LOC122350816 (slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956)


Basic Information

Item Value
gene id LOC122350816
gene name slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20423281 ~ 20431832 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU96852
CAGCGTCATGTATGAGTTTGTTGGTAAAAGTTCTCCCTTCCTCGTCCTTGCCTTCTTGGCTGTGTTTGATGGAGCGCTCCAGCTCTGCATCCTTCAGCCCTCAAAAATATCTCCGGGGAGCGCGGAAGGAACACCGTTACTCAATCTGCTGAAGGATCCCTACATACTCATtagtgcagGGTCGTTGTGCTTTGCAAACATGGGGGTGGCTATTTTAGAGCCCACTCTTCCCATCTGGATGATGCAAACAATGTGCTCGCCAAAATGGCAGCTTGGTATGGCTTTCCTACCTGCCAGTGTTTCTTACCTCATTGGGACAAATCTGTTTGGTGTCCTGGCCAATAAAATGGGAAGGTGGCTGTGTTCCATGATCGGCATGCTTATAGTCGGCATCAGTCTGCTCTGCGTTCCTTTCGCCAAAGACATCTACGGGCTTATTGGTCCCAATGGAGGGTTGGGATTTGCCATcgGAATGGTTGATTCGTCTATGATGGCTATAATGGGTTACCTAGTGGATATTCGCCACGTGTCTGTCTACGGAAGCGTGTATGCCATTGCTGATGTTGCCCTCTGCATGGGATTTGCTGTTGGTCCATCGACCGGAGGGGCTATAGTAAGAGCCATAGGCTTCTCCAATCTCATGGTGATCATCGGCGTTATCAACATCCTGTATGCAC
>XM_043247550.1
TACACAGGAAACCAAACGACACAGGcagaaaacacaagcacatgaTCACAGGTTACGACGCTTCCTCAACAGAAATGCGCTTTCACGTGATACTTCCAGACTTTCGATATTATTTCAGAGACTTAATGAACAATCATGCAGTGGTTTCACAGTGCGGCGATTAGGTCGCTGACGGAGCAGTGTTCCCAAGTAAAAGCTAGCAGCGGCCGCTGATTGTGTGTGCTGCGTCTGGATGCGAGATCACGGATAAAGGCTCATTGTGGTGAAAAGAAGCCTGCAGGTCATTCACCTAGCCAATAAAGAGCAGCAGATGCACACAATTACTCCCGCTATGacgcagtgtttgtgtgtgtgcgtgtacgtGTGCATGTCTGTATATTTCCTCCAAAGACCCCTCAACGGCTCACACGCAGGCAACAAGTGACCCCTGCATCACACACCTGCTCTGGACATACACTCGCGCACTGAAGAAGAGAATGCATCCTAAGTGACAGAGCTGCATCATGGCCATGCTGAACCCTATGGACTGGATCAGAGAGAGCAGGGGCTCTCCCCGCCTGGTGcttgtcattgtgtgtgtggcCCTGCTCCTGGATAACATGCTGCTAACGGTTGTGGTTCCCATCATCCCAACCTACCTGTATGCCATAGAGCACCAGGCACAAGAGCGCCCGTCTGCCGCCCCCTCCGAGGATCAGCCCACCTTCACCTCCATCTTCTCCCTGTACGACAACAGCACCTTCAGCATCAGCACCGCCAATCTCAGCATCTCCTCCGGCGCTAATGGAAGTTCGGCGCTCAACAGCAGCTCCGCCGAGCGACACAGGTGTAAAGACGACAGCCAGTTTCTGGAAGAGGAGAATGTGAGAGTTGGGCTGCTGTTTGCCTCCAAAGCCCTGGTGCAGCTCATGGTCAACCCGTTTGTGGGCCCGCTGACCAACAGAATTGGATATCACATACCGATGTTCGCTGGGTTTATCATCATGTTTGTCTCCACAATAATGTTTGCCTTCTCGGGGACATACGGGCTGCTGTTTTTCGCCCGCTCTTTGCAGGGAATTGGATCATCCTTTTCCTCTGTGGCAGGTCTGGGAATGCTAGCAAGTGTGTACACAGATGACAACGAGAGAGGAATTGCCATGGGAATCGCATTGGGAGGACTTGCCATGGGAGTGCTCATTGGAGCTCCATTTGGCAGCGTCATGTATGAGTTTGTTGGTAAAAGTTCTCCCTTCCTCGTCCTTGCCTTCTTGGCTGTGTTTGATGGAGCGCTCCAGCTCTGCATCCTTCAGCCCTCAAAAATATCTCCGGGGAGCGCGGAAGGAACACCGTTACTCAATCTGCTGAAGGATCCCTACATACTCATtagtgcagGGTCGTTGTGCTTTGCAAACATGGGGGTGGCTATTTTAGAGCCCACTCTTCCCATCTGGATGATGCAAACAATGTGCTCGCCAAAATGGCAGCTTGGTATGGCTTTCCTACCTGCCAGTGTTTCTTACCTCATTGGGACAAATCTGTTTGGTGTCCTGGCCAATAAAATGGGAAGGTGGCTGTGTTCCATGATCGGCATGCTTATAGTCGGCATCAGTCTGCTCTGCGTTCCTTTCGCCAAAGACATCTACGGGCTTATTGGTCCCAATGGAGGGTTGGGATTTGCCATcgGAATGGTTGATTCGTCTATGATGGCTATAATGGGTTACCTAGTGGATATTCGCCACGTGTCTGTCTACGGAAGCGTGTATGCCATTGCTGATGTTGCCCTCTGCATGGGATTTGCTGTTGGTCCATCGACCGGAGGGGCTATAGTAAGAGCCATAGGCTTCTCCAATCTCATGGTGATCATCGGCGTTATCAACATCCTGTATGCACCCCTTTGCTTCTTCCTCAAAAGTCCTGCTGTTCAGGAGGAGAAGATGGCTATTATAAATCAGGAGTGTCCGATGCATGTGAAGGGCTACAATACACAGCGTGGATACAGGGAATTCCCTCTGAGTGATGAAAGCGAGGAGGACACTGAAGAGTGACGCACATATACCTATAAAGGAACCCGCCGTCAAACCATTAGCCCCGATTCAAAAGGtttcaaatgaataatattGGAACTATCTCTGTTCTGCACCACGATCacattttttgtgcacaaagtgAATATCGTATTTGTAAGCTTGTAAAGTGTTGCTCGTCCTGTGTCTCGTCACGTCGGTGGGTTTGAATGAAATAAACGGGCCTAGTTTATCGA

