LOC122350102 (LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265)


Basic Information

Item Value
gene id LOC122350102
gene name LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19023713 ~ 19047969 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU96415
TGGAGCTGTATTATCAGGCCAGACCCAGCACCTACGGCACATGCACTGTCAGCGGGGAGGAGGGCAAGAGGTGGGATTTGGGTGATGGAAATGCTGGTCAGCCTGAAGCTGAGTACATGCCTGTGACCCCCATGCAGAGGATCGGGAGCGTTCGGCTCCTGCAGGTCAAACAGGGGGCCATGCCAGTGTCAGTGCTCAGACTGAGAGAAGCTGTGGTCATCCAGACCTCCTCAAAACCACTTAAGAAAGCTGATATTGCCTCCTTTTATGTGTATGTGAGGACCTCAGCCAACCTGGATACTTTCTCCCTCAGAGCCATGGTAAAAAAGGGTGTGTCGTTCCGTACAGCTACACCTAGCAACACAGTACTATGGGACATCACCCTAGACACGGGCCCGGATGGGAATGTTGGAGTAATCTGTCAGAGAAAGGCAACTACGACTGTGAAAAGGTTAAGTAAACTCCAAGCAGTTCTTCAGATGGATTTTGAGGTGGAAGATGTCAGCAGTCAATCGGAGATTCAGCTGATCAAGTGGGAGCTGACGCTTCCAGATGAAGTCAAACTGA
>TU96416
CGCAGGGCTGTGGAGTTTCAGGCTGCCGGGGCACTTTCTGCACGGACGAGACCACAACAGGGCGCGCGAAGAGccagggaaaaaaaggaaactgtTTTGCCACCTCCGTCTGGTTGGATTATGGTGGAAAGATTTAAGAAAGATCAAGTAAATTAGTTCCGAACCGCGCCAAGCCGTGTTGTCGAGGCAGCGCTTTTCTCAACGCGCGGTTTGGACTCGCTCGCCGCTTTTTCCGgtagaaatgaataattgagAAGCGCGCGGTTCTTGCGCGGAGGAGCGCGTGCACAGGTGAAGACTCCACAGGTAAAACGTGACGCTGCCGGACCAGATGCGCTGCTCGGAGTCTCCTGCTTAGGGTTCCTGAACGTCAAAAAAACGTTAATGGGACATATCATAGACAACCCCTGTGGCCAAAATGAGCGTCTATTCTCACCTATGGCGGATTTTGCAGATATTCTTGGCAACCATAATCACGGTGGTCGCACAAGAGCTGAACAGTCAGGAAGTCTCTGATGCCACCAAGTCCTCCACCCCTTATCCGTTGTTCCTTCCTGTAACTTACCAGGTATGGGATGCTGACTACTTTCTATTAAAAGAGGCTGGGCAGGACATCAT
>XM_043246319.1
AGCCACGCAACAAGTTTGCTACGCGAGAAAACACGAATAACGCAAGGACACCTGATGTCTCGTGGGCAGCGCGAGCCCCACGCGCCGCGCCGAGCACTTAATCGCCTGACTCCCGCCGCCTGTCTCGTGTCTAATTCACCGTAAATCCCGTCGCTCGCGCCCGGGACCGCTGAGGACCCCAGAGCTCGAGATGGGTGACGGCTGGACGCAGGGCTGTGGAGTTTCAGGCTGCCGGGGCACTTTCTGCACGGACGAGACCACAACAGGGCGCGCGAAGAGccagggaaaaaaaggaaactgtTTTGCCACCTCCGTCTGGTTGGATTATGGTGGAAAGATTTAAGAAAGATCAAGTAAATTAGTTCCGAACCGCGCCAAGCCGTGTTGTCGAGGCAGCGCTTTTCTCAACGCGCGGTTTGGACTCGCTCGCCGCTTTTTCCGgtagaaatgaataattgagAAGCGCGCGGTTCTTGCGCGGAGGAGCGCGTGCACAGGTGAAGACTCCACAGGTAAAACGTGACGCTGCCGGACCAGATGCGCTGCTCGGAGTCTCCTGCTTAGGGTTCCTGAACGTCAAAAAAACGTTAATGGGACATATCATAGACAACCCCTGTGGCCAAAATGAGCGTCTATTCTCACCTATGGCGGATTTTGCAGATATTCTTGGCAACCATAATCACGGTGGTCGCACAAGAGCTGAACAGTCAGGAAGTCTCTGATGCCACCAAGTCCTCCACCCCTTATCCGTTGTTCCTTCCTGTAACTTACCAGGTATGGGATGCTGACTACTTTCTATTAAAAGAGGCTGGGCAGGACATCATGCGAAATTCCAGCATGCAGAGCCACACGCAGCCATTTGTCGTGCTTCAAGCAGGACGTCTCCCATTTATCAATGCCAGCTACGGCCCACTCTCTACCAAACGGGAGATTCCCCTGGACTTAGTGCAGTCGGTGCAGTTATTTCAGCCCTCACCAGTGGTTTTCACCCTCAACTGGAAAGTCCAGTCCTTTGTCCTGACCCGATGGGTCTACTCGTCTTCTCCCAAAGTGCGAGTCCTGTTCTATGTGGCTGGGAGAGACTGGGACAgaggagagaaggagaaaggAACGAAAGATGAGCTTCCTTGTGTGACTGTGTATGCCTTCTGGCAGACCCAAGAGGTTCGGGGCTCCTGTGTCATCAGAAATGAGCATGGGACATGCATGGCAGAGGTTGATCCTCCGGCAGGTTGGTTCAGCCCAGTTGAGGGCAGTTCTAGTCGGGAAAAACAAGGGCCGAGCCAGGGAAACTCTGTGGAGCTGTATTATCAGGCCAGACCCAGCACCTACGGCACATGCACTGTCAGCGGGGAGGAGGGCAAGAGGTGGGATTTGGGTGATGGAAATGCTGGTCAGCCTGAAGCTGAGTACATGCCTGTGACCCCCATGCAGAGGATCGGGAGCGTTCGGCTCCTGCAGGTCAAACAGGGGGCCATGCCAGTGTCAGTGCTCAGACTGAGAGAAGCTGTGGTCATCCAGACCTCCTCAAAACCACTTAAGAAAGCTGATATTGCCTCCTTTTATGTGTATGTGAGGACCTCAGCCAACCTGGATACTTTCTCCCTCAGAGCCATGGTAAAAAAGGGTGTGTCGTTCCGTACAGCTACACCTAGCAACACAGTACTATGGGACATCACCCTAGACACGGGCCCGGATGGGAATGTTGGAGTAATCTGTCAGAGAAAGGCAACTACGACTGTGAAAAGGTTAAGTAAACTCCAAGCAGTTCTTCAGATGGATTTTGAGGTGGAAGATGTCAGCAGTCAATCGGAGATTCAGCTGATCAAGTGGGAGCTGACGCTTCCAGATGAAGTCAAACTGATGGGGGCGTCTGAAGGCACCATGAGGGTCTACACCACTCAGAGGGACTTTGTAGGCCTGGCTCCTCTAGTTATGGACACAGAGCTTTTGAACACTGCAGTGCTGACTGGTAAGAGGGTTACGGTTGGAGTAAGAACCATTGCTGTGGAACAGGATGGTTCTGTAACGGATGTCTCAGAGTTTGCTGACTGCAGCTCCACAGATGAAGATGTTCTTAAGGTGTCCGACAGATGTGACTTTGTGTAcgtgaatggaaaagaaacccaGGGTCGACTGCGGATGCTGGTGAACTTCACTTACAGTTACCTGAGCGCTCAGCTGGAGATGAAGGTCTGGTTTCCTCGTCTGCCGCTGGATATAGAGGTGTCTGATACAGAACTGAGTCAGATCAAGAGCTGGAGGATCCCTATCATGTCCACCAAAAGCAAACCAGGCTGGAGCAGTGAGGAAGAGCGTAAGGGCCGGGGATGTATGCTGCAGTTCCAGCATGCTCTTGTCCGAGTCTTCACACACTTTGTGGCCGAGCAATCAGACCCTCGGGAGCCACAAGCTTTCTTCCTGGGCTCCGATTGGCAGGTGGATGTGACCAGGCTAGTGCGGTATTTCTTGAAGGTGGACGATACTAACATTGCCCGtctgcaggcaggcaggattCTGTCAGGACAAGACGTGGGCACCACGTCTATAAAGGTCCTTTCCCCATTGTCAGACTCCATCCTGGCAGAGAAAACCGTAAAGGTTGTAGATGATCGAGTGACCATCACTGAACTGGGCCTTCAGCTGGTCAGCGGTCTCACACTCAGCCTGCAGCTCAGCACAGGAAGTAACAGAGTCATCAGCGCCACAGCGACCACACAGGAAGTGCTCAGCAATCCTAAACAGGAGGCAGTGTTGAGCTCCTGGCTACAATTTAGTGATGGCTCCCTTACCCCATTGGACATATATGATCCTGCTCACTTCCGCCTTGCTGTGACGTCGCTGGATGAGGGTGTCATCTCTGTGCAGGGCTCACCTATGACTATAGTGGCTGAAGGTGAAGGCCAAGGAACGCTGGTAAGAGCTGAGATGACCATTTGCGAGGTCTGTCAGAAATCCAAGCGTAAAAGCACTTTAGCTGTAGGCACTGGGAGTTTAACGGTAAAGTTCCAGACAAACAGCAAACGTCCTGAAAACAGCAGCATCAACAACGACACAGGAAACAGTACAGGACTATTTGCGGGTGTCACTGGGAAAGACAACAGCAGTGAGCGTGGTGATGAAGGAGAGGAGACAGACTCTGATAAGAAGCTTCAGCAGCCAGAACAGGTTTTAAACAGAAATTCAGAGTCTGAGCGAGAAGAAACTGCCTTGTTGAAGATCACCACCACAGCCAAGTCGACAGCTCAAGACTCAACTGTTGGCAGCATCGCAAATGATTTGGGAATGGGACGGGCTAACGATGCATCAGCTGGAGTCAGTAAACCTGGGAATATTTTAAACAGTGGAAATTTCTTTAGTACAGGAAAAGCTGGAATCGATGGTCGCGCAGGAATTTCCTGGAGTAGCAATGAGGTTCCTGAGGGTTCGATGTTAAGCACTGGGAGAGCTTCTGGGAACTTAATGAACTACAATAACTACCCTCCCCAAGTGGAAATACCCAATCAGGAGCCAAAAAATGACTATggagatgatgatgacgacgacgatGACATTGAGGGACCACTGTCAAACCGTCCGCTTACTGACCTGGAGATTGGGATGTATGCATTACTGGGAGTCTTCTGCTTGGCTATCATAGTATTTATGGTAAATTGTGTATCGTACTTGGTTAAATATAGGCACAAGCAGACGCCTGGTCAAGTCTCTGAGCAGACTGGTCACCGGCACGACTGGGTATGGCTGGGAACAGATGCTGAGCTTGTTAtgaatgtcactggaagcccaTTACAGCAGGACGCTCATAATACATCTGTGATTGACATAGGACCCAATACAGAGCCTTGTGGTACCGTCACCCGTAGGACCTCTTGCCAGGTGTCTTCTGTATCAAATGACTCTAATGTTTCGTGTGTAGGATCCCCTTCCGCAAAACCAGTCCGAAGTGAATCCCTACACTCACCCACTAGTAAGAGGAAAAGGGTCCAGTTTACCACCTTCACATCATTAGATCGGCAAACTCCTCCAAAAATGTTACCACAAGAGAATGGACATGGAATTAACTGGGTGGGAAAAGAGGACAGTTGTATGACACCTGAGGTGCCAACTGCTTAGTCTTTGCAAAAGCTGTGATTGTTGCTTCACATGCAGCCTGATTTATGCACCCATAATGTATATCTCCGTAACAGGGCTGGGCAactcctgcagagtttagctccaacctgtGGTCACCTGAATGCCTTCTTTCTTTGGAAAAGTCATCTGTTGGTCTGTGCTACACAGGATTATGATAAAGATAATCAGTACAGTTTCATGGCTTTCGTAAGGACAGGTGTGGCATTTTCTTTTTGACTTAAATTTGTGAAAGGTCAATTCTGCCTTGATTACTGATCATGATAAAAGGGATAAAACACAATCTtgctatttttgattattattaaaagcacCTCCctccctcaaaaaaaaaaaagagctttgagGTTATTAGCAAAGctctttattttgtcttttccaATGATCTTCATTGGGGGATTTAAAGATTTAAGAGTTTCAATACACTGATATATTCTATTTGACTGTTATTTGACATTGCATCcctacatttttatacaaaagtGCATGTGATTATTGTACAGATTAAAGTTCACTTTGTCTGAAGATATTTTACCACCCTGCATTTGTATGTACAgtcagttgttttattttccattaaaacaccACATAACAAGGCCA

