LOC122350953


Basic Information

Item Value
gene id LOC122350953
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 17320376 ~ 17401228 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU95703
cacacacacacacacacacacactcacaagagaagagagaggagagaggagaggagagagaggcttTGGGCATTCCCTCACATTCCACTTGACAGATCTGCGCGGTGAAGCTGCTGCTCCTGTAGTGAGTGGAAGAAACGCATATTCTCCTCAGCGCTCGAGGAGGATTCATCACGAGAGCACAATGCAGGAGGATGGCAAGGTGGTGGATGGCAGTCTTCTGGGTGATGCCAATGGGGTGGAGCCTGGCACGGGTCGACAGAAAGAGAGCGGCAAATGGCAGAGGCCTCGATTCACGCGGAAAGCCCTCATGAGGTGCTGCCTGGTCAAATGGATCATCGCCAGCACCGGACCCAAAGAGCAAGgTGGCATCTGACAGAGACCAAGTCAAAATGATGCTATGATGTTCAGAACGCTCAGCTGGTGCCGTC
>TU95704
CATAGCTTTAATTCCCAGGCAGTCAGGATACGTTCAGATATATACAGCAGAGCTTTGTCAGGACTCTGAGGATCTCACTAGCTGTTTGGTTTAGATTACTGTCCACGTCTGGATTGGGAGGTGTAATGTTATCCAGATAACAAATCAGCAGTGTGTTCTACATTGGGTCACATTGAGACTTTTCTGCACTGAGCAGCAAAACCCTCCAGCTCTGGATCTGAGGAAGTCGTCAGCAGACGTTACTGAAGACATGGAGGACTGTAAGAATGAGTGTCAGAAGGAGTTGGCCAGCATGCTGAGCTGCTTTTTCGGTTTGGTCACCGGCTCTTTTGCCAGAG
>TU95705
agaaagagagagagaggagagagaggcttTGGGCATTCCCTCACATTCCACTTGACAGATCTGCGCGGTGAAGCTGCTGCTCCTGTAGTGAGTGGAAGAAACGCATATTCTCCTCAGCGCTCGAGGAGGATTCATCACGAGAGCACAATGCAGGAGGATGGCAAGGTGGTGGATGGCAGTCTTCTGGGTGATGCCAATGGGGTGGAGCCTGGCACGGGTCGACAGAAAGAGAGCGGCAAATGGCAGAGGCCTCGATTCACGCGGAAAGCCCTCATGAGGTGCTGCCTGGTCAAATGGATCATCGCCAGCACCGGACCCAAAGAGCAAGGTAAGACGGAGAAGTGCTGGAAAGGGCACAGGAGGAAATGAGGTTTTAGGAAGGCCTGCTGATGAGGAATGTCTACATATTTGAC
>XR_006251657.1
gagagaggagagaggagaggagagagaggcttTGGGCATTCCCTCACATTCCACTTGACAGATCTGCGCGGTGAAGCTGCTGCTCCTGTAGTGAGTGGAAGAAACGCATATTCTCCTCAGCGCTCGAGGAGGATTCATCACGAGAGCACAATGCAGGAGGATGGCAAGGTGGTGGATGGCAGTCTTCTGGGTGATGCCAATGGGGTGGAGCCTGGCACGGGTCGACAGAAAGAGAGCGGCAAATGGCAGAGGCCTCGATTCACGCGGAAAGCCCTCATGAGGTGCTGCCTGGTCAAATGGATCATCGCCAGCACCGGACCCAAAGAGCAAGgTGGCATCTGACAGAGACCAAGTCAAAATGATGCTATGATGTTCAGAACGCTCAGCTGGTGCCGTCTAGTGGTTACATGGGGAAACAAACTGGTCTGACGCATTAGCTCGTGTGAATCAGACGCATTTAGTCATGTTACGTGCACAATATTAGAGgacaaaatgcttttatgaatgtttatacatttttaatgaactgattTTCAACCAAGCAGCTGCGATGTGTACATAATAAGTATTTGTCATGATGCTGTattgatttaattgtttttttcgcTCTCGAGATTGCTGAAAGAGCTCAGAGAATAACCCATAAGAGAGCTGAGAGAGACACTGAAACAGTTTGTGGCACCATTAAAAGAAAGTGGTATTCTAGGCAGGATCAGGAAATCAGAGATTGGCTTGCAAATGGGGAAATTAGAGAGGGCTATAGGAAGAGTGAAAGAAGAGACAAAGGATAAGAAGTGTATCAGATTTAAGCTAGTGGCCCTATATATTTACAATGCTTAAACCACgccttaaaaatgtataaatgttaatttatcagattcaatttttattctttaaagctatttaaaatcttaatattgCCTATACTATGTAATGAATGATGAACATTTATGGCTGGGGTTTAAAATTGAGGGTCTGGGG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95703 False 431 TUCP 0.55 3 17323060 17343739
TU95704 False 338 lncRNA 0.47 2 17320376 17320972
TU95705 False 413 TUCP 0.54 3 17325044 17401228
XR_006251657.1 True 981 lncRNA 0.44 3 17322476 17343705