Function

symbol description
slc18a1 Predicted to enable serotonin:sodium symporter activity. Predicted to be involved in aminergic neurotransmitter loading into synaptic vesicle. Predicted to be located in clathrin-sculpted monoamine transport vesicle membrane. Predicted to be active in synaptic vesicle membrane and terminal bouton. Implicated in bipolar disorder and schizophrenia. Biomarker of von Hippel-Lindau disease.

NR:

description
PREDICTED: chromaffin granule amine transporter-like

GO:

id name namespace
GO:0006855 drug transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08155 SLC18A1_2, VMAT; MFS transporter, DHA1 family, solute carrier family 18 (vesicular amine transporter), member 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
TU96852 False 677 TUCP 0.50 9 20429019 20431387
XM_043247550.1 True 2242 mRNA 0.50 16 20423281 20431832

Neighbor

gene id symbol gene type direction distance location
ppiaa ppiaa,LOC107702873,LOC107722998,LOC107756846,LOC107691558 coding upstream 5468 20414481 ~ 20417813 (+)
ogdha ogdha,LOC107691557,LOC107756845,LOC107702872,LOC107566960 coding upstream 9468 20390033 ~ 20413813 (+)
adam9 LOC107591921,LOC107722987,LOC107566966,LOC107702867,LOC107691559 coding upstream 34025 20360501 ~ 20389256 (+)
fhip2b LOC107756841,LOC107691562,LOC107702868,LOC107573666,LOC107722988 coding upstream 71295 20344434 ~ 20351986 (+)
si:dkey-220o5.5 LOC107691563,LOC107571967,LOC107756842,LOC107702871,LOC107573665 coding upstream 80339 20308907 ~ 20342942 (+)
tti2 LOC107756847,LOC107691556,LOC107566971 coding downstream 1216 20433048 ~ 20439101 (+)
LOC122350589 LOC107722994,LOC107722996,LOC107702877,LOC107591954,LOC107573969,LOC107702875 coding downstream 12536 20444368 ~ 20447625 (+)
pabpc1l pabpc1l,LOC107566968,LOC107702880,LOC107756822 coding downstream 36288 20468120 ~ 20479602 (+)
LOC122351139 NA coding downstream 46360 20478192 ~ 20478298 (+)
LOC122351140 NA coding downstream 49454 20481286 ~ 20481392 (+)
G65478 NA non-coding upstream 115479 20240698 ~ 20307802 (+)
G65446 LOC107571955,LOC107756833,LOC107702863,LOC107722433,LOC107548250 non-coding upstream 219699 20182414 ~ 20203582 (+)
G65436 NA non-coding upstream 294461 20127983 ~ 20128820 (+)
G65429 NA non-coding upstream 322929 20100028 ~ 20100352 (+)
G65415 NA non-coding upstream 356340 20065578 ~ 20066941 (+)
G65504 NA non-coding downstream 8977 20440809 ~ 20441900 (+)
G65496 LOC107739648,LOC107702878,LOC107756849,LOC107579038,LOC107566954,LOC107573968 non-coding downstream 25407 20457239 ~ 20459236 (+)
G65494 NA non-coding downstream 28301 20460133 ~ 20461465 (+)
G65506 NA non-coding downstream 32926 20464758 ~ 20465113 (+)
G65507 NA non-coding downstream 34067 20465899 ~ 20467207 (+)
timm17b timm17b,LOC107722912 other upstream 283917 20135119 ~ 20139364 (+)
rfk rfk,LOC107740987,LOC107723557 other upstream 389674 20030034 ~ 20033607 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other upstream 1149511 19272092 ~ 19273770 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other upstream 1221594 19199988 ~ 19201687 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other upstream 1270976 19119944 ~ 19152305 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other downstream 526768 20958600 ~ 20972040 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other downstream 770616 21202448 ~ 21204346 (+)
slc25a37 slc25a37,LOC107710846,LOC107747712,LOC107559458,LOC107678377 other downstream 927405 21359237 ~ 21374625 (+)
LOC122350761 rhobtb2,LOC107553166,LOC107678456,LOC107718938,LOC107665202,LOC107710844 other downstream 1038158 21469990 ~ 21538986 (+)
b2ml LOC107562648,LOC107710837,LOC107665198,LOC107728367 other downstream 1319930 21751762 ~ 21754720 (+)

Expression


Co-expression Network