rfk (rfk,LOC107740987,LOC107723557)


Basic Information

Item Value
gene id rfk
gene name rfk,LOC107740987,LOC107723557
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20030034 ~ 20033607 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU96674
tgaTGATGAGTGCGACACGCAGTTGACCAACCGGTCACGTTACGGTACGGATCCACTTACCGACCGGTAACATCACTTCATCTCGTCTCAACATTCAGACGAGCTAGGCTCCTCGCTATAAAGCTGCCGTTTCCGGGCTAAAGGAGCGTATTCGGTGATCCGCGGGTTCGGGCGGGGAAGCAAAGACCTGGGCATCCCGACAGCCAACTTCCCAGAGTCGGTGGTGGACAATCTCCCTGCGGACATCAGCACGGGGATCTATTACGGATGGGCACGCGTCAATAACGGAGACATTCACAAGATGGTGATGAGCATCGGCTGGAACCCTTACTACAAAAACACCAAGAAGTCCATGGAAACGCACGTGATCCAAGCTTTTAAGGAAGATTTCTACGGCAAGGTGTTGAGCGTGGCCCTGGTGGGCTACATTCGCCCCGAGAGAGGATTCAAATCGCTCGACGAGCTGATAGCAGCCATTCACAGCGACATCGAGGAGGCGGAGGCCAAGCTGGACCTGCCCGAGCACCTGAAACTGAAGGAGCATCACTTCTTCAAGACGTCCATGTCCACGACAGCCAGTCAGATCTTGAACGGTCATCGACTGTAATGCCTATTTAAAGCCCGTTTGTTAaatatgcagtttattttttcatgttttagttTTCTGTCCCCCGTGCGGTGCTTTGCTCGAGTGCAGGCACGGCATGCGTTAGTTTTCATATGGTATCATCACGTAGACCCGttgtttctatatttattaaaaggagAGGTGGATTCGGGTCCTTCCCGGAGTTCAACGACTGCTACGGATATACGATGAGAAAGTAAGAGAGCGTCGAAATCTCTTCTTTCTGGTAAAATTCACCTTTAGATGTTGAGTTCTTGCTCCACCTTCACTTCGATTTCGTTTTTGTTTGATGGAGACTCTCTTTACATGAATTAAACCGTTGGTAAAATTGGCCTTCCTCCTCTTTTGAGATAAAGTGAGTGCTTTTTATGGTTCTCAGAGAACCGTGCCCAGAAGTTAAGGCCAAGGTTGAGATAAAGAGAGCAAAAGCTCAGGTTGTTTATAGTATGAGTGCAAAACTGTGTCGATGGAGAAAGAAGCAGTGACTGAAGACATCATTTAAACGTGTACAGAAGCTATATATTACTGAACCCTTTCTTCTGATCTGATACGTTTAGTAGTGCTTTTACATATGAAAAGGAGCTCGGTTAGATCGAGTGGGTTTACAAATGATCTGCTTTACCTTATTTCTTCATGTCGGGTTCTTGTCCAGCTGACGCTTGAAAACCGTGCCGCCGGTTTAGCGTTGAACGGCGCGGTCACGTTATTAGCCATAAAGCTCATTCGTTTTCAGCGTAGGGCTGCATGTTTACACAGAAACCGGGCTCACACCGAATCTTAGCCGTTTTCTGTTGGTCAAAGCAGCGAATCTGTGCGCGCGAAATGGTTGGACTATGGTCGCGCGAAATTTACGATCACGTGGAGTGGACGGAAAAAAACGTGACCGCACCGGAACCAATGTGAAAAGGTGACTCTTTAAAACCCGTTTCTCAACGCTGTAATCTTCACAATCTATGTTCATCAGAATGGGCCTTTAATTGAAACGCTGCTTTTGTATATGTTTGGTAAGATGTGcatatgctttttatttcttttcttcttttttattttgtaggtCAGGGCAGTGCCTTACATCAGACATAAACAGTACACAACCTAGCATTCCTTCATTGTTCACACCTGCTTGTAATCATTAAACGAAAACGCCTTGTGTTTTACCGTTGtctacttttttgtgtgtgtgaaaactcTGCTTTCAAATAATTGAGAAttggaaataaattatattaatccCCAT
>XM_043247562.1
