACTGAGAACAGCTACTGCAGAAAGCTATCTGAGGTTATTTCACTCAGAATCCTCTCCTTATCAGATGTTTGAAACATCCCTGTAGTTTCTGGCGGACATGGTCTAAAGGTGACGTAAGGTGGCAATGCTTAAAGCTGTCACAGGTGTCTCTTGCTTGAATTCTTGTTGCATTGAAATCCGAAAAAAATTAGTAATTTGTGTTCAAAGGGAATTTAGTACAATGGCAGTATAAGTGTCATGATTCTGGTCCACAAATTTCCACAAACTTACCACCAGATATCATTTCCTCACCAAAGTGATTCTTGCACCACACTATTTGTATTTCACTCTGGACTTCAGTTCCCATCATCCATAgcactgatgacacacacatacctgATTGCACTCATCTCACGCTCACCTGCATTCAATGATGCACAAACTGTAAATAACAGTTTCTCTCTCCGCTCCACGGTGAGTATTGATCTGCATTTAGCACTCTCCTAGTGTTAGCTGCCTTGCTgtgccattgttttttttttgttgttgtttttttagtctCCTGTATTGTCTAGCATGTATCGCTCTCCCACTGATAGCTACATTATGAAGCCCTTCCGTTTTACCTCAGTTAAATTTAAAGTCTAGTTTAGTTCCTCTCCTGGATTAtctgtttttgattatttgcCTGTGCGTTTCGGATTAACCCTTGCTGTTCTGACTCTGTCTGCTCCTTGTTTGAATTCACTGCTCCTGTTAACAGATTACCCCTCTTGTCAAGCCCTCTGAATATTGTACGCTGATCGAAGACTCACACATATGCCCTAAGAATACTCTTGTGTCTCGTCCATGCCATACCAGTGTTTGACCCTGCCAGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93074 False 353 lncRNA 0.42 1 10755654 10756006
TU93075 False 380 lncRNA 0.40 1 10756533 10756912
XR_006251661.1 True 2134 lncRNA 0.44 4 10755389 10799963

Neighbor

gene id symbol gene type direction distance location
LOC122349966 NA coding downstream 222051 10529443 ~ 10533338 (-)
LOC122349964 ela2l,LOC107745782,LOC107695279,LOC107549241 coding downstream 226672 10526347 ~ 10528717 (-)
LOC122349990 gpr37l1b,LOC107731282,LOC107668115,LOC107585901,LOC107695275,LOC107549203,LOC107745785 coding downstream 264189 10487790 ~ 10491200 (-)
gls2a gls2a,LOC107731259,LOC107668075,LOC107549149,LOC107745788,LOC107695273,LOC107585893 coding downstream 416720 10329776 ~ 10338669 (-)
cpt2 cpt2,LOC107668114,LOC107585892,LOC107731280,LOC107549124,LOC107695271 coding downstream 435016 10316425 ~ 10320373 (-)
LOC122350349 nphp4,LOC107695281,LOC107550077 coding upstream 26466 10826429 ~ 10961990 (-)
c8h1orf174 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding upstream 164619 10964582 ~ 10968087 (-)
LOC122349916 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding upstream 334740 11134703 ~ 11137541 (-)
LOC122349917 cep104,LOC107668088,LOC107745778,LOC107695283 coding upstream 341220 11141183 ~ 11159286 (-)
lrif1 NA coding upstream 423077 11223040 ~ 11228121 (-)
G62861 LOC107549259,LOC107745781,LOC107668121,LOC107555602 non-coding downstream 57264 10696335 ~ 10698125 (-)
G62835 alas2,LOC107731137,LOC107555603,LOC107549233,LOC107745783,LOC107667982 non-coding downstream 232902 10520659 ~ 10522487 (-)
G62829 NA non-coding downstream 270790 10383720 ~ 10484599 (-)
G62824 cry1 non-coding downstream 311759 10381717 ~ 10443630 (-)
G62831 NA non-coding downstream 321273 10431781 ~ 10434116 (-)
LOC122351000 NA non-coding upstream 19254 10819217 ~ 10825051 (-)
G62974 NA non-coding upstream 397190 11197153 ~ 11205373 (-)
G62977 NA non-coding upstream 401732 11201695 ~ 11210161 (-)
G62992 NA non-coding upstream 476396 11276359 ~ 11276914 (-)
G63014 NA non-coding upstream 606991 11406954 ~ 11441996 (-)
trnar-ccg_26 NA other downstream 215098 10540219 ~ 10540291 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other downstream 275338 10440764 ~ 10480051 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other downstream 363346 10389183 ~ 10392043 (-)
smim24 smim24,LOC107580287 other downstream 507233 10245196 ~ 10248156 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other downstream 713620 9995547 ~ 10041769 (-)
cep104 cep104,LOC107668088,LOC107745778 other upstream 173342 10973305 ~ 10990735 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other upstream 296177 11096140 ~ 11131238 (-)
smim1 smim1,LOC107668050 other upstream 331707 11131670 ~ 11169473 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other upstream 484391 11284354 ~ 11345988 (-)
G63095 NA other upstream 762315 11562278 ~ 11615925 (-)

Expression


Co-expression Network