LOC122350000 (ddx51)


Basic Information

Item Value
gene id LOC122350000
gene name ddx51
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22532468 ~ 22540233 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU97912
GGGGAATACTGCAGAGAGTCTCGCTCCAGAGCTTTACTGGCTAAACTACAGGAGCAGGTCAAAGCCAGAGAACTGCAGAGCATCTCAAACAGAGCTGATGAAGATGGGGACCGCCAGGGTGataaagaagagaagaaaaggaaTCGGGAAGAAGCAGAGACGGAGACAGAGGGAGTTCAGCGTAAAACAAAGAAGagtaaaaaagagagaaaaactgaTATCAGTGATGAAGTTGCCAGTTCgactaaaaagaagaaaaaacagaagaCATTGTCTGCTGAAAACAAGAACACAAATAGAGcagaTGAAGAATCTGATAAAGAGAAATCTATAGAGATCACAGAAACAAGTGAAAGTGGCCTAGAGGAAAATAAGACGACTGAAGAGCCTGCGGCCAATCAGGAGCCAAAGGAAGAGAACGGCTCCTCCCAGACCACCTTCCGCATCCTGGGGGGCTTCGAGGAGAAGACTGTGCAAAAGGTTAAAAGAGTGTTGCCTCAATGGTTGGCACGGCCTGACGTCATTCAAAGAGACATTAAGAGCAACCTCATTCCCATGACTGAGGTGCCAGGCATCTGTCCCACACTGCTGAAGAAACTAGAAACCAACGGAATAAAGAGCTTCTTTCCAGTTCAAGCCGAGGTCATCCCTGCCATCCTAGAGAGCGTGAGCTCAGGGCTGCTGCTCGGCCCAGGTGGCTACAGACCCAGAGACATCTGTGTGTCTGCTCCTACAGGAAGTGGAAAAACACTGGCGTTCGTGATA
>TU97916
GGGGAATACTGCAGAGAGTCTCGCTCCAGAGCTTTACTGGCTAAACTACAGGAGCAGGTCAAAGCCAGAGAACTGCAGAGCATCTCAAACAGAGCTGATGAAGATGGGGACCGCCAGGGTGataaagaagagaagaaaaggaaTCGGGAAGAAGCAGAGACGGAGACAGAGGGAGTTCAGCGTAAAACAAAGAAGagtaaaaaagagagaaaaactgaTATCAGTGATGAAGTTGCCAGTTCgactaaaaagaagaaaaaacagaagaCATTGTCTGCTGAAAACAAGAACACAAATAGAGaTGAAGAATCTGATAAAGAGAAATCTATAGAGATCACAGAAACAAGTGAAAGTGGCCTAGAGGAAAATAAGACGACTGAAGAGCCTGCGGCCAATCAGGAGCCAAAGGAAGAGAACGGCTCCTCCCAGACCACCTTCCGCATCCTGGGGGGCTTCGAGGAGAAGACTGTGCAAAAGGTTAAAAGAGTGTTGCCTCAATGGTTGGCACGGCCTGACGTCATTCAAAGAGACATTAAGAGCAACCTCATTCCCATGACTGAGGTGCCAGGCATCTGTCCCACACTGCTGAAGAAACTAGAAACCAACGGAATAAAGAGCTTCTTTCCAGTTCAAGCCGAGGTCATCCCTGCCATCCTAGAGAGCGTGAGCTCAGGGCTGCTGCTCGGCCCAGGTGGCTACAGACCCAGAGACATCTGTGTGTCTGCTCCTACAGGAAGTGGAAAAACACTGGCGTTCGTGATA
>XM_043246176.1
