gpat2 (gpat2,LOC107712449,LOC107550920,LOC107657318)


Basic Information

Item Value
gene id gpat2
gene name gpat2,LOC107712449,LOC107550920,LOC107657318
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18565699 ~ 18600484 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU95980
GGTTCTTTGAGCataaattaaacagttttaaccaTTTAACCACCTACGTGGATGCCGATCGCTTCACTAGAGATGCTTTGTCTTTAATGTATTATCAATCCCGCTGGATTTCTGAGGAATCCTACTCTGCTCAAGACTAGATCCTTGATGTTTTATAAGAGAGGTGCTGCACACCAAATTGTGTTCCAGCTTTATTCAGAAGTCCTGGTTACATGGCATCGATGTGTTTCTGTCAATCTTCTGTAGAGAGCTCATCTGTTGACTTGGTGAGAATGGTGATCCTTACCTTCATTGATCTTGGGGTAAGTGATTCTGTACATCccgatttattatttacacacacacacacacacacacacacacacacacaaatgtgtgtgtatatatacagaggCTGTAAATAAAAGTGCAAGGCCAGAGTAAAGTGTGGTGATACGTAGCAGGTGTTGTAAAAAAGAATGATTAATTCGGCCTCTGGAGACTAAACGGTATTTCTGTTTCTGTGCTTTAGGTGTTGATTGAGGACGGCCAGAGAGAAGATGCGTATCTAGATGTCAGTCCTCTCTTCTCTCAGTGTGCTCACAAAGAGAAACTCTTGCGGTTTTTCAAACAGTTCATGTATAACTGAAAGAGAAAAGTAAGAGATTCAAAGAGAAGTCAGTCTCGGCCGGGAATTATAACAGTAAGCACTTCTGAAATTCTTGTTCTGTTCTTCAGAGTTGTGTAAATCATTAATTATgaatgcttttttgtgtttatacttCTATTTTGCTTAGCGTACTTGCTTTTTATGTGATGCTGAGGTTGCTTTTTTGTTAAGTTTTGTTGTTGAGAGCCCAGAATTGGTTTAGTTAATGGATAGATAATGTTCTCCGTTTATAAAGAGCAGATAAATAAAGAGTGTGCTGTTTGTTACTGTTCTTTTAACTGTAATGAATATGTAACGGGCTTGGTTCAGTATTTAAGTTTCTGATAATTGACCCAGTTGCAGTCTTTCTGTCACGGTTTGATTTATAGTTTAGCCACACAGCGCTGCATATAACTGTTCATATGTATGGTAACATTCTGCATTACATAAACTTTAAGATGATCACATGCATTTTCTTACTATGTATATTCTGCTTCCATTAGCACTGAACAGCAAAATATCATTTACCTGATTCTTGAGACCTGAAACAAAAGGGGTTTTGCTTTTACATTTccatagttttaaaaatagtcCCAGTTGCACTTTAAAATGAGTCTAAGATAATCACGAAAATGTGTATATGGaaagttaaataattatttgcaaaaaaagacgaatacataatatacattatataattctGAACATTATTGCAATATGAAAAGGATCAATACTAATATGTCATATATCTACATtgttattctaaaaaaaaatctaaaattaacaaataaaataataataaaataataataaaccttttaaaataaatgagtataATGAAAGTTTATCtgctaattaattattatatatttttattttatatataaaaatagaaaattaaaaactgctcaataacaaaaaaaatgtttgggatTTTCAGAACACTTTTCATTGATCATGTGACGAAGAGGATggtctttttttgctttttaacacAGCAAGAATTTTCAAAATTTAATAGACagctaaaaaaatttatttagacTACACGATTGTTTTCAAAAGTTATAACCCTGTTTCGatgctgtatttataaatatgtcagATATCTGGCATATTTATGtcttgaaagaaaaacatttttacttgaaaatataaatgaacagcTCCGAACAGTTCCTCTGTGATTCCAGTCCAGTTGAGTTTCAGGAGGTTTTCTCTAAATGGACTATTGATGGGTAATAATCATGACGGATGCTGCAGAGACACGGGCACTGCACTATCACTCCCTGGAAATGACTTTGGCTCTCTATATATACCCATCTCCTGACAGTCTCATA
>XM_043247907.1