Neighbor

gene id symbol gene type direction distance location
LOC122350717 rimbp2,LOC107684511,LOC107753130,LOC108247306,LOC107081823 coding downstream 484816 16763297 ~ 16835560 (-)
LOC122350716 LOC107550565,LOC107659586,LOC107723226,LOC107723224,LOC107550564 coding downstream 912978 16398576 ~ 16407398 (-)
setd1bb LOC107659604,LOC107550568,LOC107753154,LOC107669245,LOC107555095 coding downstream 956432 16353908 ~ 16363944 (-)
LOC122350700 LOC107550582,LOC107723237 coding downstream 975882 16313504 ~ 16344494 (-)
LOC122350711 LOC107550583,LOC107555108,LOC107669256 coding downstream 1128032 16191087 ~ 16192344 (-)
rflna LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding upstream 54914 17456142 ~ 17464579 (-)
prnpa LOC107736233 coding upstream 139598 17540826 ~ 17543078 (-)
rassf2a rassf2a,LOC107687959,LOC107553834,LOC107742747 coding upstream 151292 17552520 ~ 17567609 (-)
slc23a2 slc23a2,LOC107753122,LOC107687958,LOC107684505 coding upstream 168192 17569420 ~ 17597847 (-)
crybb2 crybb2,LOC107565327,LOC107753119,LOC107684510,LOC107553840,LOC107687964,LOC107748132 coding upstream 295947 17697175 ~ 17699415 (-)
G64634 NA non-coding downstream 275405 17044454 ~ 17044971 (-)
G64582 NA non-coding downstream 629862 16651558 ~ 16690514 (-)
G64599 NA non-coding downstream 636573 16683237 ~ 16683803 (-)
G64556 NA non-coding downstream 658965 16558068 ~ 16661411 (-)
G64531 NA non-coding downstream 860046 16459957 ~ 16460330 (-)
G64724 NA non-coding upstream 9781 17411009 ~ 17412872 (-)
LOC122350842 NA non-coding upstream 256581 17657809 ~ 17660978 (-)
G64757 NA non-coding upstream 260121 17661349 ~ 17665132 (-)
G64777 NA non-coding upstream 344457 17745685 ~ 17745924 (-)
G64942 lzts1,LOC107712471,LOC107687967,LOC107550927,LOC107554439,LOC107753115,LOC107703152 non-coding upstream 628307 18029535 ~ 18032726 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other downstream 223581 17046467 ~ 17096795 (-)
LOC122350093 NA other downstream 910680 16407834 ~ 16409696 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other downstream 1619480 15649226 ~ 15700896 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other downstream 2036246 15283861 ~ 15284130 (-)
G64228 NA other downstream 2538666 14779531 ~ 14781710 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other upstream 200030 17601258 ~ 17645511 (-)
LOC122350290 LOC107569538,LOC107747839,LOC107554410,LOC107703160,LOC107694233 other upstream 706225 18107453 ~ 18112701 (-)
G64967 NA other upstream 753907 18155135 ~ 18157543 (-)
tbc1d10aa tbc1d10aa,LOC107657331,LOC107712481,LOC107550973,LOC107753095,LOC107703173,LOC107554420 other upstream 989435 18390663 ~ 18401938 (-)
G65033 NA other upstream 1158439 18559667 ~ 18560334 (-)

Expression


Co-expression Network