si:ch211-158d24.2 (si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137)


Basic Information

Item Value
gene id si:ch211-158d24.2
gene name si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18695454 ~ 18722246 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU96018
GTTTGACATGTGATATACTGCTATTTCTCACCATCTAAAAtgaacagttatttttaaaagacactCATGATAGCACGAAACCCGCAAACGTTTGCAGATCCAGTGTTCCTTCCTTCCTCAAATGCGTTTCCCTGCCGACGGTTTCAGGCAGATTGGTACAAACGTTTAGCTTGCAGCGCACATCGGGCGGCCGTGGAATAGTGGGAGTGTGCCATCATCTCTCAGATGAGAAAGCATGTGtcactgcattttgtttatcAGCAATTCGTAGCGGTTTCATGCCAAAGctgtGAGAATCTTCCCGACTCAAGACGTCAAGACCTCCACTACAGAAATCCCCAAATCCACAAGTTCTACTGCTTCCACTCCTGCTTCCCGCCTCCTAACTTCCTCTTCCTCCCCTACCACCCACCCAAGCTTACCGACCCTTCAGTCCGGCACGGGAGACTCCTCAGGACACAACAGCACGGCCTCCGCCCTGACAGTAGTGTCCTGGACGCAGTTTAACATCATCATCCTGGCCGTCATCATCGTGGTCGTCGTTCTCCTCATGGGCTTCGTCGGAGGCGTGTACACGTATCGCGAGTACCGCAATCGGAAACTCAACGCCCCGTTTTGGACCATTGAGCTGAAGGAGGACAACATCAGCTTCAGCAGCTACCACGACAGCATCCCACACGCTGACCCCAGCGGACTATTGGAGGAGGAGCCGTGCGTGGTCGCGGCCAATGGGCAGTTAGCGCTCGCCACGGCCGCCAACATGTACAAAGCGTGAAGTCTTTGATTGTATCTTTTCCTAAAaggatagttcagccaaaaaaaaaaggcattttctcactctcatgtcattccaaacctgacAGCGGGACATAAAAGCAGATATTTTGAAGCACCGCAAGAGTAAAACAATGATGGGCCGATTTTAATAACGCAATTTCAGTTTTGCGCTGGAATGAAACCGAAGGATTGCgattcaaccaaaaatgaaaatgctgtcattaattactcactctcaagttGTTCCCAACCTATAAGACCTTTACTCACCTTCTGatcattttgatgaaatctgagagctttctgaccctgcatagacagcagtGCGACTGACGCGGTAAGGCCCCTaaaggtagtaaagacattgctaaaatagtccatgtgacatcagtagttTAATCTTAACTACGAGAATGCTttttatatgcaaagaaaactaaaataatcgCTCTTTGTTCATTGTCTGTAAATACTGGTTTGAATAAGgctgggcaaaaaaaaaaatggttcatCCTCTCTGTCGAAATCTCCAAACATGTCTAAGATTGATTTATGTCCAGCGTGCTTCTACAAGAGCTCCACGTAGCAGCTTGGTGGCATGCAGTGAAGAAATCGATgaataaagtgtttatttttgttctctttgcacgcaaaaattattcttgtagcttcagaAATTCCAGGTTGAACTGccgatgtcacatggactgttttaattatgtctttactacctttctggacCTAGAATGTGGTAGTTGATTGCCGTCTATGCAGGACCAGAAAGCTCTCCGGTTTCACTGAGATTGTCTTTTTGCGTTCTGAACAGGTTTGGgtcgacatgagggtgaatatctaatgacagaattttcattcatttttcactGTAAAGAACCCAATTTTCGTTTTCTGGTGAACTATCCTGCTAATTTGGTCGATTATTGAAAGAATGCGATCCTGGGAGccaaatatttgtttgattCTACACACTATTTAGCTCCCCATTGCTTCCCGTGTGATATCCTCATGCAAAGAGTTTTCACGTTCAACGTTGCAGAGAGGATTTAAGGAAATACAAGAAAAGCCATTAACATACTCCTTGgacataaaaatgataaaactgcaAATGCATTGCCTCTTATACGAGCCTCTGTGTTAGTTTGGGTTTAAGGATGCTAACCTATATTTAATAGGTACACGAAAGTGGATTCCACTATTTTAGAGGCAACTAAGAGACCTTCGGACTCCAATGCCAAGATAATTTCACATAAAACTGCTGTTTGTATAGAAAACTCACAAGGTTTCAGACTGCCCCATTGCACCGCCTGGGAAATTCACTTTGGCATTGCAATTTTTCAATGGAAATCCGGGGAAGATTAATCAGTTTGCAAGGCTTTTGTAAAGGAAACAAAGACTGCCAGTTTCAAGtcccgcgtgtgtgtgtgtctttgacAGATACTATTTCATACACTTCAGATTTCTTTGGAATGCGGTCTCGCTTTGATTTCCTCTTTATATGATTCCTGTCACGGACTGGTACCAAACTGAACATGCAACATAACAGTCATACCTGTACCACTAGCACCCGTTTCAGCCTTATTGTATTTATGCGCGTGTGGGtggatgtgtatgtgtgtgcatgggcgagcgagagagagagctagaTGGTGGTGTGTGTGGGAACAGTTTCAGATCTAACTGTGTAGAGCTGGATTCTACGCAGGAATGTACAAAAAGACTGGATTGATTCTGCTGCATAGTTTCACGAAAACTGATCAAACGTTCGACACAATATTGTAGACACGAAAGCCATGAAAGCGTAAAAATAACCCAGGAGGAGCGTGTTCAGAGGACTTTGTGAAGTGGAAAGACATTTGTTTTCGGGAACCTATAAGGTACAGCGGTGGacacagtgtgtttttttttcctccatttatCTGCAAGGACCCTTTTAAATGTGATTCAGGATCATTTTGATGATTTGGACAAACGACCGGTGTTTGAATTATTGTgcgtgttttttgttttttttttctattcggATTTGTCTTGTTAATtcctatttatttatcatttgtgtttgtctctgtggtcttattttattgatgtttttcaATCTTCATGCTGCATTGTACAGTGTACCATACCGAACGCAAACTCTGTAGACCGAGTTGTGAGCACAACCTCAAAGATGTGTTGGAAGTCTTCTTTTCtcctctttattttctttctgatttatttagtcAGGTTACATGTTAATAACTCACAGTATACAACGGGATGTCGGtggaaaatactgtattttctcATTCCTGAGTGATcaaatgactgaaattaaagGATTATTGAATCAAA
>XM_043247560.1
ATCAAACACCTTGCAGTCGGTTCAGAGCCATTGAGAAAAAGGGGGTCTCTCTCGGATATGGTGGAGTAGGCTACATCGGGGCGGCTTGGAAACCACCTGGTTTGGAATAACCCGATGGAAATTGGAGGACGGGGGCCTTGCGAAGTCCGTCTCGAGGAGGTTTTCATGGAGCGTTGAGGTTATTATTATGTGGTGGCTTGCCTTAATGATGTTTACATCTCCGGCTTTCCCATTCATCGTGTTTGTGTGCATGGGGTTATCCGAGGCGGTTCATTCCTACGATGCGCTGCCTTTAGTAATAAGGAAATCTCGTTCAGTCGCCGAAGAGCATCCGAACACGAGCGCGAGCGGGGTTCCGGGGCACCGGCTCGGTATTGTCGCATTAACACCAGCGCCCACGATCGCGTCCGCCAGAAAACCGATAAATGTCGCCGCACCAGCAGCCACCATTAAACCACCACCGACAACGGAGCCCACCACCCCATCTCTGTCTAATCCGAGCTACATGGCCGCGTTTGCTCGGAGGAAGCTCAGCTCCATTGAAACACGGATGAAAGAATCGCAGATGTCTGATAATAAAGCGGACAGATCGGGCGTCGTGCCCGACTTCAGCACAACCTCGGACAAATCCCAAGAGCTGGTGTGTAACTGCAGCGGCGAGGGAGTGTCGGACCCTGACGAGTGTGACCGTGAGACGGGGCAGTGCGACTGCATGCCGGGGTACACCGGGCTGCAGTGTGAAGAGTGTGAGGAAGATCACTTCACCAACGGCACCATCGGCTGCCTGCCCTGCGCGTGTGACTCCTTCGGTGCCGACGGCTCCAGCTGTGACAGCTCAGGGCTGTGTAAGTGTAAGACAGGTGTATACGGGCCCAAGTGTGACGACTGCCACCCTGGATTCTTCCACTTCAGCAGCACAGGATGCCAACCGTGCCAATGCAACAACCACTCGACCTACTGCCACCCTCAGTCAGGTATTTGTTTGGACTGTCAGGACAACGCTCAGGGCCACAACTGTGAGGAGTGTCTGCCCAACTTCTACCGGCGTCACGGTGAGGGGTCCGCGGACGCCTGTCTGCCTTGCCCCTGCTCCTCCGagacctccagcggcagctgccACCTCGATTCCAGTGGACGACCTGTGTGTGACCAATGCAAGTCTGGCTTCTCCGGTCCGGCGTGCAACGCGTGCCCGGACGGTTTATTTAAATCAGCCGGAGCTTGTGTGCCCTGCGACTGTAACGGGAACGCAGACCCTCGCTCCGTGCCTCAGATCTGCCACCCTGAGACTGGCCACTGCCACCGCTGCATCAACCACACAGCGGGAGCACACTGTGAGACCTGCGCTCGGGGACACGCCGGGGACGCCCGCTACCACAACTGCACCCTGAGAGctgtGAGAATCTTCCCGACTCAAGACGTCAAGACCTCCACTACAGAAATCCCCAAATCCACAAGTTCTACTGCTTCCACTCCTGCTTCCCGCCTCCTAACTTCCTCTTCCTCCCCTACCACCCACCCAAGCTTACCGACCCTTCAGTCCGGCACGGGAGACTCCTCAGGACACAACAGCACGGCCTCCGCCCTGACAGTAGTGTCCTGGACGCAGTTTAACATCATCATCCTGGCCGTCATCATCGTGGTCGTCGTTCTCCTCATGGGCTTCGTCGGAGGCGTGTACACGTATCGCGAGTACCGCAATCGGAAACTCAACGCCCCGTTTTGGACCATTGAGCTGAAGGAGGACAACATCAGCTTCAGCAGCTACCACGACAGCATCCCACACGCTGACCCCAGCGGACTATTGGAGGAGGAGCCGTGCGTGGTCGCGGCCAATGGGCAGTTAGCGCTCGCCACGGCCGCCAACATGTACAAAGCGTGAAGTCTTTGATTGTATCTTTTCCTAAAaggatagttcagccaaaaaaaaaaggcattttctcactctcatgtcattccaaacctgacAGCGGGACATAAAAGCAGATATTTTGAAGCACCGCAAGAGTAAAACAATGATGGGCCGATTTTAATAACGCAATTTCAGTTTTGCGCTGGAATGAAACCGAAGGATTGCgattcaaccaaaaatgaaaatgctgtcattaattactcactctcaagttGTTCCCAACCTATAAGACCTTTACTCACCTTCTGatcattttgatgaaatctgagagctttctgaccctgcatagacagcagtGCGACTGACGCGGTAAGGCCCCTaaaggtagtaaagacattgctaaaatagtccatgtgacatcagtagttTAATCTTAACTACGAGAATGCTttttatatgcaaagaaaactaaaataatcgCTCTTTGTTCATTGTCTGTAAATACTGGTTTGAATAAGgctgggcaaaaaaaaaaatggttcatCCTCTCTGTCGAAATCTCCAAACATGTCTAAGATTGATTTATGTCCAGCGTGCTTCTACAAGAGCTCCACGTAGCAGCTTGGTGGCATGCAGTGAAGAAATCGATgaataaagtgtttatttttgttctctttgcacgcaaaaattattcttgtagcttcagaAATTCCAGGTTGAACTGccgatgtcacatggactgttttaattatgtctttactacctttctggacCTAGAATGTGGTAGTTGATTGCCGTCTATGCAGGACCAGAAAGCTCTCCGGTTTCACTGAGATTGTCTTTTTGCGTTCTGAACAGGTTTGGgtcgacatgagggtgaatatctaatgacagaattttcattcatttttcactGTAAAGAACCCAATTTTCGTTTTCTGGTGAACTATCCTGCTAATTTGGTCGATTATTGAAAGAATGCGATCCTGGGAGccaaatatttgtttgattCTACACACTATTTAGCTCCCCATTGCTTCCCGTGTGATATCCTCATGCAAAGAGTTTTCACGTTCAACGTTGCAGAGAGGATTTAAGGAAATACAAGAAAAGCCATTAACATACTCCTTGgacataaaaatgataaaactgcaAATGCATTGCCTCTTATACGAGCCTCTGTGTTAGTTTGGGTTTAAGGATGCTAACCTATATTTAATAGGTACACGAAAGTGGATTCCACTATTTTAGAGGCAACTAAGAGACCTTCGGACTCCAATGCCAAGATAATTTCACATAAAACTGCTGTTTGTATAGAAAACTCACAAGGTTTCAGACTGCCCCATTGCACCGCCTGGGAAATTCACTTTGGCATTGCAATTTTTCAATGGAAATCCGGGGAAGATTAATCAGTTTGCAAGGCTTTTGTAAAGGAAACAAAGACTGCCAGTTTCAAGtcccgcgtgtgtgtgtgtctttgacAGATACTATTTCATACACTTCAGATTTCTTTGGAATGCGGTCTCGCTTTGATTTCCTCTTTATATGATTCCTGTCACGGACTGGTACCAAACTGAACATGCAACATAACAGTCATACCTGTACCACTAGCACCCGTTTCAGCCTTATTGTATTTATGCGCGTGTGGGtggatgtgtatgtgtgtgcatgggcgagcgagagagagagctagaTGGTGGTGTGTGTGGGAACAGTTTCAGATCTAACTGTGTAGAGCTGGATTCTACGCAGGAATGTACAAAAAGACTGGATTGATTCTGCTGCATAGTTTCACGAAAACTGATCAAACGTTCGACACAATATTGTAGACACGAAAGCCATGAAAGCGTAAAAATAACCCAGGAGGAGCGTGTTCAGAGGACTTTGTGAAGTGGAAAGACATTTGTTTTCGGGAACCTATAAGGTACAGCGGTGGacacagtgtgtttttttttcctccatttatCTGCAAGGACCCTTTTAAATGTGATTCAGGATCATTTTGATGATTTGGACAAACGACCGGTGTTTGAATTATTGTgcgtgttttttgttttttttttctattcggATTTGTCTTGTTAATtcctatttatttatcatttgtgtttgtctctgtggtcttattttattgatgtttttcaATCTTCATGCTGCATTGTACAGTGTACCATACCGAACGCAAACTCTGTAGACCGAGTTGTGAGCACAACCTCAAAGATGTGTTGGAAGTCTTCTTTTCtcctctttattttctttctgatttatttagtcAGGTTACATGTTAATAACTCACAGTATACAACGGGATGTCGGtggaaaatactgtattttctcATTCCTGAGTGATcaaatgactgaaattaaagGATTATTGAATCAAA

