LOC122350336 (LOC107714596,LOC107556216,LOC107698089)


Basic Information

Item Value
gene id LOC122350336
gene name LOC107714596,LOC107556216,LOC107698089
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20718940 ~ 20723155 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU97155
CTTCTTTCAGGGACTTTGAGGCCGCTGTGGATGGAGCTCATTGTTTCAGGGTGCTGTGCTCTCACCCATGCTGCTGGGACACCGGGCGCCGCTGCCACCGAGGAATCAAACGACACACCCCAGAACGCCTGAGCAAACACGCTCTCAAAAACGAGGACTTTCCATCTCTGAGTGTAGTTGATGTCTCTGAATGGACCGGACCGTTGAATGAAAGGCCACCGTACGGTGCTGACACAGAGGCGTCTTTGAATAATGTCTCTTGCGTTTCTGTCATCAAACAGAGTAAAGACACTCGGGAGGTTAAGAGGGCAAATCTTTCCTTCCCAGACATCACGTTGCCCAGCGATAATCCAAACAGTACCATCAAGTTAAATACAGTTGACATGAGTCCTTTGGGCGGCTCTGAGTGGTCAGAGTGTCCAGTGTTTATGTGGATTCCTAACCTGCACCACGAAACTCGGTGGATCCGCCAAAACAAGCCAACCAGCGGAAGAAGTGCAACGGTCGTGAAAGGAGAGGGAAGAGAGGAATGAACTCTACACAAGAGGGCGCTGGCAGCCCGCGCTGGGTGGGCATCGGATTTAACCCCATTCCCAAAACTACCAAACATCACCTCTTCAACAGCCTAGCCTTCAAAGATAGTGGGTGGGGATCATTGGATCAAAAACTGCCGAGCCTAACTGCAAAGCCAAAGAGCAGTAGTGTCTGTCCAGCCTTGAGTCTGAGTCTAGGATCAGTGAAGTGCTGGAGAGGCCTCTAAAACAGACTTAAATCTCAGACACACTAAGAAGACAAAGggttttaattgaaaatgaaaagtctgttcCATAAGTAGTTTGTCATGTCCAGTGATTCACATGCACGGACAGTTTTAAACACAGACTagtttcaataaataattcatgtaGCCTATATGGTTTGTTCTTCGCTTCCTGAACAGTTCATTTATTCACGAATGTGCATTGTGATGACGAACAGCAGGTGGCAGAGCAGATCAGAGGGATTCAAAT
>XM_043246721.1
TTTagggttattaaaaatataaagtaattaatgattaaatatttactttcttCGTTTGGTTTTCATTTACGTGTTAAAACGCAtacctaattattattaatgttattatatttcacatcattatttatatttatttcatggtGCATcagctgctgaaaaaaatggTAAAGTAAAACTAATATGCGTTTGGTGAAAATGTTTCGTAATCTTAGTTTGAGAATCTATTTAATTACAGATCTAAAATCAAAGTTTGATTTTCATAACAAGCAGCACAGCAGCATCGAGTCGGATTTGCATTAGCGCTTTTACAGTGAAAGTAGGCCGCTGAACTTCCGCTGCTTAGCAACCAAACCTTACACAAGCAAAGAGAAGTTCGCGAGGATGTGCTCTCAGGTTTGTTTTAACAAATGAGGGACTTTGAGGCCGCTGTGGATGGAGCTCATTGTTTCAGGGTGCTGTGCTCTCACCCATGCTGCTGGGACACCGGGCGCCGCTGCCACCGAGGAATCAAACGACACACCCCAGAACGCCTGAGCAAACACGCTCTCAAAAACGAGGACTTTCCATCTCTGAGTGTAGTTGATGTCTCTGAATGGACCGGACCGTTGAATGAAAGGCCACCGTACGGTGCTGACACAGAGGCGTCTTTGAATAATGTCTCTTGCGTTTCTGTCATCAAACAGAGTAAAGACACTCGGGAGGTTAAGAGGGCAAATCTTTCCTTCCCAGACATCACGTTGCCCAGCGATAATCCAAACAGTACCATCAAGTTAAATACAGTTGACATGAGTCCTTTGGGCGGCTCTGAGTGGTCAGAGTGTCCAGTGTTTATGTGGATTCCTAACCTGCACCACGAAACTCGGTGGATCCGCCAAAACAAGTCTAAACCTCCAAACATCACTATAAAAGAGTTAGTCTGCCTTCCATCTTGTCAAACGACAAAGCCGTCCGTAGCGGCCAACCAGCGGAAGAAGTGCAACGGTCGTGAAAGGAGAGGGAAGAGAGGAATGAACTCTACACAAGAGGGCGCTGGCAGCCCGCGCTGGGTGGGCATCGGATTTAACCCCATTCCCAAAACTACCAAACATCACCTCTTCAACAGCCTAGCCTTCAAAGATAGTGGGTGGGGATCATTGGATCAAAAACTGCCGAGCCTAACTGCAAAGCCAAAGAGCAGTAGTGTCTGTCCAGCCTTGAGTCTGAGTCTAGGATCAGTGAAGTGCTGGAGAGGCCTCTAAAACAGACTTAAATCTCAGACACACTAAGAAGACAAAGggttttaattgaaaatgaaaagtctgttcCATAAGTAGTTTGTCATGTCCAGTGATTCACATGCACGGACAGTTTTAAACACAGACTagtttcaataaataattcatgtaGCCTATATGGTTTGTTCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97155 False 1010 lncRNA 0.48 6 20718940 20721810
XM_043246721.1 True 1405 mRNA 0.43 8 20719023 20723155

