prdm16 (prdm16,si:ch211-263k4.2)


Basic Information

Item Value
gene id prdm16
gene name prdm16,si:ch211-263k4.2
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23054616 ~ 23401562 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU98168
GGAAAGAGATAAGTGATCTAAAGGAGACACGATAGGACAAaaagtgatgatgatgaatacATTGGAAAGTTTTTTGGCCCTGACGAGGGTGTCAGATTGAATGGCCTGTGCGCATGTGCGAAGGTGTCCAAACTGACAATGCTCGTGAGATGAAGATagcgctgctgctgcttctgagcTCAAGGAGGACGCGAGGAATCTACAAGCCGACAAGATGAGATCCAAGGCGAGGGCGAGAAAACTGGCCAAAAATGACAGCGAGGCAGTAGACAGCATGTACGACACAGAGCCCAATCTCGTGACCGGCGAGAGCGCAGAAGAGGAGACAGAAGACAGCATCATGTCCCCCATCGCGGTGGGGCCCACGTCCCCTCAGACCTGCAATGAGGACTTCACTCCTAAAGAGGGCTCACCCTACGAGGTGCCCGTCTACATTCCCGACGATATTCCCATACCTGCAGACCTGGAGCTCCGTGAGTCGTCAGTTCCAGGAGCCGGCCTAGGAATCTGGGCCAAAGTCAAAATTCACATGGGAGAACGCTTCGGACCGTACAACGGACTGCAGAGCGCCACGGTGAAGGAGACCACTTATGGATGGGAGCAAATGCTGAATGATCATGAAACGTCGTCTCAAGACAGCTGTATTAAAAAGGT
>XM_043247681.1
GGAGGAGGAGGGAAAGAGATAAGTGATCTAAAGGAGACACGATAGGACAAaaagtgatgatgatgaatacATTGGAAAGTTTTTTGGCCCTGACGAGGGTGTCAGATTGAATGGCCTGTGCGCATGTGCGAAGGTGTCCAAACTGACAATGCTCGTGAGATGAAGATagcgctgctgctgcttctgagcTCAAGGAGGACGCGAGGAATCTACAAGCCGACAAGATGAGATCCAAGGCGAGGGCGAGAAAACTGGCCAAAAATGACAGCGAGGCAGTAGACAGCATGTACGACACAGAGCCCAATCTCGTGACCGGCGAGAGCGCAGAAGAGGAGACAGAAGACAGCATCATGTCCCCCATCGCGGTGGGGCCCACGTCCCCTCAGACCTGCAATGAGGACTTCACTCCTAAAGAGGGCTCACCCTACGAGGTGCCCGTCTACATTCCCGACGATATTCCCATACCTGCAGACCTGGAGCTCCGTGAGTCGTCAGTTCCAGGAGCCGGCCTAGGAATCTGGGCCAAAGTCAAAATTCACATGGGAGAACGCTTCGGACCGTACAACGGACTGCAGAGCGCCACGGTGAAGGAGACCACTTATGGATGGGAGCAAATGCTGAATGATCATGAAACGTCGTCTCAAGACAGCTGTATTAAAAAGGTGATGGACAACATGGGTAATGTGAAGTTCTGTCTGGATGGGCCTCTGGAGGCCAGCGGGAGCTGGCTCAAATATGTGCGCACTGCCCCGTCCCACGAAGAGCACAACCTGGCCATATGCCACATCAGCGAAGATCAGatCTATTATAAAGCTATTAGAGATATTGAAATAGGGGAGGAGTTACTGGTTTACATGAAGGACGGAGTTTTCCCAGGCTCAATGGCACCGAACCTGGAAGATGAGCAGATGTACCGCTGTGAACACTGTGATGAGCTCTTCACTTCAAAGCTGGAGTTACGGCGGCATCAGAAATactcctgcagcagcagcaactCTATCTTTGACTCGCTAAGCGAAGACTTCAAACAGGAGCGCGAAGACAGCGATGAGCCGGTGCACGAGTGCAAAGACTGTGAAAAAATCTTCCCTAGCGAGTACAGTCTGGGGCAGCATATGATCGTAcacacagaggagagagagtaTAAGTGTGACCAGTGCCCCAAAGCTTTCAACTGGAAATCCAACCTCATTCGCCATCAGATGTCACATGACAGTGGCAAGCGCTTCGAGTGTGAAAACTGTGATAAGGTGTTCACAGACCCCAGCAACCTCCAGCGCCACATCCGCTCTCAGCACGTCGGTGCCCGAGCCCACACCTGCCCTGAGTGTGGCAAGACCTTTGCCACCTCCTCGGGCCTCAAGCAGCACAAGCACATACACAGCAGTGTCAAGCCTTTCATCTGTGAGGTGTGTCACAAATCGTATACCCAGTTCTCTAACCTGTGCCGTCACAAACGGATGCATGCAGACTGCCGCACCCAGATCAAGTGTAAAGACTGTGGGCAAATGTTCAGCACTACCTCCTCCCTCAACAAGCATCGGCGCTTTTGCGAGGGCAAGAACCATTATAATCCCGGAGGCATATTCACACCGGGCATACCAATGACATCCAGTCACATTTTAGGCAAGTCCAAGTCTCATCCTGGCTTGAACCATAGTGGACTTGGCTTCGGGGACTACTTCCCATCCAGGCCACATCATGCAGGTTTGCCCTTTTCCCCAGCACCCCCTGCATTCCCAGCCCTATCCCATGGCTTCCCAGGTATCTTTCCCCCATCGCTATATCCTAGACCGCCATTGTTACCTCCTAGTCCGCTGCTCAAGAGTCCAATTAGTAACAGTCAAGACGGGAAGCTGATTCCTCTTGATGCTCCTACCCTTTCTGCAGTCACATCCATGAACAACAGCAATGGCAATGTAGGGAGCAGTCTCAGCAGCCAGTCAGAGGAGAATCGAGAATCCAAACTGGACTTGTCATTTCACGACAACAAGAATAAAGTGAAGATGAACGACATGTCTGATGGTAGTGACTTGGAAGATGTCAACACGTCTAGCGGCACAGATCTAGACACCACCACTGGCACGGTGTCTGGCTCGGACCTAGAAAGTGAGGCAGAAAGCGAACGGGAGAAGAGCAGGAGGAAGCCAGTACAGGAGAGCAAGCAGGACGAAGTGAGCAGCAGTTCGGTATCTGTCTCCAGTTCAGGGAACCTCCCTAGTGAGCGTCCTTTCCTGTCCTCCCAGCATTCCTTTTTCCCACCGCCAGAGGAGCAAGCACTTCCACCTTCTGGGGCCACCACTGACTCCATCAAAGCCATTGCCTCCATTGCAGAAAAGTATTTTGGCCCAGGTTTCATGGGCTTGCAGGAGAAGAAAATGGGCTCCTTAAACTACCATTCCATGTTCCCTTTCCAGTTTCTGCCCAACTTTCCACATTCCTTATACCCGTTCACAGACAGAGCACTCAACCCTGGCATGTTCTTCAAACCTGAGCCTAAGTCCCCTCGTGAGCACATACAGAAATTACCTACAGCCACTGGTGCGGATTCACCCTTTGACCTAACCACCAAACCCAAGGAGGTCAAACCTCTTCCTCCACCCCCCAGCAAGCCAGTCTTGCCATCAAATACCCCCTTGGCCCCTGGCGAGGAACAACCTCTGGACCTCAGCATAGGCAGTCGAAGCCGAGCTAACCAGAATGGTGGCACGCATGAACAGCGCAAGAATCATGCCTTTGGCATAAACTGCAAAGCAGCTAAAGATGAACACCCAGCACTAACTCAGTCCCAGAACTTGCACCAGCCCCAGATGCCTCAACCACAAGTATCCCTTCCCCAGCCACCTCCTCCCCAGCAGCAGCCGTCGCTCCACTACGCCAAGCCCTCGCCGTTCTTCATGGACCCCATCTACAGCAGGGTGGAGAAGAGGAAGCTAATAGACCCAGTAGGAGCTCTAAAGGAGAAGTACCTGAGGCCGGCACCACTACTCTTTCATCCTCAGGTGTCTGCGATGGAAAACATGACTGAGAAGTTGGAAAGCTTTAGCGCTCTGAAACTGGATGCTCCCAATTCCCTCCAGCACTCCTCACACCACCTTTTTAACTTCCGCTCCCCGCCTCCCTCTCTTTCCGATGCTATCTTACGCAAAGGCAAGGAGCGATACACCTGCAGGTACTGTGGGAAAATCTTTCCCAGGTCAGCTAATCTTACAAGGCACTTACGAACACACACAGGAGAACAACCCTACAGATGTAAATACTGTGACCGTTCATTCAGCATCTCCTCCAACCTCCAGCGACATGTCCGTAACATTCACAACAAGGAAAAGCCTTTCAAGTGCCACCTTTGCAATCGCTGCTTCGGTCAACAGACCAATCTGGACCGCCACTTAAAGAAACATGAACATGAGAATATTCCAGTGAGTCAGCAGTCTGGGATCCTCTCGAATTTAGGAACAAATATTTCCTCACCGAACTCTGAGTCTGACAATCATGCACTTTTGGATGAAAAGGAGGACTCGTATTTCTCAGAGATTAGGAACTTCATCTCCAATAGTGAGCTGAACCAGGCCTGTAGCTCCTCTGAGAAAAGGTCAGAGCTGACGGAGGAGGAACAGCCTCAGAGTCATGCTCACACCACCTCAAAActggaggaggaagatgaggagATGGAGGGAGATGATGAAGACGAGGAAGGCTCGTTGACAGAAAAGTCCCAGGACGAGACGGCTTCCCCCGCCACTATGGTGCAGGGCACCTACGACGAGGACGAGGAGCCGACCCCTCTCCCCATGTCCTACGAACACACTCGCAGGTGTATTGAGGAGGATGCAGGCCTATTAGATCTGGAACCTCTGGCTGGTTTCCCCAAAGGCCTGGAGTTCCATAAGGCTGGCGAGGAGCCCtatgacattaaagacatttttagcaCCTCGGTAGAGTCGGAGGCGCTGAAAGAAACACTTTTCAGACAGGCTAAAACACAGGCTTATGCAATGatgctctctctgtctgagaACACCAATCTGCATTCATCCTCCCAGAACTCCTTGGATGCCTGGCTCAACATGGGAGGAGGGCCGTCGGAGACGAGCTCCTTTCACCCCCTCAACAACATCTGAGCACACCTACAAGACGAACCGGAGATGGAGGGAGAAAGGAGGAGAGGGCAAGAGACCACCGTGAAGATGCGTCAAAAAGAGCTCGTGAAGACCAGCAATGCCACCACTACGCGTGCAAGGAGGAGAACGTACTGTTGAGTGAAACAGACACCGACGGGAGAGTTTTAACCCAATCCCAGCCACTAAAGTAACGTTCCCTCCTCACCGGCCGATTCAAGAGGGAGCCTTGCATTCGACTGACTCTCAGATCACCTCATTTTCGATGATATGCATTTCGTAGAGACTGCTCTCTGGGGGTTTGGACGTGGAGAAGCGGACAGGGTAGTCGAGCGTTTCTTCAACTGGAGATTCGAACCGTTTCTACACAGCGTTCCATTCTCACGTTGATTTTCTACAGCACTGTACCAAGGTTTCCTTTCTGTTAACTCAAAAGCCCAAGTCTTACAGTAGATCGTTGCGGTAGACATCAACATTGATTTCCGATGGCAATAGAAGCACTTAAGTCTAGCCCACAACTAGCATGCTAACCCTCCCAACCGAAGGCTGAATGCAGTTTGTAAGCCACTGTCTCAAAACGTAAATGCTGGAAGTCACTGGGAAACCTTTGAGATTCGTGTTCGGCTGTGTGATCCTGTCTCGTCCCCAGCCGGACATCCGTACGATAAATCACGCAGCACGCTTGTATAGCATCACGGTCattgtaattattgttgttatggTGAGTATCGTAGCTGTTTAGTCCCAActgaaagtttgtttttaaaagttaaattattcTCCAGTGGGGCAATTGGaaaacttttctctttttcttgcattcagtaatatgatttttttttgatttgttcttCGGTAAACagtattgtttctttttaagcaCATCTGTgcttaaatgttaatataattctTAGTGAAGGACCAAATTTGTACGATATTGTTGTATGATGTACAAACTAAGTTAACCATTGGTAGCAGAGAGTGTTGTGTGCCAAATAAtcccctttttttctttgacaatCATTTTCCTGAGTGGTCGCCTCCactgtgtagtttttttttggtctcctCTTTCTACTTTTTTCCCCCCGTCGTTGCTACTTACGTTGATGAGTGTCtgtcttgtatttattttgattttagttttttttttttttcctgattaatgaaaaatgaagaaaaaaacgaCTTACCCACTCGTTCGAAGGaattaaattactgaaatatcCTGAAAATTCAGAATTGCTCAAAAGCTCTTCGTTGCCAAAATCTGAATTGCGAAAGAATGCGTTTTTATTACGAGCACATAATCGTGAAGTCTGGTTTGTGACGCCGTCTGTTCAACCATCTAGAAAAGTAGGCACTGCgtgatttaagaaaaataaaaaacgaaaaaaaaaaactttttgactAAATTATCAGGTAACTCAATAGAGGGGCATTATATGTTGACGTATACGTTTTAAGCATCTTCGTAAAGCAAATGGGTCGACAGCGTATCTCTGGGTTCAAATCGCACGTTTTTTAATGTTCCTTTCACTGGGAAGAGCCATATACATCAGCCAGTCAAATTCTACATGATTCAGATACTTCATATTATGCATCCCAGAAGAGACAACGTAAGCAAGAGGGCTATCAAATGGTGAGCAGCTACACGAGAGCGTAGAGAGACACCCAGGTCCTCATCCAACTCCAGAACTGTGAAGCCAGCGAATGAATCGTAAAAAGCAGCTGAACGCATATCATGAATGTGTAGAGTAGATTTAACATGTAGGTAAACGAGTCAAAACCGAACGTCTGTTTGGTCGGGAACTCGTACTCTCCTCGATTCTTGTTGGACGTTTAAAGACTCTCCGAAATCAGCACTTAATTCAAACGCTTACCCCCGTCTGCCCGGTTCACACTTCACGTCTTAGTACTGATATCGATAAAACTTTCTAAGCAAGGCTGGTTTTAACAAGCACTTTAACTCTTGGGTCAAACAGGCAATTTATAGCAGAGGCTTTCAAATAAAGCACGTTCAAGCGGCGTCGGAAGAGCAGTGAAATGCTGTGTTTTCACCGCGAACGCACACCAAGCGAGGCGGACTTTCACAGGGACTCCAGCTGCGTAAAAACGAATTTCATTTACGCTACCAGGTGGCGCACTGTGTGATCTTACCTATTTCCCCCGCTGCATACCTTCGAGTGAAATGCCTGTTTGACGCGCACGATTGCTGGGGATGTGATGGGATTATGAGTACGGAGAAGTCGTGTCACATACTACTGTACTGAGCGAGCGCTGTAGGTGGAGAAATTGACCCACACTTAAAATCATCACGGAGAAAACGGTCCAAAAATGAACAATGCAGACGTCCTCGGGCCCACTGTTACGTCGCAAACGAACGTACCATTTCAAAAACCACAGATAACGTGgtttctctaaaaaaaacaaaatgtatagtatttcaaaaaaaaaaaacaaaaaagacacagATATGtctgaaaattaattttaaacatggGTTTGAAAATAGATGGTGCTTGTTTCATTTGGATATGAGTTGTATATTGCTTctgttatgtttattaaaactattgTGCATGACTTGTGTTTTAGAGGTCATAATGGTGTCCATTTGTGAAACGTgtatcttaaattaaaaagaaaaaaaaaataatgaacttGTAGATGCACTTATTGTACATGTGGTTAGGTTAGTAGGTTTGACTTTAAGTCCTGTTTACTGCCTTAAATACTATGGGCAGATGGTTATTGAACTGAACAATATGCTTGTGGGAgagaaataatgacaaaatttaagGATTGTAGAATAATACTGAAAATTCTGAAATTCTGAAGTTCTTTTTGATGCTTGTGATTACTGAAGATGTACTTTAGAGCAATTTCATGGAAAACACAAGATTCTGATGTTAATTCTGTAGAATAGATATGTATACCAAATGTAATCTTTCCAATGCTATGAAGAATTTATACATGAAATTGATATGCAATAAAAACCTGTGTGCTTTTTATA