gttggtggaaaaaaaaagctgaatgaTGATGAGTGCGACACGCAGTTGACCAACCGGTCACGTTACGGTACGGATCCACTTACCGACCGGTAACATCACTTCATCTCGTCTCAACATTCAGACGAGCTAGGCTCCTCGCTATAAAGCTGCCGTTTCCGGGCTAAAGGAGCGTATTCGGTAAGAGAGAATAGTCTAGAAACAGCAGGTCACTGTCCGCTCCGCCGCTGGATCTCTGGGTCGCCGTGAACACGGTAAACGGGTCGACATGAGGAGTTTACCGTATTTCTGCCGGGGACAGGTGATCCGCGGGTTCGGGCGGGGAAGCAAAGACCTGGGCATCCCGACAGCCAACTTCCCAGAGTCGGTGGTGGACAATCTCCCTGCGGACATCAGCACGGGGATCTATTACGGATGGGCACGCGTCAATAACGGAGACATTCACAAGATGGTGATGAGCATCGGCTGGAACCCTTACTACAAAAACACCAAGAAGTCCATGGAAACGCACGTGATCCAAGCTTTTAAGGAAGATTTCTACGGCAAGGTGTTGAGCGTGGCCCTGGTGGGCTACATTCGCCCCGAGAGAGGATTCAAATCGCTCGACGAGCTGATAGCAGCCATTCACAGCGACATCGAGGAGGCGGAGGCCAAGCTGGACCTGCCCGAGCACCTGAAACTGAAGGAGCATCACTTCTTCAAGACGTCCATGTCCACGACAGCCAGTCAGATCTTGAACGGTCATCGACTGTAATGCCTATTTAAAGCCCGTTTGTTAaatatgcagtttattttttcatgttttagttTTCTGTCCCCCGTGCGGTGCTTTGCTCGAGTGCAGGCACGGCATGCGTTAGTTTTCATATGGTATCATCACGTAGACCCGttgtttctatatttattaaaaggagAGGTGGATTCGGGTCCTTCCCGGAGTTCAACGACTGCTACGGATATACGATGAGAAAGTAAGAGAGCGTCGAAATCTCTTCTTTCTGGTAAAATTCACCTTTAGATGTTGAGTTCTTGCTCCACCTTCACTTCGATTTCGTTTTTGTTTGATGGAGACTCTCTTTACATGAATTAAACCGTTGGTAAAATTGGCCTTCCTCCTCTTTTGAGATAAAGTGAGTGCTTTTTATGGTTCTCAGAGAACCGTGCCCAGAAGTTAAGGCCAAGGTTGAGATAAAGAGAGCAAAAGCTCAGGTTGTTTATAGTATGAGTGCAAAACTGTGTCGATGGAGAAAGAAGCAGTGACTGAAGACATCATTTAAACGTGTACAGAAGCTATATATTACTGAACCCTTTCTTCTGATCTGATACGTTTAGTAGTGCTTTTACATATGAAAAGGAGCTCGGTTAGATCGAGTGGGTTTACAAATGATCTGCTTTACCTTATTTCTTCATGTCGGGTTCTTGTCCAGCTGACGCTTGAAAACCGTGCCGCCGGTTTAGCGTTGAACGGCGCGGTCACGTTATTAGCCATAAAGCTCATTCGTTTTCAGCGTAGGGCTGCATGTTTACACAGAAACCGGGCTCACACCGAATCTTAGCCGTTTTCTGTTGGTCAAAGCAGCGAATCTGTGCGCGCGAAATGGTTGGACTATGGTCGCGCGAAATTTACGATCACGTGGAGTGGACGGAAAAAAACGTGACCGCACCGGAACCAATGTGAAAAGGTGACTCTTTAAAACCCGTTTCTCAACGCTGTAATCTTCACAATCTATGTTCATCAGAATGGGCCTTTAATTGAAACGCTGCTTTTGTATATGTTTGGTAAGATGTGcatatgctttttatttcttttcttcttttttattttgtaggtCAGGGCAGTGCCTTACATCAGACATAAACAGTACACAACCTAGCATTCCTTCATTGTTCACACCTGCTTGTAATCATTAAACGAAAACGCCTTGTGTTTTACCGTTGtctacttttttgtgtgtgtgaaaactcTGCTTTCAAATAATTGAGAAttggaaataaattatattaatccCCA

Function

symbol description
rfk Predicted to enable riboflavin kinase activity. Predicted to be involved in FMN biosynthetic process and riboflavin metabolic process. Predicted to act upstream of or within riboflavin biosynthetic process. Predicted to be active in mitochondrion. Orthologous to human RFK (riboflavin kinase).