CTGAAACGCACCTCCTCATACAGTATGCAGTTTTTATCatctgtaatttttatttcctCTGATGGTAGGACAGAGACTCGAAAGAATCATGGACCACGTCAGCGAAAATCCTTCCAGTTTCCAGCCCAAACGCCCTGCGCTGTCGTGGGGTGCGAAAATCAAGAGGAAGCTGAAAAACGTGGCTCCTTTCCTGGGCAGGTTCAGGCCGCTGGTTGGACAGTGCTGTCACCAATGCACCCCGGAGAGTCTGGGTCTGAAGTTGCTGCGTAACACTCCTCCTCTGGGCTTTCAGAACCTGACGTGTGTGAACGAGACACACACCGGgtacCGTGGCTGGTTAGTAAGGAGGGTGTGCTGCTTGCTGTTTGTGTGGGGTTGTGAAGTTCACCCCAGCCCTGCTGGAGACAGACGGCACAGAGTCCACGGCAGCGAGAGAGTGAGGCAGGCTTTGGTGATGGTATGTTGCCCAGATGAAACCAAGGCGATGGAGCAAGTGATGCCTGAAGTCAGAAGTCATTTAGACAGATTTTTGACCCTCACACAGACCTTCATCTCCCCCTGGCTTCTCAGGCTTGTGAGCTGGATGCTGCTGAAGTTCTTCAGTTTAATGTTCTGCAGCGTACAGGTCAACCTCAACCAGCTGGCAGCTATACATCATGCCACACAACTGaaacATCCACTGgtctatgtgtgtgttcagcagagCGGCATCGATCACGCTCTCATTTGTCTGACTCTTTTCTGCCACAACTTGAGGGTTCCCTACACCATTTACCCAGCCCACGTCCGACAAACCTGGCTAagGTCCATCCTTCAGAGGCTGGGTGTCGTCTTGCTCCCAGAAGGCAGTGGCTCAGAGCGAGACGCTGAGATGGACAGCCTCTATTCTCCAGTCATGACCTCTTTTATTGGTGAGCTGCTACGAGAGGGGGCCGCAGTGAGCGTAGGCATCGGTGCGTCCGGAGGTCATGGCGGGCAGTGGCTAGCTCGTGTACATCAGGCCATCAGTGACGGTCTAGTGCCTGATGTTAGCGTTGTGCCAGTGGGTGTTTCCTACGATTGCCTGCCACGCTATTTTACACGTCCACAGGCCGGCCTGATGTCTGCTTTGCGGTTTGCCGTCTCCCTGCTGAAGGGTGATCACAGAGGAAGTGTTAGGATCCATTTTGCTCAGGCTTTCTCTCTGAAGgagaTGTGCGAGAGTGGGAAGTGTCGTGTGGATGGAGGGCGCCCCCTACAGGACCTGCTGTTGACCGCCATACTGCACGACAGGATGGACACTATCTTCAGCCAGAAGGATGTTTCCTGGCTCCTCCATCCTGCTGTCATGCCTGAACTGTCTCCTGCTGATAGACAGCAGACTATTGCGCTGACTCTTCATTTGATGTACTcttcaacTTCAAGTATGGCCGTCATGTCCACCAGTCTGGTGTCCTGTTTGCTGCTCCACAAGCATCGCAAAGGTGTGCGTGTATCCGTGCTGTGCAGGGACATCTGTTGGCTGTTGGAGGAGGTGTTGTTTAGGAACACAGACGTGGGTTACGGTGGCTCTCTTGTCGGGCTGGTGCATCACGCACTATCTCTGCTCCACCCGTATCTGCTCCTGGCTGCAGCTCCGCCCACAGGAGAACCCATCATCGCACCCCGGCCCGATCCAGACTCTCTGCTCATACTGAGCCAGCACTGCGATTTGCTCACTCACGTCTTCATACACGAGGCTGTAGGAGcGTGTGCTGTCTCAGCCATGCTGAGCGAGGTTGTAGGCTGTGGAGGTGGTGGAGACCTGGAGTTCGATGTTGTTCTGGGCCAGGAAGAGCTGACAGAGAAAAGCCTCCAACTCACACATCTACTGTCACCCGGCTTCATACCGCCTTGTCAAAGCGCTCATGGCTTTGCTCTTGATGTGGTGGACAGCATGGTGCGCTGCGGGGTTCTTGTTATGGAGGAGGTTCAGAAGGATACACCAGTGTGCGACTTCATGAAGAGGCAAGGTGTGCTGTCATGGGCAGTTTCAGATAATCCTGACCAGAGCAGCGATTCAGACTGTGAGGAACCAGACTCCCGCTCTTACAAGTTGAGTCAGCCATCTCAGTGCCCGGAGCTGCTGTTCTTTCTCTGTAGTTTACTGAGTGTCCGACTGAGAGCTCTGTGCTGGGCTCTAGAAAGCCTCCATTACCTCCCCTCACCTATCACAGAGAGAGACTGCTTGAGCCAACTACATGCGCACTTGAAGAACCGAGCTCAGCTGGACAGAGCACACCACGAGAGCTCATCTGTTGACTTGGTGAGAATGGTGATCCTTACCTTCATTGATCTTGGGGTGTTGATTGAGGACGGCCAGAGAGAAGATGCGTATCTAGATGTCAGTCCTCTCTTCTCTCAGTGTGCTCACAAAGAGAAACTCTTGCGGTTTTTCAAACAGTTCATGTATAACTGAAAGAGAAAAGTAAGAGATTCAAAGAGAAGTCAGTCTCGGCCGGGAATTATAACAGTAAGCACTTCTGAAATTCTTGTTCTGTTCTTCAGAGTTGTGTAAATCATTAATTATgaatgcttttttgtgtttatacttCTATTTTGCTTAGCGTACTTGCTTTTTATGTGATGCTGAGGTTGCTTTTTTGTTAAGTTTTGTTGTTGAGAGCCCAGAATTGGTTTAGTTAATGGATAGATAATGTTCTCCGTTTATAAAGAGCAGATAAATAAAGAGTGTGCTGTTTGTTACTGTTCTTTTAACTGTAATGAATATGTAACGGGCTTGGTTCAGTATTTAAGTTTCTGATAATTGACCCAGTTGCAGTCTTTCTGTCACGGTTTGATTTATAGTTTAGCCACACAGCGCTGCATATAACTGTTCATATGTATGGTAACATTCTGCATTACATAAACTTTAAGATGA

