G64942 (lzts1,LOC107712471,LOC107687967,LOC107550927,LOC107554439,LOC107753115,LOC107703152)


Basic Information

Item Value
gene id G64942
gene name lzts1,LOC107712471,LOC107687967,LOC107550927,LOC107554439,LOC107753115,LOC107703152
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18029535 ~ 18032726 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU96043
aaatagggAATATATAACATACAGGCATTCAAATGCATCTAGAGGCAGCCTTACACCCCACGACCACCCTGCGCCATCAATAATATGATTATCAGTTTGTTTCTATCAAATCGAAACTCTACGGATGATAACTCACAAGGCAGCTTTTTGGGAGCCTTTGTATGATGAAACGTTGGGTAACAAATTTGCGcgatggaagaaaaaaaaaggaaacagtgTCAGTGCTGCCCACCTCAGTCTTTCTGTTTGCCATTTTAAGCAGCATTGCTAGGAAAGTTCTCCCGTGAATGGTTAGGTACAGTATTGTGTTACATCTAAGCGCTGAAGGAGAACACACTACTACCGTTCTCGCCGTCTTGTTTCATCACCTGCTCTTCTGCAGTAGAACCTCTGTATAACAGACCGGCGGACTGTGAGGCTTCCAGCTAGATACGTCAGCGTTCTGCAATGATAACTAATGAAAATTCAGTATTCGTTGTATTCactaaaaaccaaacaaaacgtAAAAGCAGTCCACGTGAGCTATGTTCAAGATCTTCACAAGTCATGCAGTTGTCTTACTTAAAGAATAGACCAAAATTGAAGCCTTTGTTCACTGATAATCTCCCCATACACTGCAGCAAATGCTTCTCTTACTTAGAttttttattgtcttgtttCCGGCATTGAGTTTTTCTatagaacaagcaaaataatcttatttcaaacaagaaaacaagattattttgcttaccccattggcagattattttacTTGTTTCAAGCGAAAACTCCCTTCATTTTgacttgctttatttttgaaaacaagacaatagtttttactttatttttatatactatatgaTATTTTGGCCAGAAACAAGACGGTGTACAAATCGCTCGAATTtcattcatgctttttttttccaattagaAGAAAATAACGTTCTTAGATAAGTTGCGCAATGTTTGTCGTCGTGAAGCTCAACGGCGTTTCTCTCGTGTCATGTGAACAATCGagaggaggggaaaaaacaacaactgaggTTTGAGAGTTTTGACACAAAGAATAAAAGAGTGATCAACTTTTCCACTTTTCTTGAAtggcttattttttaaaaaagaaaacaaagttaTGCTTTGCTTTGAAAGATCGAATAAATCATAAAggtttcatttcaaaattatatattcctGTGGAACCaatgagtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgagtgtttaatTTAACCCTTGTTGTCCCACACACATGTCCTTCGAGTGAAAGAGACTTGACTTtaaaaccccccccaaaaacttaatgcctaagtacagtacttttaaaaatatgaaaaggaaTTACTTTAGATTAACAATGAAATATGTATCTGGACATTTGTGAACTGTGCGTTTGCATTCATCATGGCATTATCTCACTGTATGAGCTATTATATTCCTGTACACAGATTGTTCAACCCGATCTCACAGCAATTCATCCATATTTTACGAAgtggctaatttgtacaaatttgtatGACCTCACTCATGCAAATGAATCaaatttttgctaaatcgtaCATATTACATGagtttgtatgaatttgtacgaccGACCGACACCTAATCCCGCCCCTAAACCGCTCCTGGGGTTTAGACAAATAGAACAAAATTCGTATGAATTAGCCAACTCTTTAAATTGCATACGAATTGCTCATGAGACTGTGGATTGTTTCTTTGAGCCCGTCTGCCAGAACACAGGTGATAAAGATTCTTGTCATataaaaaggaagagagagtgCAAAACTAGCaattacagcaaataaaacattcacgTCACCCTGTTTTGAGACTCTACAACTGCGTGAGGTTTAGGCAAGAAGCACTGGATTGTTCGGATTATAGGGGGTAAGCATTTGGTTGGATGTGCAGAGATTAAAGGTGCTGTAAGCAATGTTAGCCATTCTGAAACTTCACTTGCACACTTTCCGTAACTATTGTCATCGGAGATTAGCAGGGAAACAGTAGCACACCTCATCGTTGCCAAGCTAAATGCTACCAAAATAGTACCCTTTCACGAACCAACAACAGGCAACTGCTTATGAAACTTAATATGGTTCTTAAAtggaattatttaaattattcaagTCTTCAACTGCCACGCTCCCAGACACCTGCTTCCTATTCACTGGCTGCACTATGAATGCACAGAATGACTGACAGGCAGAAAATGCTTAAATGGCTAAACAAAGAATCTGACCGTGGTCAATTACTTGGAGTTTACAGAATTTACGGCTGCCACAGAGACAGATGTGATGTTACTGACGGAACATTAATTTAGTGTGATATCCCACGTAAGAGTGTAATTCCAATAAACAAATTTGCTTACGGCACCTTTAATAGGGACAAAAATGCACATGGATGACATCCTAAGATTTTAAGTTAAGTGGTAAATCTAAAAGGAGAAAGCTTTTGGTGATATGTACAAGTGATGCTATAATGCCAGCATCTTCTGACATCTTAAAATCTTATGTGACATCATGTTTCTTTCCTTTCAATTTTTGCTTTGTGTACATTCACCCTCTTAAGACCATTCGGTTAATCGTGAAAACATTCACCCTCCGACCTCATATCTCTGTGGCTACAATTTTTTCAAAGTTCAGGTCAGAGCTATGGCTGTCCATGTCCATCTCTGTCCGACTGTCCATCTCAGCCGTTAGCTCCCTCAGAATCTTTTCCAGGTCCTTGTTCTTTCTGTACATCTGTAGATAATTGTACTGCAACTGCTTTTGGTATCTAATtactttgtctttctctttattccACGTTTGTCTCTCCTGTTGGAAGCTATTCATCATCTTGTGTTTCTTTTGCTTCTCTTCCTTCAGTTCCCCTCTCAGTCTCTCTACCTCCTTCTGTAGAGCATTCAAGTCTGCTGTCCCTCCATTATGATTCAGTGTTTTACTGGCACTTGTTCCATCCTGGGCTTTCGATTTGGCTTGACCAGTCCCAAAGGCCTCCATCCGGGCTTGGCTTATCTGCAGTTGCAGCTGTTGCTCCTCAACTTTGGCTCTCATGGTCATTAGCTGCTGTTGCTCCTCTTTGGCCATTGCTAAGTCCTGCTTCATGCCCTTAATGTCCGTTTCCAGCATGTTCACTTTTTCCCTGAGGAGGTCAGC