Function

NR:

description
PREDICTED: transmembrane protein 132C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96415 False 567 TUCP 0.51 3 19030987 19039551
TU96416 False 618 lncRNA 0.52 2 19040025 19047763
XM_043246319.1 True 4731 mRNA 0.49 9 19023713 19047969

Neighbor

gene id symbol gene type direction distance location
slc15a4 slc15a4,LOC107659270,LOC107728435,LOC107550965 coding downstream 29030 18948241 ~ 18994683 (-)
golga1 golga1,LOC107728437,LOC107753089,LOC107550959,LOC107703180 coding downstream 330474 18680496 ~ 18693239 (-)
LOC122350119 LOC107734022 coding downstream 391507 18627240 ~ 18632206 (-)
pop5 pop5,LOC107712469 coding downstream 397409 18624133 ~ 18626304 (-)
rnf10 rnf10,LOC107703176 coding downstream 399780 18615062 ~ 18623933 (-)
LOC122350018 LOC107564459,LOC107659264 coding upstream 705 19048674 ~ 19052396 (-)
LOC122350019 LOC107564454 coding upstream 5703 19053672 ~ 19056276 (-)
LOC122350017 LOC107564452 coding upstream 16527 19064496 ~ 19067367 (-)
LOC122350795 LOC107564453,LOC107668424,LOC107755688,LOC107733264,LOC107702821 coding upstream 20825 19068794 ~ 19070815 (-)
LOC122350732 ccdc157 coding upstream 43455 19091424 ~ 19094023 (-)
G65175 NA non-coding downstream 27020 18965288 ~ 18996693 (-)
G65157 NA non-coding downstream 294571 18727777 ~ 18729142 (-)
G65055 NA non-coding downstream 328363 18695050 ~ 18695350 (-)
G65038 LOC107550967,LOC107712486,LOC107657328,LOC107753142,LOC107703177,LOC107554415 non-coding downstream 408816 18612603 ~ 18614897 (-)
G65012 dusp2,LOC107657330,LOC107550972,LOC107712482,LOC107753144,LOC107554416,LOC107703175,LOC108265928 non-coding downstream 564404 18453581 ~ 18459309 (-)
G65194 slc7a4 non-coding upstream 33679 19081648 ~ 19250684 (-)
G65180 NA non-coding upstream 38603 19086572 ~ 19257030 (-)
G65199 NA non-coding upstream 51564 19099533 ~ 19267105 (-)
G65201 NA non-coding upstream 52960 19100929 ~ 19268190 (-)
G65217 sf3a1,LOC106585510 non-coding upstream 214768 19262737 ~ 19263305 (-)
G65033 NA other downstream 463379 18559667 ~ 18560334 (-)
tbc1d10aa tbc1d10aa,LOC107657331,LOC107712481,LOC107550973,LOC107753095,LOC107703173,LOC107554420 other downstream 621775 18390663 ~ 18401938 (-)
G64967 NA other downstream 866170 18155135 ~ 18157543 (-)
LOC122350290 LOC107569538,LOC107747839,LOC107554410,LOC107703160,LOC107694233 other downstream 911012 18107453 ~ 18112701 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other downstream 1378202 17601258 ~ 17645511 (-)
LOC122351133 NA other upstream 154308 19202277 ~ 19202377 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other upstream 380769 19428738 ~ 19433291 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other upstream 1070038 20118007 ~ 20134345 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 1367096 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 1670971 20718940 ~ 20723155 (-)

Expression


Co-expression Network