NR:

description
riboflavin kinase

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0009231 riboflavin biosynthetic process biological_process
GO:0008531 riboflavin kinase activity molecular_function

KEGG:

id description
K00861 RFK, FMN1; riboflavin kinase

RNA

RNA id representative length rna type GC content exon number start site end site
TU96674 False 1865 TUCP 0.45 5 20030057 20033607
XM_043247562.1 True 2008 mRNA 0.46 4 20030034 20033606

Neighbor

gene id symbol gene type direction distance location
LOC122350617 LOC107741001,LOC107683902,LOC107565130 coding upstream 25345 20000560 ~ 20004689 (+)
nkx6.3 nkx6.3,LOC107548267,LOC107726306,LOC107702846,LOC107565133,LOC107740986,LOC107683904 coding upstream 74912 19950263 ~ 19955122 (+)
prlhr2a prlhr2a,LOC107726477,LOC107569575,LOC107740998,LOC107702854,LOC107683906,LOC107565126 coding upstream 283987 19733646 ~ 19746047 (+)
got1l1 got1l1,LOC107725565,LOC107702805,LOC107569578 coding upstream 325624 19691435 ~ 19704410 (+)
npm2a npm2a,LOC107550946,LOC107740978,LOC107683882,LOC107724550,LOC107702849,LOC107569577 coding upstream 338740 19688885 ~ 19691294 (+)
adamts13 adamts13,LOC107548275,LOC107725310,LOC107702807 coding downstream 68605 20102212 ~ 20121183 (+)
praf2 praf2,LOC107756831,LOC107691574,LOC107565129,LOC107702816 coding downstream 106383 20139990 ~ 20142192 (+)
cacna1fa cacna1f,LOC107756819,LOC108426741 coding downstream 108858 20142465 ~ 20168391 (+)
bag4 bag4,LOC107691566,LOC107571962,LOC107702866,LOC107548251 coding downstream 235872 20269479 ~ 20276838 (+)
LOC122350573 LOC107756840,LOC107723029,LOC107702818,LOC107571965,LOC107691584 coding downstream 243367 20276974 ~ 20279081 (+)
G65361 NA non-coding upstream 89165 19940107 ~ 19940869 (+)
G65295 rab11fip1,LOC107579780,LOC107683894,LOC107724309,LOC107565115,LOC107740979 non-coding upstream 249282 19759470 ~ 19780752 (+)
G65284 NA non-coding upstream 277433 19694380 ~ 19752601 (+)
G65268 NA non-coding upstream 470865 19558873 ~ 19559169 (+)
G65267 NA non-coding upstream 471548 19557544 ~ 19558486 (+)
G65403 LOC107702858,LOC107723482 non-coding downstream 6339 20039946 ~ 20040563 (+)
G65402 NA non-coding downstream 16360 20049967 ~ 20053522 (+)
G65415 NA non-coding downstream 31971 20065578 ~ 20066941 (+)
G65429 NA non-coding downstream 66421 20100028 ~ 20100352 (+)
G65436 NA non-coding downstream 94376 20127983 ~ 20128820 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other upstream 756264 19272092 ~ 19273770 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other upstream 828347 19199988 ~ 19201687 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other upstream 877729 19119944 ~ 19152305 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other upstream 933963 19094947 ~ 19096071 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other upstream 1307788 18695454 ~ 18722246 (+)
timm17b timm17b,LOC107722912 other downstream 101512 20135119 ~ 20139364 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other downstream 389674 20423281 ~ 20431832 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other downstream 924993 20958600 ~ 20972040 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other downstream 1168841 21202448 ~ 21204346 (+)
slc25a37 slc25a37,LOC107710846,LOC107747712,LOC107559458,LOC107678377 other downstream 1325630 21359237 ~ 21374625 (+)

Expression


Co-expression Network