GTCAACTGAACTATTCACACTACagtttatacattatatttctaaaacccgtacatagatatatataatagtttcacgatttatgactGAGTGCTTGAAATAAAGGTCCGCGTGGCGCTGACACGAGCCAGGAGTTACTATAATGGCACTGTTTACGATAAATAgGTATTTAGGGGATGAGGAGGACGGGGAATACTGCAGAGAGTCTCGCTCCAGAGCTTTACTGGCTAAACTACAGGAGCAGGTCAAAGCCAGAGAACTGCAGAGCATCTCAAACAGAGCTGATGAAGATGGGGACCGCCAGGGTGataaagaagagaagaaaaggaaTCGGGAAGAAGCAGAGACGGAGACAGAGGGAGTTCAGCGTAAAACAAAGAAGagtaaaaaagagagaaaaactgaTATCAGTGATGAAGTTGCCAGTTCgactaaaaagaagaaaaaacagaagaCATTGTCTGCTGAAAACAAGAACACAAATAGAGcagaTGAAGAATCTGATAAAGAGAAATCTATAGAGATCACAGAAACAAGTGAAAGTGGCCTAGAGGAAAATAAGACGACTGAAGAGCCTGCGGCCAATCAGGAGCCAAAGGAAGAGAACGGCTCCTCCCAGACCACCTTCCGCATCCTGGGGGGCTTCGAGGAGAAGACTGTGCAAAAGGTTAAAAGAGTGTTGCCTCAATGGTTGGCACGGCCTGACGTCATTCAAAGAGACATTAAGAGCAACCTCATTCCCATGACTGAGGTGCCAGGCATCTGTCCCACACTGCTGAAGAAACTAGAAACCAACGGAATAAAGAGCTTCTTTCCAGTTCAAGCCGAGGTCATCCCTGCCATCCTAGAGAGCGTGAGCTCAGGGCTGCTGCTCGGCCCAGGTGGCTACAGACCCAGAGACATCTGTGTGTCTGCTCCTACAGGAAGTGGAAAAACACTGGCGTTCGTGATACCCGTTGTACAGGCGCTGTCCAAGCGCGCGTGGTGCGTGAGGTCCGTCGCCGCTGTACTTCCAACCAAGGAGTTAGCGCAACAGGTGTCAAAGGTGTTTAGCACATACACCGAGGGCACCGGTCTTAAGGTGGTGATGATCACAGGCCAAAAATCCTTTCCTGCAGAGCAAACAGCGCTTTCTGAAATCAGAGGAGGTGTTAGTCACAGTTCGGCTGACATTGTGGTGGCCACACCAGGCCGGCTGGTGGATCAcatcaacaaaaacagcaacttCAGTCTACAATCTCTACGATTCCTGATTATTGACGAGGCGGACAGGATGATTGACAGCATGCATCAGTCGTGGCTCTCTCAGGTGACCAAAGCAGTGTACAGAAGCCCAGGCGACACACAGACTTCTGTCTTCAGGAGAACCCTGCCCGGACCGATCACAGTGGCAAGtttgAGTCCTCCACAGATTCCTCTACAGAAGCTGCTGTTTTCCGCCACTCTCACCCAAAACCCTGAGAAGCTgcagctgctggatctgcaCCAGCCTCGACTCTTCAGTTCCACACACAGCGGTACGGAGGCCAGCGCACAGAGCCAGGACGTTTTTAACTTCCCTCAGGGTCTCGCAGAGTATTATGTTCCCTGCTCCCTAAGCAATAAACCGCTCATCATCATTCACTTCCTGCTGTGGCTCAAGTTCAGGCCTGTTTTGTGCTTCACGAACTCCAGAGAAGCGGCTCACCGACTGTATTTGCTCGTGAAGCTGTTCGGCGGTGTGGAAGTAGCCGAGTTTTCCTCTAAACTGAGCCCGAGTGAACGacaaaaaacactgaaggaCTTCGAACAAGGAAAGATCCCGCTGTTAATAAGCACAGACGCCGCTGCCAGAGGTATTGATATCGCCGGCGTAAAATGTGTCATTAATTACGATGCTCCTCAGTACATCCGAACATACATTCACAGGGTGGGCAGAACAGCGAGAGCAGGGAAGGGCGGCTCAGCCTTCACCTTCCTTTTAAAGTTGCAGGAGACGTGTTTCCTGAAGATGGTGAGGGATGCGGGCAGTCCTGGCATAAAGAAGCACATTATAAAAGATGGAATTCTTAGAAGCATGGAGCCCCGCTATGAGCAAACGCTGGCTGAGCTCGGCGAAGTTGTGAAGgaGGAAAAGGCGAGGAAGCGATTCTGAGGTGGAACTGACCTGAGCTGTAcacctgtttgtttttcagtgtttctcaAAAAATGTATGCCTggactgtaataaaataagttgcaaatgtttttttttaataaaatgtacaaatcc

