timm17b (timm17b,LOC107722912)


Basic Information

Item Value
gene id timm17b
gene name timm17b,LOC107722912
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20135119 ~ 20139364 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU96758
CGGCAGGTTATCATGGAGGAGTATGCCCGTGAACCCTGGCGGGCCGCTGGCCATGGTGGGCTCTGCAATGATGGGAGGGATCCTGCTTGCCCTAATCGAGGGATTTGGGATACTTCTTACGAGATACACAGCGCAGCAGTTCCAGAATCCCAGTCCTTTTGTGGAGGACCCGAGTCAGCTTCCCCCGAAAGAAGGCCAAGAGACACGCGGTTATGGGCAGTATCAGTAAAATCACTGTCGCGGTGGTGACTGTAATATTATAGACTGTGAAACAAGAGAGGATTGTTAGAAGTTTAGGACCCTTATCATAGTTGACATTCCCCCTCTTAGACAGGGGGATCCTCCTGAACCTCTCATCCTCTATTATATGGCCACTCAGGGGCAAGCAGTATGTTTCATGTATGAGTTGTAATATAAACTTGTATTCTGTCACGTTGAAAAGGGCATATTGTCACACTCTCCCAAAGATTTGAATCAAGCATACTGAGACAGAACTCAgtctatttttttatagttacaGTCCTGTTTGAACGTCTCATACTGATATACAAATACACTGTACAGATAACTAGATCGACGTGAAGAAGACATGAGAGTTTATTTCAAAATAGtcaaaaagtagatttttacaTCACTGATGCAGTCTTATGAAAACGAGCAGTGTAAAGTTACAGAACATTTTATATGAGACTTTTCTTGATCTATTACGACCTGAACCTGAATACACCAGTGATCTGTgttacattttgcttttaaatcctTGTTATAATTGATATCTTTCGGAGATttcactcttttccattcatgcTAGATTGCctgtcttccttttttttttttttttttttttttacttataaaatgaaattatttgatCTCTGAAGCACAGTGTGCAGTCAGTAGAGACACCATTGTTGAAGGTGATATTCAACTTTAATGTTCCTCTaccaaagaatatttttgtcCCCTCCATAATTTCAGTCTCACCAGTTTGGCACTGATTATATTCCCACGCTCACTTCATCCCAATCTTTGTGTAATGTCctgtagatttttttaaatgaattatttatacatttttggagtctcaaaaagtattttatggtCGATTGTTAGTATTGTAAGAGATGTTATTACATGTTAATAATGGAGCTGGAACCCTGTTGTATTGGTACTGTTTGGctagtgtttttgtttctacACTAAAAATGTCTGGA
>XM_043247736.1
TTATATTTGTTTCGATGTAGCCcttgtatgttgttttttcctAAGTTTTAAACGGAGCCCGCCTCGACTAGTTAACGGTCGCTCGGTTAACCGTCTCTCGCGTCACGGGGAGATCGCGTAAGCGCTGTGACGTCGGCAGGTTATCATGGAGGAGTATGCCCGTGAACCCTGtccATGGAGGATAGTTGATGACTGTGGGGGTGCGTTCACCATGGGGGCCATTGGAGGGGGGGTGTTCCAGTCCGTTAAAGGCTTTCGAAACGCACCTGTGGGTGTTCGACACAGGCTACGAGGGAGCGCAAATGCGGTGCGAGTAAGAGCGCCACAAATCGGAGGTAGTTTCGCTGTGTGGGGTGGCCTGTTTTCCACCATCGACTGCGGCCTGGTGCGTTTGCGGGGGAAAGAAGACCCGTGGAACTCCATCACCAGCGGAGCCATGACCGGAGCTATACTGGCTGCTCGCAGCGGGCCGCTGGCCATGGTGGGCTCTGCAATGATGGGAGGGATCCTGCTTGCCCTAATCGAGGGATTTGGGATACTTCTTACGAGATACACAGCGCAGCAGTTCCAGAATCCCAGTCCTTTTGTGGAGGACCCGAGTCAGCTTCCCCCGAAAGAAGGCCAAGAGACACGCGGTTATGGGCAGTATCAGTAAAATCACTGTCGCGGTGGTGACTGTAATATTATAGACTGTGAAACAAGAGAGGATTGTTA

Function

symbol description
timm17b Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human TIMM17B (translocase of inner mitochondrial membrane 17B).

