LOC122350542 (rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028)


Basic Information

Item Value
gene id LOC122350542
gene name rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20281582 ~ 20284840 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU97028
CATGTGCAATTTATCACCAGTTCCAGGGACAACGACTAGCAGACAATCTAGTTTTAGTCGACAGCTGGTGAAAGTGAAACAGATTGtagtttctttattattatttactagtAACATGCAAGTCGCATACGAAACAGACGCTATTAAGTGTAGAAACGGCTTGCCATAGGCACCTGTTCTCCGGTTCTCTCGCCTTGTGTTATGTAAAAGCGTCGCATCATCCACAGCCATAATCTCGCCGACTACATCCATCCTGTGGCGATTTGTGATTTCAGCTCCACAAAGAGCAAGGCACATTACCTTACGCCATAAAACGCGCTTGCCCCCATCACTTTAACATTACCTTACGCGGCGTGCCGCGGACGCGCGGTCGCGTTTCTCGCGCAAATAATTTCGCTCGAATCCGTTCAAGCAGACGCCGCGCGTGAAGTAGAAACTTACCTCTCCGGCAAATGCGAGCCCAAAACACACAGCCTCCACCCGCACTCCTCCCTGAGATATAATCCTCCTGCcgcttaaaaataataaaagacgACTTTCTAGCTCGCAGCCGGCAGAGCAGCCTCAGCGCGCGCCCCGTGTTCGCTCGGTCTGCTTGCCAAACACCAGCCACAAACATTTATCTGTCGTGACTCCGCATGTCGTGTGACAGATAGCGAGAACGTGCTCGCCGCCGCTGACCGCTGGTTCAATCCATTCGCAGCACCGAGGGGTTTTCCGAAAACATGACACTGCACATTTTCAGCCGTACCGGGATTAAACCGCGCCAACAGTAAACCACCATGGCTAGGACTGGTTTCTCTCAGGGTTTCCAGCAGATGACTTCGATGGCGGTGGACGCGGCCCTCTGGATGACGGCGCTGGGCACTACGGCAGCTGAAAGGTTTCTAACTTCACCGACGACGGCTTCATTTAGTGCTGACCCTTAGTGATAACGGCCGTGTTCATAATGGTCCCCGCAGCATTAGCCACAACCCCCTGGTCATCATCCGACAGCAGCTCGACTAACGTGGGCAGAAGATTCTCCTCGCACACCTTCATCTTCCCATCTGCGGGCACACTACAAGAAGAAAGGAGAGAATAAATCTCTCACCCCAGTGAAGTGAACCTGATCCAGACTGCCGCGTGCCCCGTCACCTGATTCCCACTAAAGCAGAGGTGGCTGCCCGGCGGATGGCGGGAGACGGCTGAGAGAGCTGATCTCTCAGGACGGGAACCGCGTCGCTCTCCAGCGCCGGAAGGGCGTTCACGCTCACGCAGAGGCTCAGTGTGGAGAGAATTAAAGCACGGATGCTCTCTTCTTCATCGGAGACCTTCAGCACCAGTCTGGGCACCAGCCCCATAGACACCATGAACACCGCTCCTGTAGGGACATGACCGGGGACCCGTCAGGGGAAAAActtctaaaacacatttttggatAAGAAGTACGATAATAGTCACCTGAAGGAAATTCAGCGATCCTGTTGAGTGCTCGGTGCATGTTTTTACGACAGGCATTCACGGGGTCCTCGATCAGTTTTGCGAGGGGACCCACAATGTCAAATTTCAAAAAGGCATCTCTGTGTGAACAAATGAAGGTCAAA
>TU97029
CATGTGCAATTTATCACCAGTTCCAGGGACAACGACTAGCAGACAATCTAGTTTTAGTCGACAGCTGGTGAAAGTGAAACAGATTGtagtttctttattattatttactagtAACATGCAAGTCGCATACGAAACAGACGCTATTAAGTGTAGAAACGGCTTGCCATAGGCACCTGTTCTCCGGTTCTCTCGCCTTGTGTTATGTAAAAGCGTCGCATCATCCACAGCCATAATCTCGCCGACTACATCCATCCTGTGGCGATTTGTGATTTCAGCTCCACAAAGAGCAAGGCACATTACCTTACGCCATAAAACGCGCTTGCCCCCATCACTTTAACATTACCTTACGCGGCGTGCCGCGGACGCGCGGTCGCGTTTCTCGCGCAAATAATTTCGCTCGAATCCGTTCAAGCAGACGCCGCGCGTGAAGTAGAAACTTACCTCTCCGGCAAATGCGAGCCCAAAACACACAGCCTCCACCCGCACTCCTCCCTGAGATATAATCCTCCTGCcgcttaaaaataataaaagacgACTTTCTAGCTCGCAGCCGGCAGAGCAGCCTCAGCGCGCGCCCCGTGTTCGCTCGGTCTGCTTGCCAAACACCAGCCACAAACATTTATCTGTCGTGACTCCGCATGTCGTGTGACAGATAGCGAGAACGTGCTCGCCGCCGCTGACCGCTGGTTCAATCCATTCGCAGCACCGAGGGGTTTTCCGAAAACATGACACTGCACATTTTCAGCCGTACCGGGATTAAACCGCGCCAACAGTAAACCACCATGGCTAGGACTGGTTTCTCTCAGGGTTTCCAGCAGATGACTTCGATGGCGGTGGACGCGGCCCTCTGGATGACGGCGCTGGGGTGAGTGAGTCTGCTCTTCAGCAGAGGCACATGCTCCAGCAGCAGAGCCCGGGCCCTGGGAACCTCTGCCAGGACTGTAAGGGCACGGAGGGCATTGGCACACACCGCTGTATTCTCACTCGCCACCAGCTGCAGCAGAGGGGCGATGGCACCTGCCTTCAGAGCCTCGGTCTTACCTGGAGACAGACGAGGAGATAGTCTAATTTAATATAGGGGGTTTCTAAGTCGATCCCGGG
>XR_006251606.1
CAGATAGCGAGAACGTGCTCGCCGCCGCTGACCGCTGGTTCAATCCATTCGCAGCACCGAGGGGTTTTCCGAAAACATGACACTGCACATTTTCAGCCGTACCGGGATTAAACCGCGCCAACAGTAAACCACCATGGCTAGGACTGGTTTCTCTCAGGGTTTCCAGCAGATGACTTCGATGGCGGTGGACGCGGCCCTCTGGATGACGGCGCTGGGCACTACGGCAGCTGAAAGGTTTCTAACTTCACCGACGACGGCTTCATTTAGTGCTGACCCTTAGTGATAACGGCCGTGTTCATAATGGTCCCCGCAGCATTAGCCACAACCCCCTGGTCATCATCCGACAGCAG

