gfpt1 (gfpt1,LOC107678434,LOC107553119,LOC108426669,LOC107710818,LOC107752562,LOC103362312,LOC101170101,LOC107562636)


Basic Information

Item Value
gene id gfpt1
gene name gfpt1,LOC107678434,LOC107553119,LOC108426669,LOC107710818,LOC107752562,LOC103362312,LOC101170101,LOC107562636
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22243202 ~ 22265861 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU97793
CAGAACTAGGAACTAAACGGCTCTTGGCAGCAGCACCGGAGACATGTGTGGCATCTTCGCATATCTGAATTATCACGTGCCTCGCACTCGCCGTGAGATCCTCGAGGTCCTTATCAAGGGCCTGCATCGCCTGGAGTACCGCGGCTATGACTCCGCTGGTGTGGGCATCGATGGAGGAAACAGTAAGGAATGGGAAAACAACTGCAAGAACATCCACCTGATCAAGCAAACAGGAAAAGTCAAAGCGCTGGATGAGGAAATCAATAGGCAGCAGGATGTTGATCTGGATGTGGAGTTCGACGTGCACCTGGGAATCGCTCACACTCGATGGGCCACTCACGGCGTCCCCAGCCCCGTCAACAGCCACCCGCAAAGATCTGACAAGAACAACGAGTTTATTGTCATCCATAATGGAATCATCACCAACTACAAAGACTTGAAGAAGTTTCTGG
>TU97794
CAGAACTAGGAACTAAACGGCTCTTGGCAGCAGCACCGGAGACATGTGTGGCATCTTCGCATATCTGAATTATCACGTGCCTCGCACTCGCCGTGAGATCCTCGAGGTCCTTATCAAGGGCCTGCATCGCCTGGAGTACCGCGGCTATGACTCCGCTGGTGTGGGCATCGATGGAGGAAACAGTAAGGAATGGGAAAACAACTGCAAGAACATCCACCTGATCAAGCAAACAGGAAAAGTCAAAGCGCTGGATGAGGAAATCAATAGGCAGCAGGATGTTGATCTGGATGTGGAGTTCGACGTGCACCTGGGAATCGCTCACACTCGATGGGCCACTCACGGCGTCCCCAGCCCCGTCAACAGCCACCCGCAAAGATCTGACAAGAACAACGG
>XM_043247911.1
CGCCCAATAAAATACGCGGTGGGCGGGTTTTTCAATGACAGCGATTCAGAACTAGGAACTAAACGGCTCTTGGCAGCAGCACCGGAGACATGTGTGGCATCTTCGCATATCTGAATTATCACGTGCCTCGCACTCGCCGTGAGATCCTCGAGGTCCTTATCAAGGGCCTGCATCGCCTGGAGTACCGCGGCTATGACTCCGCTGGTGTGGGCATCGATGGAGGAAACAGTAAGGAATGGGAAAACAACTGCAAGAACATCCACCTGATCAAGCAAACAGGAAAAGTCAAAGCGCTGGATGAGGAAATCAATAGGCAGCAGGATGTTGATCTGGATGTGGAGTTCGACGTGCACCTGGGAATCGCTCACACTCGATGGGCCACTCACGGCGTCCCCAGCCCCGTCAACAGCCACCCGCAAAGATCTGACAAGAACAACGAGTTTATTGTCATCCATAATGGAATCATCACCAACTACAAAGACTTGAAGAAGTTTCTGGAGAGTAAAGGCTATGACTTTGAGTCTGAGACGGACACGGAGACCATCGCTAAGCTGGTGAAGTACATGTATGACAACCGGGAGAACGATGACATCACCTTCGCCACCCTGGTGGAGCAAGTCACCCAGCAACTAGAAGGAGCTTTTGCCCTGGTCTTCAAAAGTGTGCACTATCCAGGAGAGGCAGTGGGCAGCAGGAGAGGAGGTCCGTTACTGATTGGAGTTAGAAGTGACCACAAGCTTTCCACAGATCACATCCCCATCCTGTATCGCTCCTCTGGTAAAGACAAAAAGAGCTGCAATACTCTGCCCAGGATGGACGAGGACACGTGTCTGTTTCGTGAGAAAGCCGTGGAGTACTACTTTGCATCTGATGCCAGTGCTGTCATCGAGCACACCAATCGAGTCATCTTCCTCGAGGATGACGATATCGCAGCGGTGCGTGACGGGCGTCTCTCCATCCACCGGATCAAGCGGACGGCAGGAGATCACCCGGCCCGGGCCATCCAGACCCTGCAGATGGAGCTGCAGCAGATCATGAAGGgAAACTTCAGTTCCTTCATGCAGAAGGAGATCTTCGAGCAGCCAGAGTCTGTGGTCAACACCATGCGAGGAAGAGTTAACTTCGACAACAACACAGTGACCCTGGGAGGGTTGAAAGACCACATTAAAGAGATCCAAAGATGTCGTAGGCTCATCATGATTGCCTGTGGGACCAGTTACCATGCTGGAGTTGCAACTCGTCAGGTACTGGAAGAACTGACCGAACTTCCTGTCATGGTGGAGCTGGCTAGTGATTTCCTGGATCGAAACACGCCTGTCTTCCGAGATGATGTGTGCTTTTTCATCAGCCAGTCAGgagaGACGGCAGACAGCCTGTTGGCTCTGCGCTACTGTAAGAGAGGTGCCTTGACGGTGGGCATCACCAACACTGTGGGCAGCTCCATCTCCAGAGAAACAGACTGTGGTGTTCACATCAATGCTGGCCCAGAGATTGGTGTGGCTAGCACAAAGGCATACACGAGTCAGTTTGTGGCTCTCATCATGTTCGCCCTGCTGATGTGCGACGACAGAATCTCAGTGCAGCCTCGCAGACGAGAAATCATACAAGGCCTCAAAGTTCTGCCAGaTCTAATCAAGGAGGTGTTGAGCCTGGATGAGGAGATTCAGAAGTTGGCAGCAGAGCTGTATCAGCAGAAGAGCGTTCTCATCATGGGCAGAGGATACCACTACGCCACCTGCCTGGAAGGAGCTTTGAAAATTAAGGAGATCACGTACATGCATTCGGAGGGGATTTTGGCTGGCGAGCTGAAGCACGGGCCGCTGGCTCTAGTGGACAAACTCATGCCTGTCATCATGATCATCATGAGAGACCACACGTACAACAAGTGccagaatgcattgcagcaGGTCGTGGCGAGACAGGGCCGTCCGATCGTGATCTGTGATAAGGAGGACTACGAGACCATCAAAAACTCCAGCCGCACCATCAAAGTGCCTCACAGTGTGGACTGTCTGCAGGGAATCCTCAGCGTCATCCCGCTTCAGCTGCTGTCCTTCCACCTCGCTGTGCTCCGCGGATATGACGTTGATTGCCCAAGAAACCTGGCCAAGTCTGTGACTGTTGAGTAATCGCTTCCTAatcgaacacacacacacacacacacacacacactcact

Function

symbol description
gfpt1 Predicted to enable glutamine-fructose-6-phosphate transaminase (isomerizing) activity. Acts upstream of or within several processes, including melanocyte differentiation; neuromuscular junction development; and skeletal system development. Is expressed in notochord and polster. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 12 and obesity. Orthologous to human GFPT1 (glutamine--fructose-6-phosphate transaminase 1).

NR:

description
PREDICTED: glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1

GO:

id name namespace
GO:0007519 skeletal muscle tissue development biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0002063 chondrocyte development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0030246 carbohydrate binding molecular_function
GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity molecular_function

KEGG:

id description
K00820 glmS, GFPT; glutamine---fructose-6-phosphate transaminase (isomerizing)

RNA

RNA id representative length rna type GC content exon number start site end site
TU97793 False 452 TUCP 0.52 4 22261239 22265815
TU97794 False 393 TUCP 0.54 3 22261385 22265815
XM_043247911.1 True 2177 mRNA 0.52 21 22243202 22265861

Neighbor

gene id symbol gene type direction distance location
LOC122349876 NA coding downstream 81644 22159986 ~ 22161558 (-)
LOC122349886 NA coding downstream 96205 22145523 ~ 22146997 (-)
LOC122350992 LOC107756834,LOC107691567,LOC107548280,LOC107702864 coding downstream 188827 22040071 ~ 22054375 (-)
kansl3 kansl3,LOC107678435,LOC107661339,LOC107710832 coding downstream 299785 21923712 ~ 21943417 (-)
bmp1a bmp1a,LOC107710833,LOC107661342,LOC107678424,LOC108426680 coding downstream 323524 21855648 ~ 21919678 (-)
naa35 naa35,LOC107757435,LOC107752550 coding upstream 17488 22283349 ~ 22290847 (-)
ntrk2a ntrk2,ntrk2a,LOC107752549,LOC107757434,LOC107678451 coding upstream 58925 22324786 ~ 22364823 (-)
rmi1 rmi1 coding upstream 100539 22366400 ~ 22370617 (-)
rasef rasef,LOC107678388,LOC107752555,LOC107755592,LOC107562642 coding upstream 172609 22438470 ~ 22457269 (-)
LOC122349924 nfu1,LOC107664472,LOC107678441,LOC107553147,LOC107570003,LOC101170349 coding upstream 246091 22511952 ~ 22515035 (-)
LOC122350974 NA non-coding downstream 168731 22073687 ~ 22074471 (-)
G66115 NA non-coding downstream 229524 22010643 ~ 22013678 (-)
G66071 NA non-coding downstream 489587 21751768 ~ 21753615 (-)
G66046 NA non-coding downstream 598519 21571117 ~ 21644683 (-)
G66131 NA non-coding upstream 27578 22293439 ~ 22295953 (-)
G66143 NA non-coding upstream 99040 22364901 ~ 22365113 (-)
G66142 NA non-coding upstream 99415 22365276 ~ 22365682 (-)
G66147 NA non-coding upstream 111049 22376910 ~ 22378639 (-)
G66163 gkap1,LOC107562640,LOC107757429,LOC107664507,LOC107678454,LOC107553117 non-coding upstream 120221 22386082 ~ 22387783 (-)
antxr1a antxrl,antxr1a,antxr1,LOC107661337,LOC107710819,LOC107562635,LOC108265351 other downstream 133115 22075010 ~ 22110087 (-)
LOC122350973 dmtn,LOC107586118,LOC107687659,LOC107720576,LOC107553712,LOC107705088,LOC107571963,LOC107702870,LOC107723027 other downstream 174445 22060015 ~ 22068757 (-)
G66116 gfpt1,LOC107710818,LOC107678434,LOC107562636,LOC107553119,LOC107752562,LOC108426669,LOC103362312,LOC101170101 other downstream 211209 22028732 ~ 22031993 (-)
G66119 gfpt1,LOC107710818,LOC107752562,LOC107678434,LOC102792631 other downstream 217411 22013973 ~ 22025791 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other downstream 466582 21771468 ~ 21776620 (-)
LOC122349902 nfu1,LOC107678441,LOC107553147,LOC107664472,LOC107570003 other upstream 371414 22637275 ~ 22640323 (-)
LOC122350259 LOC107678445,LOC107752560,LOC101882811,LOC107553112,LOC107757078,LOC108426735,LOC107703990,LOC107757081,LOC107553140,LOC107678447,LOC107752570 other upstream 461319 22727180 ~ 22747079 (-)
G66310 NA other upstream 529761 22795622 ~ 22796362 (-)
ddx51 ddx51 other upstream 563343 22829204 ~ 22835591 (-)
tprg1l tprg1l,LOC107698845,LOC107710788,LOC107678419,LOC107748986 other upstream 660595 22926456 ~ 22931165 (-)

Expression


Co-expression Network