Neighbor

gene id symbol gene type direction distance location
ccn1l2 LOC107698087,LOC107556215,LOC107563854,LOC107678465,LOC107714581,LOC107721104 coding downstream 11744 20700023 ~ 20707196 (-)
si:dkey-90l8.3 si:dkey-90l8.3,LOC107714563,LOC107698086,LOC107556214,LOC107563853,LOC103024553,LOC108426648,LOC108264996 coding downstream 22250 20690830 ~ 20696690 (-)
bcl2l16 bcl2l16,LOC107714610,LOC107556213,LOC107698085,LOC107721090,LOC107678407 coding downstream 54411 20662169 ~ 20664529 (-)
adgrd2 LOC107721081,LOC107678382,LOC107563844,LOC107570012,LOC107714589 coding downstream 104643 20592465 ~ 20614297 (-)
chmp4bb chmp4bb,LOC107756851,LOC107691553,LOC107702881,LOC107566963,LOC107573971 coding downstream 250035 20465898 ~ 20468905 (-)
stambpb stambpb,LOC107714511,LOC107721092,LOC107678409,LOC107563848,LOC103470718 coding upstream 25284 20748439 ~ 20756847 (-)
tgoln2 NA coding upstream 34653 20757808 ~ 20762487 (-)
tcf7l1b tcf7l1,tcf7l1b,LOC107721095,LOC107556226,LOC107747791,LOC107563849,LOC107698102,LOC108265410,LOC106585616 coding upstream 48538 20771693 ~ 20822052 (-)
LOC122350675 cox5b1,LOC107698109,LOC107556219,LOC107747804,LOC108426657,LOC107602047,LOC107718706 coding upstream 193873 20917028 ~ 20919100 (-)
LOC122350417 phyhip,LOC107747796,LOC107721105,LOC107698112,LOC107556234,LOC107678475,LOC108426626 coding upstream 208795 20931950 ~ 20943305 (-)
G65704 NA non-coding downstream 108017 20610562 ~ 20610923 (-)
G65697 NA non-coding downstream 148647 20567158 ~ 20570293 (-)
G65696 nr6a1a,nr6a1,LOC107721088,LOC107698081 non-coding downstream 158969 20559631 ~ 20559971 (-)
LOC122349883 NA non-coding downstream 212967 20491849 ~ 20505973 (-)
G65682 NA non-coding downstream 254184 20464551 ~ 20464756 (-)
G65717 NA non-coding upstream 111 20723266 ~ 20725454 (-)
G65732 NA non-coding upstream 157867 20881022 ~ 20881433 (-)
G65728 dbnl non-coding upstream 163069 20886224 ~ 20892629 (-)
G65750 NA non-coding upstream 203456 20926611 ~ 20926980 (-)
G65752 NA non-coding upstream 205107 20928262 ~ 20928477 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other downstream 297644 20415065 ~ 20421296 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 584595 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 1285649 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 1516563 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1670971 19023713 ~ 19047969 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 291838 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1048313 21771468 ~ 21776620 (-)
G66090 NA other upstream 1061549 21784704 ~ 22254189 (-)
G66119 gfpt1,LOC107710818,LOC107752562,LOC107678434,LOC102792631 other upstream 1290818 22013973 ~ 22025791 (-)
G66116 gfpt1,LOC107710818,LOC107678434,LOC107562636,LOC107553119,LOC107752562,LOC108426669,LOC103362312,LOC101170101 other upstream 1305577 22028732 ~ 22031993 (-)

Expression


Co-expression Network