LOC122350956


Basic Information

Item Value
gene id LOC122350956
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20136603 ~ 20140200 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU97000
TCCAGACATTTTTAGTgtagaaacaaaaacactagCCAAACAGTACCAATACAACAGGGTTCCAGCTCCATTATTAACATGTAATAACATCTCTTACAATACTAACAATCGaccataaaatactttttgagactccaaaaatgtataaataattcatttaaaaaaatctacagGACATTACACAAAGATTGGGATGAAGTGAGCGTGGGAATATAATCAGTGCCAAACTGGTGAGACTGAAATTATGGAGGGgacaaaaatattctttggtAGAGGAACATTAAAGTTGAATATCACCTTCAACAATGGTGTCTCTACTGACTGCACACTGTGCTTCAGAGatcaaataatttcattttataagtaaaaaaaaaaaaaaaaaaaaaaaaggaagacagGCAATCTAgcatgaatggaaaagagtgaaATCTCCGAAAGATATCAATTATAACAaggatttaaaagcaaaatgtaacACAGATCACTGGTGTATTCAGGTTCAGGTCGTAATAGATCAAGAAAAGTCTCATATAAAATGTTCTGTAACTTTACACTGCTCGTTTTCATAAGACTGCATCAGTGAtgtaaaaatctactttttgaCTATTTTGAAATAAACTCTCATGTCTTCTTCACGTCGATCTAGTTATCTGTACAGTGTATTTGTATATCAGTATGAGACGTTCAAACAGGACtgtaactataaaaaaatagacTGAGTTCTGTCTCAGTATGCTTGATTCAAATCTTTGGGAGAGTGTGACAATATGCCCTTTTCAACGTGACAGAATACAAGTTTATATTACAACTCATACATGAAACATACTGCTTGCCCCTGAGTGGCCATATAATAGAGGATGAGAGGTTCAGGAGGATCCCCCTGTCTAAGAGGGGGAATGTCAACTATGATAAGGGTCCTAAACTTCTAACAATCCTCTCTTGTTTCACAGTCTATAATATTACAGTCACCACCGCGACAGTGATTTTACTGATACTGCCCATAACCGCGTGTCTCTTGGCCTTCTTTCGGGGGAAGCTGACTCGGGTCCTCCACAAAAGGACTGGCTGTAGAGGAAGACAAGATGCAGATAGTGAAGACCTCTAAAGCCGCTTCAACGAAACAGAGATTCCTGGCCAGAAGAGCAGTACCAATTTCGACCTTTAATCAACTCTGGATCATCCAGATCTCTTCTGACAAGCGCAACTCACGATTCTGGAACTGCTGCGCTGTGTATCTCGTAAGAAGTATCCCAAATCCCTCGATTAGGGCAAGCAGGATCCCTCCCATCATTGCAGAGCCCACCATGGCCAGCGGCCCGCCTGAAATACAAACAGAGCACGTAATTCATACCTTTCCAGTTCGCCAACTAATTATCCAGTTCTAAAGATTAACGCTGCGTGAACTAATACATAATACTACAGATCATCAGATTAATAATACCAATAGATTGTTACATATGTCCAGTGCCCGAATTTTTAGCCCGATCAGTTTATAATCAATGATTTCATCCAACATCGAGGAGCACATATTGTTTACGTATTTCATACTAGCCCGTTACCAATGAGGCACATGAGTTTATCGTGAAAGCCTCAGTGGAGTTTACAGTCTGTTAAACGCTGCTCTCCGGCCTCACTGTTAACCAAACAAGGACCGAGGCGTACTGCGAGCAGCCAGTATAGCTCCGGTCATGGCTCCGCTGGTGATGGAGTTCCACGGGTCTTCTTTCCCCCGCAAACGCACCAGGCCGCAGTCGATGGTGGAAAACAGGCCACCCCACACAGCGAAACTACCTGC
>TU97001
GACTACGAGCAGAAAAGACACGGCGGAGGCGAAATAGTTGGACTGGTAATACAGCAGGTTGTTAATGATCCGGTTATTCCAGCGATCTAAGTTACGGACATCAGGCACTGAGAACCGGGCCGAGCCCAGCAGAAAATCGTCCAGGGTTCGGAAAGGCGGAGGCTGAACGTCCACCATTTTTGACGCTTTTGATGACTACATTTACCGGCGTGCATTGCGAACCCACGGCGCTGAGAATAATAGGAAAAAGCTGGCCGACGCGCACCAGCGTCAAAGGGAGCGACTGACATCCGAAGGAAACCACTCTCTATTACTGTTAGACGTAAAGAAAAGTTCAGTGAAAAATCTATAATATTACAGTCACCACCGCGACAGTGATTTTACTGATACTGCCCATAACCGCGTGTCTCTTGGCCTTCTTTCGGGGGAAGCTGACTCGGGTCCTCCACAAAAGGACTGGCTGTAGAGGAAGACAAGATGCAGATAGTGAAGACCTCTAAAGCCGCTTCAACGAAACAGAGGTAATACAACTTTAACAACGTgatacatgtatttaaaataaagatcgGAGCATGGAAGATGGAAAACACTACATTTTGGAGTCAAATGTTTTATCCGTTTTCTCATTTTAGATCATTTGTTGC
>XR_006251659.1
TGCGAACCCACGGCGCTGAGAATAATAGGAAAAAGCTGGCCGACGCGCACCAGCGTCAAAGGGAGCGACTGACATCCGAAGGAAACCACTCTCTATTACTGTTAGACGTAAAGAAAAGTTCAGTGAAAAATCTATAATATTACAGTCACCACCGCGACAGTGATTTTACTGATACTGCCCATAACCGCGTGTCTCTTGGCCTTCTTTCGGGGGAAGCTGACTCGGGTCCTCCACAAAAGGACTGGCTGTAGAGGAAGACAAGATGCAGATAGTGAAGACCTCTAAAGCCGCTTCAACGAAACAGAGcacGTCATGCATGGATAATTCTCCCAAAAACATCTCTTTATACCGTTCGACGCCTGATCATTGTCCTTTTCGACAAAGAAAATAAGAGTGAGATTGAGACATTTTTGTATCCGTAGATCAACAAAAACGATTTGCACTGTTGTCTGAGCGCTCAAAGGTGATGTACGTACTCTTCTAAAGCCAAAAAATAGCATGAAAAGTTTGTAGATGCATAGCTGTTtctctaaaaaaataacacagctactctgaaatgtgttttgggCAGATTCCTGGCCAGAAGAGCAGTACCAATTTCGACCTTTAATCAACTCTGGATCATCCAGATCTCTTCTGACAAGCGCA

Function

GO:

id name namespace
GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97000 True 1795 lncRNA 0.41 2 20136603 20139364
TU97001 False 644 lncRNA 0.46 2 20138116 20140200
XR_006251659.1 False 648 lncRNA 0.44 3 20137195 20139985

Neighbor

gene id symbol gene type direction distance location
ubap2b LOC107691576,LOC107740989,LOC107565112 coding downstream 36973 20084336 ~ 20099630 (-)
pcsk5b pcsk5b,LOC107723238,LOC107702857,LOC107691579,LOC107548272,LOC107740995 coding downstream 56068 20035375 ~ 20080535 (-)
foxb2 LOC107683901,LOC107548258,LOC107565132,LOC107726218,LOC107726129,LOC107702842 coding downstream 123586 20010422 ~ 20013017 (-)
LOC122350616 LOC107740984,LOC107683875,LOC108426719,LOC106585610 coding downstream 134490 19980784 ~ 20002113 (-)
inpp5l inpp5l,LOC107683877,LOC107565107,LOC107702838,LOC107723704,LOC107740985,LOC107548265 coding downstream 159032 19957057 ~ 19977571 (-)
LOC122350988 LOC107756829,LOC107691572,LOC107571956,LOC107722996 coding upstream 28330 20168530 ~ 20172455 (-)
aebp1b LOC107571966,LOC107756828,LOC107691571,LOC107722622,LOC107702862,LOC107548278 coding upstream 32975 20173175 ~ 20190208 (-)
elmod3 LOC107756833,LOC107702863,LOC107722433,LOC107571955,LOC107691569 coding upstream 59456 20199656 ~ 20216478 (-)
star star,LOC107691570,LOC107571960,LOC107548259,LOC107702817 coding upstream 76545 20216745 ~ 20220879 (-)
grk5l grk5l,LOC107756834,LOC107691567,LOC107548280,LOC107702864 coding upstream 82316 20222516 ~ 20265923 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding downstream 32603 20103337 ~ 20104000 (-)
LOC122349935 NA non-coding downstream 391953 19708097 ~ 19744650 (-)
G65244 NA non-coding downstream 727563 19406755 ~ 19409040 (-)
G65201 NA non-coding downstream 868413 19100929 ~ 19268190 (-)
G65199 NA non-coding downstream 869498 19099533 ~ 19267105 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding upstream 25856 20166056 ~ 20166372 (-)
LOC122350542 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 non-coding upstream 141382 20281582 ~ 20284840 (-)
G65682 NA non-coding upstream 324351 20464551 ~ 20464756 (-)
LOC122349883 NA non-coding upstream 351649 20491849 ~ 20505973 (-)
G65696 nr6a1a,nr6a1,LOC107721088,LOC107698081 non-coding upstream 419431 20559631 ~ 20559971 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 2258 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 703312 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 934226 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1088634 19023713 ~ 19047969 (-)
G65033 NA other downstream 1576269 18559667 ~ 18560334 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 274865 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 578740 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 874793 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1631268 21771468 ~ 21776620 (-)
G66090 NA other upstream 1644504 21784704 ~ 22254189 (-)

Expression


Co-expression Network