Function

symbol description
ddx51 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human DDX51 (DEAD-box helicase 51).

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX51

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14807 DDX51, DBP6; ATP-dependent RNA helicase DDX51/DBP6

RNA

RNA id representative length rna type GC content exon number start site end site
TU97912 False 765 lncRNA 0.48 4 22533063 22534817
TU97916 False 762 lncRNA 0.48 4 22533063 22534817
XM_043246176.1 True 2251 mRNA 0.49 17 22532468 22540233

Neighbor

gene id symbol gene type direction distance location
opn7d opn7d,LOC107570009,LOC107664480,LOC107755598,LOC107678369,LOC108426644,LOC107752573 coding upstream 38504 22459937 ~ 22493964 (+)
frmd3 frmd3,LOC107678471 coding upstream 94097 22395147 ~ 22438371 (+)
gkap1 gkap1,LOC107664507,LOC107678454,LOC107553117 coding upstream 138466 22385203 ~ 22394002 (+)
c8h9orf64 zgc:136564,cunh9orf64,c5h9orf64,LOC107757431,LOC107664574,LOC107553132 coding upstream 149724 22379403 ~ 22382744 (+)
hnrnpk hnrnpk,LOC107757432,LOC107752553,LOC107678442 coding upstream 154022 22370722 ~ 22378446 (+)
LOC122349889 LOC107748971,LOC107710781,LOC107678464,LOC107698851,LOC107595755 coding downstream 1565 22541798 ~ 22549058 (+)
LOC122351043 LOC107757082,LOC107703982,LOC107757083,LOC107757080,LOC107575601,LOC107678397,LOC107752574 coding downstream 14634 22554867 ~ 22558195 (+)
sypb sypb,LOC107553146,LOC107664463,LOC107755600,LOC107678440,LOC108426646 coding downstream 107615 22647848 ~ 22659247 (+)
plp2b plp2,LOC107570007,LOC107755602,LOC107553143,LOC107752558,LOC107678458 coding downstream 120916 22661149 ~ 22673282 (+)
prickle3 LOC107752556,LOC107678453,LOC107755595,LOC107703993 coding downstream 133656 22673889 ~ 22709558 (+)
G66189 NA non-coding upstream 718 22530253 ~ 22531750 (+)
G66183 NA non-coding upstream 19223 22512179 ~ 22513245 (+)
G66024 NA non-coding upstream 243621 22288308 ~ 22288847 (+)
G66022 NA non-coding upstream 247036 22283734 ~ 22285432 (+)
G65998 NA non-coding upstream 289175 22010649 ~ 22243293 (+)
G66261 NA non-coding downstream 259406 22799639 ~ 22800154 (+)
LOC122350789 NA non-coding downstream 369414 22909647 ~ 22911382 (+)
LOC122350915 NA non-coding downstream 689810 23230043 ~ 23231024 (+)
LOC122350913 NA non-coding downstream 691331 23231564 ~ 23239812 (+)
G66344 NA non-coding downstream 697744 23237977 ~ 23238253 (+)
G66011 naa35,LOC107752550,LOC107757435 other upstream 411672 22119913 ~ 22120796 (+)
G66010 naa35,LOC107757435,LOC107752550 other upstream 414634 22116283 ~ 22117834 (+)
LOC122350768 LOC107710831,LOC107553156,LOC107562655,LOC107678394 other upstream 567905 21963465 ~ 21964563 (+)
G65995 NA other upstream 570623 21949888 ~ 21961845 (+)
G65992 LOC107553157,LOC107661339 other upstream 591544 21939146 ~ 21940924 (+)
mfsd2al2 NA other downstream 175146 22715379 ~ 22723908 (+)
fkbp1aa fkbp1aa,fkb1b,fkbp1a,LOC107574256,LOC107553142,LOC103030299,LOC107752559,LOC100705189 other downstream 184349 22724582 ~ 22727444 (+)
wrap73 LOC107748967,LOC107698846,LOC107595759,LOC107678416,LOC107602469,LOC107710786 other downstream 359203 22899436 ~ 22925768 (+)
mfn2 mfn2,LOC107748965,LOC107602467,LOC107710790,LOC107678429,LOC107698839,LOC107595787 other downstream 433762 22973995 ~ 22987162 (+)
prdm16 prdm16,si:ch211-263k4.2 other downstream 514383 23054616 ~ 23401562 (+)

Expression


Co-expression Network