Function

symbol description
si:ch211-158d24.2 Predicted to be involved in several processes, including animal organ morphogenesis; cell migration; and substrate adhesion-dependent cell spreading. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basement membrane.

NR:

description
PREDICTED: multiple epidermal growth factor-like domains protein 9

GO: NA

KEGG:

id description
K24334 MEGF9; multiple epidermal growth factor-like domains protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
TU96018 False 3129 lncRNA 0.42 2 18717467 18722246
XM_043247560.1 True 4236 mRNA 0.47 6 18695454 18722246

Neighbor

gene id symbol gene type direction distance location
arpc5la arpc5la,LOC107571143,LOC107728439,LOC107550963,LOC107676626,LOC107753090,LOC108411248 coding upstream 16628 18675319 ~ 18678826 (+)
LOC122350979 LOC107728433,LOC107676613 coding upstream 23225 18663946 ~ 18672229 (+)
olfml2a olfml2a,LOC107657324,LOC107550966,LOC107554414,LOC107703179 coding upstream 43900 18634296 ~ 18651554 (+)
zgc:152830 zgc:152830,LOC107550967,LOC107657328,LOC107703177,LOC107554415,LOC107712486 coding upstream 80562 18608715 ~ 18614892 (+)
dusp2 dusp2,LOC107657330,LOC107712482,LOC107550972,LOC107554416,LOC107703175 coding upstream 238915 18453576 ~ 18456539 (+)
si:ch211-158d24.4 NA coding downstream 3537 18725783 ~ 18729136 (+)
si:dkeyp-14d3.1 si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC107753136 coding downstream 39401 18761647 ~ 18941677 (+)
glt1d1 glt1d1,LOC107676618,LOC107659266 coding downstream 274223 18996469 ~ 19023292 (+)
LOC122351071 slc7a4 coding downstream 359351 19081597 ~ 19090260 (+)
LOC122350065 pold2,LOC107747204 coding downstream 378060 19100306 ~ 19103847 (+)
G64910 NA non-coding upstream 21110 18673967 ~ 18674344 (+)
G64889 NA non-coding upstream 77270 18616978 ~ 18618184 (+)
G64878 NA non-coding upstream 244090 18451042 ~ 18451364 (+)
G64862 NA non-coding upstream 304243 18390674 ~ 18391211 (+)
G64858 NA non-coding upstream 328344 18366570 ~ 18367110 (+)
G65073 LOC107564452,LOC107733255,LOC107755688,LOC107702821,LOC107733264,LOC107668424,LOC553487,LOC107564453 non-coding downstream 289687 19011933 ~ 19234600 (+)
G65094 NA non-coding downstream 327036 19049282 ~ 19212125 (+)
G65108 NA non-coding downstream 461444 19183690 ~ 19347044 (+)
G65074 NA non-coding downstream 502323 19224569 ~ 19233384 (+)
G65119 NA non-coding downstream 683410 19405656 ~ 19482043 (+)
gpat2 gpat2,LOC107712449,LOC107550920,LOC107657318 other upstream 94970 18565699 ~ 18600484 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other upstream 230907 18460051 ~ 18464547 (+)
sb:cb288 NA other upstream 271649 18418948 ~ 18423805 (+)
lrrc75ba lrrc75ba,LOC107712478,LOC107753104,LOC107703167,LOC107554425,LOC107687975,LOC105891565,LOC108414797 other upstream 410493 18258220 ~ 18284961 (+)
LOC122350298 pla2g1b,LOC107703141,LOC107753147,LOC107554411,LOC107554412,LOC107550943 other upstream 614885 18071485 ~ 18080569 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other downstream 372701 19094947 ~ 19096071 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other downstream 397698 19119944 ~ 19152305 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other downstream 477742 19199988 ~ 19201687 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other downstream 549846 19272092 ~ 19273770 (+)
rfk rfk,LOC107740987,LOC107723557 other downstream 1307788 20030034 ~ 20033607 (+)

Expression


Co-expression Network