Function

symbol description
prdm16 Predicted to enable metal ion binding activity. Acts upstream of or within several processes, including cardiac muscle cell proliferation; embryonic cranial skeleton morphogenesis; and hematopoietic stem cell differentiation. Is expressed in several structures, including hindbrain neural rod; nervous system; pectoral fin bud; pronephric duct; and stomodeum. Orthologous to human PRDM16 (PR/SET domain 16).

NR:

description
PR domain zinc finger protein 16-like isoform X1

GO:

id name namespace
GO:0061337 cardiac conduction biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22410 PRDM16; [histone H3]-lysine9 N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU98168 False 654 TUCP 0.52 3 23054626 23151947
XM_043247681.1 True 7134 mRNA 0.47 18 23054616 23401562

Neighbor

gene id symbol gene type direction distance location
plod1a plod1a,plod1,LOC107698842,LOC107678430,LOC107748983 coding upstream 85643 22956869 ~ 22968973 (+)
LOC122350040 NA coding upstream 108462 22944210 ~ 22946154 (+)
fam110a LOC107755603,LOC107703992,LOC107678459,LOC107570008,LOC107553114,LOC107752568 coding upstream 340501 22710095 ~ 22714115 (+)
prickle3 LOC107752556,LOC107678453,LOC107755595,LOC107703993 coding upstream 345058 22673889 ~ 22709558 (+)
plp2b plp2,LOC107570007,LOC107755602,LOC107553143,LOC107752558,LOC107678458 coding upstream 381334 22661149 ~ 22673282 (+)
nppal zgc:195023,LOC107595800,LOC107748995 coding downstream 21110 23422672 ~ 23423662 (+)
nppb LOC107687134,LOC107748982,LOC107595789 coding downstream 24346 23425908 ~ 23427204 (+)
nppa nppa,LOC107691053,LOC107602452,LOC107595801,LOC107687143 coding downstream 27353 23428915 ~ 23430926 (+)
mthfr mthfr,LOC107602465,LOC107691055,LOC107687111 coding downstream 45629 23447191 ~ 23456783 (+)
plch2a LOC107687112,LOC107595766,LOC107691057,LOC107748961,LOC107602463 coding downstream 81333 23482895 ~ 23583377 (+)
LOC122350789 NA non-coding upstream 143234 22909647 ~ 22911382 (+)
G66261 NA non-coding upstream 254462 22799639 ~ 22800154 (+)
G66189 NA non-coding upstream 522866 22530253 ~ 22531750 (+)
G66183 NA non-coding upstream 541371 22512179 ~ 22513245 (+)
G66024 NA non-coding upstream 765769 22288308 ~ 22288847 (+)
G66350 NA non-coding downstream 31247 23432809 ~ 23433745 (+)
G66351 NA non-coding downstream 32556 23434118 ~ 23435033 (+)
G66416 NA non-coding downstream 213654 23615216 ~ 23616682 (+)
G66418 LOC107748960,LOC107687117,LOC107691060,LOC107595771,LOC107602461,LOC107755278 non-coding downstream 219365 23620927 ~ 23623471 (+)
LOC122350145 NA non-coding downstream 274872 23676434 ~ 23681832 (+)
mfn2 mfn2,LOC107748965,LOC107602467,LOC107710790,LOC107678429,LOC107698839,LOC107595787 other upstream 67454 22973995 ~ 22987162 (+)
wrap73 LOC107748967,LOC107698846,LOC107595759,LOC107678416,LOC107602469,LOC107710786 other upstream 128848 22899436 ~ 22925768 (+)
fkbp1aa fkbp1aa,fkb1b,fkbp1a,LOC107574256,LOC107553142,LOC103030299,LOC107752559,LOC100705189 other upstream 327172 22724582 ~ 22727444 (+)
mfsd2al2 NA other upstream 330708 22715379 ~ 22723908 (+)
LOC122350000 ddx51 other upstream 514383 22532468 ~ 22540233 (+)
LOC122350936 LOC107710771,LOC106926566,LOC107691064 other downstream 2151 23403713 ~ 23410561 (+)
ndufa7 ndufa7,LOC107748992,LOC107755274 other downstream 230788 23632350 ~ 23634065 (+)
acot7 acot7,LOC107754737,LOC107687121,LOC107693425 other downstream 351006 23752568 ~ 23804049 (+)

Expression


Co-expression Network