G63316 (slc6a17,LOC107668054,LOC107731213,LOC107712000,LOC107678997)


Basic Information

Item Value
gene id G63316
gene name slc6a17,LOC107668054,LOC107731213,LOC107712000,LOC107678997
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12131491 ~ 12134728 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU93764
gtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtaatatatacttttgagagagagagagagaaaaaaatattgcataagcTATCGTTTAAAAGTTTGtagtcagatttatttttttgtggtctTTAAAAGCCAATGCTTAGCAGTGCTGCATTacattaatactgtaaaatattacattttacaatgtattttaatgtatttactgtcactttatctatatctattttatttaatgcatccatgctaAATGAAAGAATTTCATTCTCATAACATTTcgctaaacaaaaacatttgattggTAGTGTGTGCTTGTAtataagcatttattaattaaataatcacCTCTGAGTTGCTGAAATGTTTCTCCCTCCTCCAAAAAGTCTTAAAATACCAGATCCTCACAAATGACCTCATAATGCATTTTGCACACGTATACCTCTGCAGTATGTTTAGTGACTCTGACGAGAATATGTGTCTGTAATATGGCCCCAGAACAGCAAGTTTGAAAACAGGCAGTGTTGAACAAGGGCCAAATGCTTCTCTGTGCTCTTCAGTAAATAATCTGACATTGGCATTTGTAAAGCATAAGCAAACACCACTTAACCATTTACATGTGTTGTGgtttgaaatttaaaaacagGTTTCATTCCCTATTTGGAGCATACCGTCTCCATCCtaaatgtcactttaaataattatataggCCTAAAATAGTTCAATCTCCACCAAGCATGATAACTGTAAGTATAAAGATTAAGTTAAGTTAATAGCACAGCAAATGCAGATTTCTCCACATGTTTAGAACCGGGCTTCAAAGTAAACCTCTCAATGGCAAATTTCATTGCTATTACTGCCACTGCTGaagtggaaataaaataataatttttatgtaatttattaaataatagttattgTGCTTGGCGGAGTTTACTTGGCTCAACCGGCACCCCTTATTGCATCCTGAAAACGTCATTTCTTGTGCTGTGTGGAAATCGCCTCTATCAAGAAGTCAccatttgttttgattattaaaaatgaaaacatctaggtaaaactttccaaaaaatcacaattaaatcCAGTTGCAAAATCAGCCTGAACCCAAcacttatactgtatatatttgataCTGCACTGAGACTACATACATATGTGCTTTGTGTATGAATACATATGTCGCCCTCTTGTGCTGAGATGTGGACAGGACAGACTGTTGATGTGCAAAGTCTATAACCGAgaacacttattaaaaaaaaaaagacgaacTTCAGTCGCTAACAGAAATCAAGCTATCAATTCACTCTACTCTCAGGTGGTCTGTATTTAACAGTGACACTTACATAATATCCACTAGAGGGCTCATTATAAGAAGTGAAAGCTGTAGTTTCTCTGAGCCCCTCTGAGTCGTGTCCCTTTAGCTCTAAAGATGAGTTTAAATGAAATTCCTTGCATGGCATCTCGTATCTTGCGCATTTTTGTAAGATGTCTAGATTTCAGCAGCATTGGTAACACCTTAACCTGAGCGATAACTATGACCCGCGGCTCTCACCATCCCTATGACCCTGAAAAAGTCACAGAGACCAACCCTGAAGCTTGAATGTTTGAACCCTTATCTGTATGCAAAAAATAACTTACCAACTCACCAAATAAGCCACCTTACATTCTGATCTGTCTTTCAACATCTGTAGTCCGTATGAATAATTGGGCTCAGGGGAACCTGTCTAGGAAGGATCTCTGTGgctctctgtctgttttcttGTTGCCCTGCTCCTTCGGATGGTTTGGGTTAAGGTGTGACCAACACTAGGACCTTCTCATCTGTTCAGcatcttctttctctttccgtCTCAGTCTCTGGTCGGTGGGTTGGAGGATCATGACTCAGATTTGGGAGGGGCGGGGTTGGTCTGGTAACCGCTGCCATAGCCACTGATGGAGGTAGAGTTGGTGATGAGCTCCACAGGAGAGGTGCTGCCGGGGCCCAGATAGGCCCTGTGGCTGGGCATGGGAGAAGGTGCTTCGCTGGGGTTCTTCCCCAGGATGAACCTCGTCTCATCTTCCAGGGTGGAAGCCTCCTTTGCCAGGCTCTTGCGGTAGGAGACGGACAGCTTGTTGGAGCCGTCTGGGATCCAATTGAAGTGACGGGCAATAAAGACCAACGGAAGGGGAAGCATCGCCACAATGATCAGAGCAAAACACATGGCCAGTGCCCAAGGAGGATAACTCTGAAACCTCTCTGTGGCCTGATTCAGGTCTTGCACCCATGCATTGTATCCCGGAGGGCTGATGGCCATCTCTACCACACTAGCAGAAATCAGTATGAGCAGACACACTGGAGACACATACTTCCACaggtaaaagtaaataatggACGGTCTGAAACCCAGCATGTCTTCCAGATCCTGCATGAACCTGATGAGCGCCACAAAGCAGGCAGAATTACAGCATTGATCAATATCAG

