Gene
RNA
| Item | Value |
|---|---|
| gene id | G28980 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 9209107 ~ 9211614 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU32780 | True | 2487 | lncRNA | 0.41 | 2 | 9209107 | 9211614 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_09173580_09175411 | NA | coding | upstream | 33450 | 9171752 ~ 9175657 (+) |
| CI01000004_09002274_09004879 | IMPA1, IMPA1.3 | coding | upstream | 204084 | 9002042 ~ 9005023 (+) |
| CI01000004_08996083_08997863 | NA | coding | upstream | 211244 | 8996083 ~ 8997863 (+) |
| CI01000004_08987501_08991239 | NA | coding | upstream | 217638 | 8987158 ~ 8991469 (+) |
| CI01000004_08976512_08980033 | TTPA | coding | upstream | 228149 | 8976254 ~ 8980984 (+) |
| CI01000004_09224465_09224950 | NA | coding | downstream | 10865 | 9222479 ~ 9224956 (+) |
| CI01000004_09340611_09363638 | TESK2 | coding | downstream | 127926 | 9339540 ~ 9364254 (+) |
| CI01000004_09371639_09375356 | NA | coding | downstream | 160025 | 9371639 ~ 9376005 (+) |
| CI01000004_09378220_09381425 | NA | coding | downstream | 166190 | 9377804 ~ 9381823 (+) |
| CI01000004_09383327_09385444 | ELOVL8A | coding | downstream | 171713 | 9383327 ~ 9385494 (+) |
| G29010 | NA | non-coding | upstream | 166861 | 9041084 ~ 9042246 (+) |
| G28999 | NA | non-coding | upstream | 184855 | 9024052 ~ 9024252 (+) |
| G28994 | NA | non-coding | upstream | 188046 | 9017805 ~ 9021061 (+) |
| G28992 | NA | non-coding | upstream | 225404 | 8983490 ~ 8983703 (+) |
| G28989 | NA | non-coding | upstream | 235469 | 8971829 ~ 8973638 (+) |
| G30120 | NA | non-coding | downstream | 85642 | 9297256 ~ 9297656 (+) |
| G30129 | NA | non-coding | downstream | 96546 | 9308160 ~ 9309854 (+) |
| G30130 | NA | non-coding | downstream | 98745 | 9310359 ~ 9310561 (+) |
| G30131 | NA | non-coding | downstream | 98983 | 9310597 ~ 9310821 (+) |
| G30111 | NA | non-coding | downstream | 111944 | 9323558 ~ 9326704 (+) |
| G28859 | NA | other | upstream | 609504 | 8599235 ~ 8599603 (+) |
| CI01000004_08414451_08436256 | NA | other | upstream | 757880 | 8414316 ~ 8439933 (+) |
| CI01000004_07654234_07655677 | MRPL34 | other | upstream | 1552724 | 7654234 ~ 7656383 (+) |
| CI01000004_06571261_06572539 | SEP15 | other | upstream | 2634686 | 6570771 ~ 6572667 (+) |
| G30797 | NA | other | downstream | 1285762 | 10497376 ~ 10497788 (+) |
| G31710 | NA | other | downstream | 2425637 | 11637251 ~ 11642400 (+) |
| CI01000004_11666900_11667179 | NA | other | downstream | 2453159 | 11666900 ~ 11667659 (+) |
| G31865 | NA | other | downstream | 2980516 | 12192130 ~ 12197418 (+) |
| CI01000004_12646972_12652534 | NA | other | downstream | 3431140 | 12646838 ~ 12652570 (+) |