Function

symbol description
rsph14 Orthologous to human RSPH14 (radial spoke head 14 homolog).

NR:

description
PREDICTED: radial spoke head 14 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97028 True 1586 lncRNA 0.52 3 20281582 20284840
TU97029 False 1101 lncRNA 0.53 2 20283530 20284840
XR_006251606.1 False 350 lncRNA 0.56 3 20282169 20284191

Neighbor

gene id symbol gene type direction distance location
lsm1 lsm1,LOC107571959,LOC107548281 coding downstream 12166 20266843 ~ 20269416 (-)
grk5l grk5l,LOC107756834,LOC107691567,LOC107548280,LOC107702864 coding downstream 15659 20222516 ~ 20265923 (-)
star star,LOC107691570,LOC107571960,LOC107548259,LOC107702817 coding downstream 60703 20216745 ~ 20220879 (-)
elmod3 LOC107756833,LOC107702863,LOC107722433,LOC107571955,LOC107691569 coding downstream 65104 20199656 ~ 20216478 (-)
aebp1b LOC107571966,LOC107756828,LOC107691571,LOC107722622,LOC107702862,LOC107548278 coding downstream 91374 20173175 ~ 20190208 (-)
LOC122350834 LOC107756820,LOC107691590,LOC107591940 coding upstream 67682 20352522 ~ 20356527 (-)
LOC122350835 LOC107691561,LOC107756843,LOC107566957 coding upstream 71810 20356650 ~ 20360170 (-)
mak16 mak16,LOC107591933,LOC107756848,LOC107566970,LOC107702820,LOC107722986,LOC107691589 coding upstream 154422 20439262 ~ 20441908 (-)
LOC122351134 NA coding upstream 168191 20453031 ~ 20453131 (-)
ywhabb ywhabb,LOC107702878,LOC107573968,LOC107756849,LOC107691552,LOC103023259 coding upstream 169790 20454630 ~ 20459028 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding downstream 115210 20166056 ~ 20166372 (-)
LOC122350956 NA non-coding downstream 141382 20136603 ~ 20140200 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding downstream 177582 20103337 ~ 20104000 (-)
LOC122349935 NA non-coding downstream 536932 19708097 ~ 19744650 (-)
G65244 NA non-coding downstream 872542 19406755 ~ 19409040 (-)
G65682 NA non-coding upstream 179711 20464551 ~ 20464756 (-)
LOC122349883 NA non-coding upstream 207009 20491849 ~ 20505973 (-)
G65696 nr6a1a,nr6a1,LOC107721088,LOC107698081 non-coding upstream 274791 20559631 ~ 20559971 (-)
G65697 NA non-coding upstream 282318 20567158 ~ 20570293 (-)
G65704 NA non-coding upstream 325722 20610562 ~ 20610923 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 147237 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 848291 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 1079205 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1233613 19023713 ~ 19047969 (-)
G65033 NA other downstream 1721248 18559667 ~ 18560334 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 130225 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 434100 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 730153 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1486628 21771468 ~ 21776620 (-)
G66090 NA other upstream 1499864 21784704 ~ 22254189 (-)

Expression


Co-expression Network