Function

symbol description
slc6a17 Predicted to enable symporter activity. Predicted to be involved in neutral amino acid transport and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in synaptic vesicle. Predicted to be intrinsic component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human SLC6A17 (solute carrier family 6 member 17).

NR:

description
PREDICTED: sodium-dependent neutral amino acid transporter SLC6A17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93764 True 2463 lncRNA 0.41 2 12131491 12134728

Neighbor

gene id symbol gene type direction distance location
alx3 alx3,LOC107680275,LOC107711935,LOC107731154,LOC107591866,LOC107668019 coding downstream 39829 12085919 ~ 12091662 (-)
rbm15 rbm15,LOC107731203,LOC107680058 coding downstream 48453 12078239 ~ 12083038 (-)
zgc:110353 zgc:110353,LOC107680259,LOC107711939,LOC107591867,LOC107668023,LOC107731165,LOC107550464,LOC107711928 coding downstream 118341 12010488 ~ 12013150 (-)
adora1b adora1b,LOC107550463,LOC107711940,LOC107668012,LOC107591868,LOC107731293,LOC107680252 coding downstream 148182 11977200 ~ 11983309 (-)
dclre1b LOC107731274,LOC107668110,LOC107550475,LOC107712006,LOC107678930 coding downstream 156662 11970741 ~ 11974829 (-)
kcnc4 kcnc4,LOC107731196,LOC107668031,LOC107711934,LOC107679013,LOC107591816 coding upstream 15259 12149987 ~ 12168140 (-)
hspa1b si:ch211-199o1.2,LOC107668030,LOC108442126,LOC104926754 coding upstream 34159 12168887 ~ 12171370 (-)
ahcyl1 ahcyl1,LOC107731197,LOC107668032,LOC107591817,LOC107679038 coding upstream 37461 12172189 ~ 12189485 (-)
nfyal LOC107731273,LOC107711997,LOC107591820,LOC107668092,LOC108265435,LOC107679058 coding upstream 55279 12190007 ~ 12197235 (-)
sort1b sort1b,LOC107550487,LOC107668073,LOC107731125,LOC107591814,LOC107679020,LOC107711994 coding upstream 64883 12199611 ~ 12213569 (-)
G63350 NA non-coding downstream 108738 12022515 ~ 12022753 (-)
G63347 NA non-coding downstream 111538 12019711 ~ 12019953 (-)
G63344 NA non-coding downstream 114140 12016726 ~ 12017351 (-)
G63304 LOC107549947,LOC107731153,LOC107668018,LOC107591857,LOC107745734 non-coding downstream 275429 11855745 ~ 11856062 (-)
G63254 LOC106565120 non-coding downstream 308247 11821284 ~ 11823244 (-)
G63329 LOC107711999,LOC107550488,LOC107668094,LOC107731126 non-coding upstream 24461 12159189 ~ 12198367 (-)
G63395 LOC107591850 non-coding upstream 168000 12302728 ~ 12304329 (-)
G63404 NA non-coding upstream 197728 12332456 ~ 12334605 (-)
G63406 NA non-coding upstream 201038 12335766 ~ 12336021 (-)
G63407 NA non-coding upstream 201386 12336114 ~ 12336823 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 76961 12051357 ~ 12054530 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 352240 11778271 ~ 11779251 (-)
G63095 NA other downstream 515566 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 785503 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 962018 11131670 ~ 11169473 (-)
G63385 NA other upstream 128966 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 207432 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 354469 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 850926 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 1051139 13185867 ~ 13246130 (-)

Expression


Co-expression Network