Function

symbol description
lzts1 Predicted to enable microtubule binding activity. Predicted to be involved in regulation of dendrite morphogenesis and regulation of synaptic plasticity. Predicted to act upstream of or within mitotic cell cycle phase transition. Predicted to be active in dendritic spine. Is expressed in female organism. Human ortholog(s) of this gene implicated in esophageal cancer and squamous cell carcinoma. Orthologous to human LZTS1 (leucine zipper tumor suppressor 1).

NR:

description
PREDICTED: leucine zipper putative tumor suppressor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96043 True 3170 lncRNA 0.39 2 18029535 18032726

Neighbor

gene id symbol gene type direction distance location
LOC122350049 LOC107748126,LOC107553823,LOC107687983,LOC107549670,LOC107697074,LOC107697075 coding downstream 323044 17701512 ~ 17706491 (-)
crybb2 crybb2,LOC107565327,LOC107753119,LOC107684510,LOC107553840,LOC107687964,LOC107748132 coding downstream 330120 17697175 ~ 17699415 (-)
slc23a2 slc23a2,LOC107753122,LOC107687958,LOC107684505 coding downstream 431688 17569420 ~ 17597847 (-)
rassf2a rassf2a,LOC107687959,LOC107553834,LOC107742747 coding downstream 461926 17552520 ~ 17567609 (-)
prnpa LOC107736233 coding downstream 486457 17540826 ~ 17543078 (-)
si:dkey-63d15.12 NA coding upstream 20633 18053359 ~ 18056277 (-)
asgrl1 LOC107580964 coding upstream 42871 18075597 ~ 18079483 (-)
si:ch211-170d8.8 LOC107712454,LOC107687991,LOC107550941,LOC107554434 coding upstream 47219 18079945 ~ 18082617 (-)
LOC122349911 LOC107569538,LOC107747839,LOC107694233,LOC107554410,LOC107703160 coding upstream 98768 18131494 ~ 18143145 (-)
LOC122351022 NA coding upstream 125571 18158297 ~ 18162389 (-)
G64777 NA non-coding downstream 283611 17745685 ~ 17745924 (-)
G64757 NA non-coding downstream 364403 17661349 ~ 17665132 (-)
LOC122350842 NA non-coding downstream 368557 17657809 ~ 17660978 (-)
G64724 NA non-coding downstream 616663 17411009 ~ 17412872 (-)
LOC122350118 NA non-coding downstream 664025 17362169 ~ 17365510 (-)
LOC122350292 hnf1a,LOC107687971,LOC107550982,LOC107712475 non-coding upstream 63369 18096095 ~ 18103013 (-)
G64966 NA non-coding upstream 93459 18126185 ~ 18128804 (-)
G64992 NA non-coding upstream 252759 18285485 ~ 18285734 (-)
G65010 NA non-coding upstream 332713 18365439 ~ 18365779 (-)
G65011 NA non-coding upstream 334700 18367426 ~ 18367640 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other downstream 384024 17601258 ~ 17645511 (-)
LOC122350953 NA other downstream 628307 17320376 ~ 17401228 (-)
zgc:194007 NA other downstream 667685 17359385 ~ 17361850 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other downstream 932740 17046467 ~ 17096795 (-)
LOC122350093 NA other downstream 1619839 16407834 ~ 16409696 (-)
LOC122350290 LOC107569538,LOC107747839,LOC107554410,LOC107703160,LOC107694233 other upstream 74727 18107453 ~ 18112701 (-)
G64967 NA other upstream 122409 18155135 ~ 18157543 (-)
tbc1d10aa tbc1d10aa,LOC107657331,LOC107712481,LOC107550973,LOC107753095,LOC107703173,LOC107554420 other upstream 357937 18390663 ~ 18401938 (-)
G65033 NA other upstream 526941 18559667 ~ 18560334 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other upstream 990987 19023713 ~ 19047969 (-)

Expression


Co-expression Network