Function

symbol description
gpat2 Predicted to enable glycerol-3-phosphate O-acyltransferase activity. Predicted to be involved in several processes, including glycerol-3-phosphate metabolic process; piRNA biosynthetic process; and triglyceride biosynthetic process. Predicted to act upstream of or within cellular lipid metabolic process. Predicted to be active in mitochondrial membrane. Orthologous to human GPAT2 (glycerol-3-phosphate acyltransferase 2, mitochondrial).

NR:

description
glycerol-3-phosphate acyltransferase 2, mitochondrial-like

GO:

id name namespace
GO:0044255 cellular lipid metabolic process biological_process
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
K00629 GPAT1_2; glycerol-3-phosphate O-acyltransferase 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
TU95980 False 1968 lncRNA 0.33 2 18598491 18600484
XM_043247907.1 True 2899 mRNA 0.50 21 18565699 18599606

Neighbor

gene id symbol gene type direction distance location
dusp2 dusp2,LOC107657330,LOC107712482,LOC107550972,LOC107554416,LOC107703175 coding upstream 109160 18453576 ~ 18456539 (+)
LOC122350731 LOC107703135,LOC107753145,LOC107550932,LOC107712468,LOC107657321 coding upstream 118638 18443075 ~ 18447061 (+)
gck gck,LOC107657322,LOC107550933,LOC107712466,LOC107753094,LOC107703174 coding upstream 148679 18408086 ~ 18417020 (+)
orai1a orai1a,orai1,LOC107550979,LOC107687980,LOC107703171,LOC107753099,LOC106585507 coding upstream 211433 18349093 ~ 18354266 (+)
rnf34a rnf34a,rnf34,LOC107687978,LOC107712480,LOC107703169 coding upstream 231986 18326458 ~ 18333713 (+)
zgc:152830 zgc:152830,LOC107550967,LOC107657328,LOC107703177,LOC107554415,LOC107712486 coding downstream 8231 18608715 ~ 18614892 (+)
olfml2a olfml2a,LOC107657324,LOC107550966,LOC107554414,LOC107703179 coding downstream 33812 18634296 ~ 18651554 (+)
LOC122350979 LOC107728433,LOC107676613 coding downstream 63462 18663946 ~ 18672229 (+)
arpc5la arpc5la,LOC107571143,LOC107728439,LOC107550963,LOC107676626,LOC107753090,LOC108411248 coding downstream 74835 18675319 ~ 18678826 (+)
si:ch211-158d24.4 NA coding downstream 125299 18725783 ~ 18729136 (+)
G64878 NA non-coding upstream 114335 18451042 ~ 18451364 (+)
G64862 NA non-coding upstream 174488 18390674 ~ 18391211 (+)
G64858 NA non-coding upstream 198589 18366570 ~ 18367110 (+)
G64855 NA non-coding upstream 216916 18347437 ~ 18348783 (+)
G64841 NA non-coding upstream 278158 18287296 ~ 18287541 (+)
G64889 NA non-coding downstream 16494 18616978 ~ 18618184 (+)
G64910 NA non-coding downstream 73483 18673967 ~ 18674344 (+)
G65073 LOC107564452,LOC107733255,LOC107755688,LOC107702821,LOC107733264,LOC107668424,LOC553487,LOC107564453 non-coding downstream 411449 19011933 ~ 19234600 (+)
G65094 NA non-coding downstream 448798 19049282 ~ 19212125 (+)
G65108 NA non-coding downstream 583206 19183690 ~ 19347044 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other upstream 101152 18460051 ~ 18464547 (+)
sb:cb288 NA other upstream 141894 18418948 ~ 18423805 (+)
lrrc75ba lrrc75ba,LOC107712478,LOC107753104,LOC107703167,LOC107554425,LOC107687975,LOC105891565,LOC108414797 other upstream 280738 18258220 ~ 18284961 (+)
LOC122350298 pla2g1b,LOC107703141,LOC107753147,LOC107554411,LOC107554412,LOC107550943 other upstream 485130 18071485 ~ 18080569 (+)
LOC122350299 LOC107550944,LOC107687988,LOC107753148,LOC107703140 other upstream 494771 18068716 ~ 18070928 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other downstream 94970 18695454 ~ 18722246 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other downstream 494463 19094947 ~ 19096071 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other downstream 519460 19119944 ~ 19152305 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other downstream 599504 19199988 ~ 19201687 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other downstream 671608 19272092 ~ 19273770 (+)

Expression


Co-expression Network