G65696 (nr6a1a,nr6a1,LOC107721088,LOC107698081)


Basic Information

Item Value
gene id G65696
gene name nr6a1a,nr6a1,LOC107721088,LOC107698081
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20559631 ~ 20559971 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU97122
GTCGGCTTTGTTTCCCACCGTCTGCTAATCCACCTCGAAAACATGCAAACCACTTCGAGCCTGTTTTAGTCGTGCGTTTGAGGTGACGGATACAACGTTTTGGCTGACCTTTGCGGTTCATCCCCATCTGCAGGCACTTGAGCAGCCTGCAGTACTGGCAGCGGTTGCGCTGTTTGCGGGACATCTCGCAGTTCTTGTCGCGGCTGCAGCGGTAGACGCGCTTGTTGCAGATGCTGCGCTTGAAGAAGCCCTTGCAGCCCTCGCAGGAAATAATGCCATAGTGCAGTCCTGTGGCGCGGTCTCCGCAAATGAGACAAGAGCGCTGCTCAGCCTGGTCatct

Function

symbol description
nr6a1a Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and protein homodimerization activity. Predicted to be involved in cell migration; nervous system development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Is expressed in cranial ganglion; myotome; neural plate; and telencephalon. Orthologous to human NR6A1 (nuclear receptor subfamily 6 group A member 1).
nr6a1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in gamete generation and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of chromatin and transcription regulator complex.

NR:

description
PREDICTED: nuclear receptor subfamily 6 group A member 1-A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97122 True 341 lncRNA 0.56 1 20559631 20559971

Neighbor

gene id symbol gene type direction distance location
chmp4bb chmp4bb,LOC107756851,LOC107691553,LOC107702881,LOC107566963,LOC107573971 coding downstream 90726 20465898 ~ 20468905 (-)
LOC122350494 eif2s2,if2b,LOC107566961,LOC107756850,LOC107739644,LOC107691551,LOC107573966 coding downstream 95422 20460129 ~ 20464209 (-)
ywhabb ywhabb,LOC107702878,LOC107573968,LOC107756849,LOC107691552,LOC103023259 coding downstream 100603 20454630 ~ 20459028 (-)
LOC122351134 NA coding downstream 106500 20453031 ~ 20453131 (-)
mak16 mak16,LOC107591933,LOC107756848,LOC107566970,LOC107702820,LOC107722986,LOC107691589 coding downstream 117723 20439262 ~ 20441908 (-)
adgrd2 LOC107721081,LOC107678382,LOC107563844,LOC107570012,LOC107714589 coding upstream 32494 20592465 ~ 20614297 (-)
bcl2l16 bcl2l16,LOC107714610,LOC107556213,LOC107698085,LOC107721090,LOC107678407 coding upstream 102198 20662169 ~ 20664529 (-)
si:dkey-90l8.3 si:dkey-90l8.3,LOC107714563,LOC107698086,LOC107556214,LOC107563853,LOC103024553,LOC108426648,LOC108264996 coding upstream 130859 20690830 ~ 20696690 (-)
ccn1l2 LOC107698087,LOC107556215,LOC107563854,LOC107678465,LOC107714581,LOC107721104 coding upstream 140052 20700023 ~ 20707196 (-)
stambpb stambpb,LOC107714511,LOC107721092,LOC107678409,LOC107563848,LOC103470718 coding upstream 188468 20748439 ~ 20756847 (-)
LOC122349883 NA non-coding downstream 53658 20491849 ~ 20505973 (-)
G65682 NA non-coding downstream 94875 20464551 ~ 20464756 (-)
LOC122350542 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 non-coding downstream 274791 20281582 ~ 20284840 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding downstream 393259 20166056 ~ 20166372 (-)
LOC122350956 NA non-coding downstream 419431 20136603 ~ 20140200 (-)
G65697 NA non-coding upstream 7187 20567158 ~ 20570293 (-)
G65704 NA non-coding upstream 50591 20610562 ~ 20610923 (-)
G65717 NA non-coding upstream 163295 20723266 ~ 20725454 (-)
G65732 NA non-coding upstream 321051 20881022 ~ 20881433 (-)
G65728 dbnl non-coding upstream 326253 20886224 ~ 20892629 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other downstream 138335 20415065 ~ 20421296 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 425286 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 1126340 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 1357254 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1511662 19023713 ~ 19047969 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 158969 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 455022 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1211497 21771468 ~ 21776620 (-)
G66090 NA other upstream 1224733 21784704 ~ 22254189 (-)
G66119 gfpt1,LOC107710818,LOC107752562,LOC107678434,LOC102792631 other upstream 1454002 22013973 ~ 22025791 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002420 NA coding CM030136.1 CM030136.1 13537482 ~ 13570758 (-)