NR:

description
PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-B

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96758 True 1214 lncRNA 0.39 3 20135252 20139364
XM_043247736.1 False 714 mRNA 0.55 6 20135119 20138438

Neighbor

gene id symbol gene type direction distance location
adamts13 adamts13,LOC107548275,LOC107725310,LOC107702807 coding upstream 13936 20102212 ~ 20121183 (+)
LOC122350617 LOC107741001,LOC107683902,LOC107565130 coding upstream 130430 20000560 ~ 20004689 (+)
nkx6.3 nkx6.3,LOC107548267,LOC107726306,LOC107702846,LOC107565133,LOC107740986,LOC107683904 coding upstream 179997 19950263 ~ 19955122 (+)
prlhr2a prlhr2a,LOC107726477,LOC107569575,LOC107740998,LOC107702854,LOC107683906,LOC107565126 coding upstream 389072 19733646 ~ 19746047 (+)
got1l1 got1l1,LOC107725565,LOC107702805,LOC107569578 coding upstream 430709 19691435 ~ 19704410 (+)
praf2 praf2,LOC107756831,LOC107691574,LOC107565129,LOC107702816 coding downstream 626 20139990 ~ 20142192 (+)
cacna1fa cacna1f,LOC107756819,LOC108426741 coding downstream 3101 20142465 ~ 20168391 (+)
bag4 bag4,LOC107691566,LOC107571962,LOC107702866,LOC107548251 coding downstream 130115 20269479 ~ 20276838 (+)
LOC122350573 LOC107756840,LOC107723029,LOC107702818,LOC107571965,LOC107691584 coding downstream 137610 20276974 ~ 20279081 (+)
rsph14 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 coding downstream 139872 20279236 ~ 20283828 (+)
G65436 NA non-coding upstream 6299 20127983 ~ 20128820 (+)
G65429 NA non-coding upstream 34767 20100028 ~ 20100352 (+)
G65415 NA non-coding upstream 68178 20065578 ~ 20066941 (+)
G65402 NA non-coding upstream 81597 20049967 ~ 20053522 (+)
G65403 LOC107702858,LOC107723482 non-coding upstream 94556 20039946 ~ 20040563 (+)
G65446 LOC107571955,LOC107756833,LOC107702863,LOC107722433,LOC107548250 non-coding downstream 43050 20182414 ~ 20203582 (+)
G65478 NA non-coding downstream 101334 20240698 ~ 20307802 (+)
G65497 NA non-coding downstream 278745 20418109 ~ 20455290 (+)
G65504 NA non-coding downstream 301445 20440809 ~ 20441900 (+)
G65496 LOC107739648,LOC107702878,LOC107756849,LOC107579038,LOC107566954,LOC107573968 non-coding downstream 317875 20457239 ~ 20459236 (+)
rfk rfk,LOC107740987,LOC107723557 other upstream 101512 20030034 ~ 20033607 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other upstream 861349 19272092 ~ 19273770 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other upstream 933432 19199988 ~ 19201687 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other upstream 982814 19119944 ~ 19152305 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other upstream 1039048 19094947 ~ 19096071 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other downstream 283917 20423281 ~ 20431832 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other downstream 819236 20958600 ~ 20972040 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other downstream 1063084 21202448 ~ 21204346 (+)
slc25a37 slc25a37,LOC107710846,LOC107747712,LOC107559458,LOC107678377 other downstream 1219873 21359237 ~ 21374625 (+)
LOC122350761 rhobtb2,LOC107553166,LOC107678456,LOC107718938,LOC107665202,LOC107710844 other downstream 1330626 21469990 ~ 21538986 (+)

Expression


Co-expression Network