fnbp1a (fnbp1a,fnbp1,LOC107757295)


Basic Information

Item Value
gene id fnbp1a
gene name fnbp1a,fnbp1,LOC107757295
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5618549 ~ 5638757 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245988.1
GTGGATTTGGCGCTGCGTGCTGCTCTGCGCGTGGCCGTCTAGCTCTGTCTGAGGCGCGTGAGTGCACGGGTACATAGGCATTATCTTCATTTCCAGTTTCATCGGCAAATTACAGAATGCGGAGGTGAAAACGGACGGACTCGCCGATCGAGGCACGAACCCTTGACGGTATATGCCGGTACCACACCAGTTGGTGTTATTTTTCTTATCTGAAAGCCGGTTCTGAGCGAGAATCACGCATGCATTCAAACAGAGGATTATCGCGGAGGAACTGCCTTGAAACCATGAGCTGCAGTTGGGGGACGGAGCTGTGGGATCAGTTTGATAATTTGGAGAAACACACTCAGTGGGGCATTGAGTTTTTGGAACGCTACACCAAGTTTGTGAAGGAGCGGTCTGAAATTGAACTGAGCTATGCTAAACAGATCAGGAATCTGTCCAAGAAGTATCAGCTCAAGAAGAACTctaaagaggaggaggaatTCAAGTATACCACATGTAGAGCGTTTCTAATGACTTTAAATGAGCTGAACGACTACGCGGGTCAACACGAGGTCATCGCCGAAAACCTGTCCACTCAGATAATCGCAGAGTTGAGCCGCTACACTCAAGAACTGAAGGCTGAACGCAAATCGCATTTCCACGATGGCCGCAGAGCTCAACAACACATTGAGAATTCCTGGAAGCAGCTGGAATCGaGTAAAAGAAGATTCGAGCGAGACTGTAAGGAAGCGGATCGCGCTCAGCATTACTTTGACAAGATGGACGCCGACATTAACGTGACTAAAGCAGATGTGGAAAAGGCGAAACAGCAAGCTCAGATGAGACATCAGATAGCAGAGGACAGTAAAAACGAGTACCTGACCTACCTGCAGAAGTTCAACAAGGACCAACATGAGCACTACTACACGCTTATACCGCATATCTTTCAGAGGATACAGGAGATGGAGGAGAGGCGGGTGGGCCGAGTGAGGGAGAGCATGCGGGTGTACACCGAGGTCGAGCGTAAAGTATTGCCCATCGTCAGCAAGTGTCTAGACGGCATGACCAAGGCAGCTGAATCCATCGAGCCTAAAATGGACAGTAAGCAAGTTGTAGAATCGTACAAGTCGGGCTTTGAGCCGCCGGGTGATGTGGAGTTTGAGGACTACAGCGTGTCGATGAAGAGGGCAGTGTCGGAATCGAGCTTCCTGAACGCTCGTGGAGAGAGCAGACGCCGGAGCAGAAGCAAACTGTGGCCTTTACTCAAGAGAAATAAGCTTATGTCTTTGTTAGCGTCGCCCGACAGCCCCCTCCCCTCCCCACCCCCGTCCCCGGACGGCCTCCCCAACGGCCCCCAGTCCCCGCAGCAGCCCAAGGAGCCCCTCAGCCAGCGCCTCAACGACTTCATGGGCACCAAACACAAAATGCACTGCCTGCGGAGCCTGAAACGCGGGCTTTCTCTAAAGCTGGGAACAGGCCAGGAGGACTACAGTCATCTGCCTCCTGAGCAGAGGAGGAAAAAACTGCAAGCCAAGCTCAATGACATTAACAAGGACGTCCAGAAAGAGATGGATCAGAGGGACGCCCTGACTAAAATGaaagatgtttacattaagaATCCTCACTTGGGGGATCCAGACAGTATAGATCCACGGTTAGAAGAAATCACACAAAGCTTGGAAAAATTGCAGCTTGAGGCGCATAAATTTGAGggCTGGTTGATGGAGGTAGAGAGGAAGTTGCTTGAAAAGGGATCCGAGTCTCAGAGAAGACAGAGCAGTCATTTTGACTCGCAGGGCAACACTCCTCTTACTAACAACTACGGTCAAAACCGAGAGAGTCCGGATGGCAGCTACACGGAAGACCCCAGCACAGAGACCACGATGCAGTTCAAATCTCGCAGTACCGAGTTTGATGACGAATTTGACGACGAGGAGCCTTTACCCACCATCGGAACATGCAAAGCACTTTATCCGTTTGAAGGTCAGAACGAAGGTACCATATCCATGGCAGAGAGCGAGATGCTGTACGTAATCGAGGAAGATAAGGGTGACGGTTGGACCCGTGTCCGTAGAAACGAGGATGAGGAAGGATACGTGCCCACATCCTACATCAAACTCTTTTTGGACACGAATGCCAAAGGTGCTATGACATACATTTAATCCCACTTCACTGAACACCCGGAAAGCGTTTTTAGTGAACGCAGTTTAACTAGACATCGTGAAAATGTTCTCAATGAACAGAGGAAGCAGACAGCAGCGTACTTCCTGTTTTTACAAGTTCAAGTTGCCATTGTCATTTCTCCCTTAGACCTTATCAGTGTTAAAGAAGTTCTGCATCCACGAGGGTACAGTCAGTTAGGCAATAAAGACAGCTGCTCTGTAATTTTGATATATCTGATGGAAACGGCTGCTTTACCAACATATCACGTTCATATTTAGCATTATAGCTTGGAATTATGGTGGTTTTCTGCTATAACCAAGACGTGTAGATACTCTTGCTCATATTTTTAACGATCTACAAGCAATCAAATACTTTTAGATTAAGAATGAAATGAttagaaaatatcaaaaagcTAATATTCCGAAAACCTTCTGGCAATAAAAAGCAATTACTTACTAATATTTTGACCTTCAAACTACAGAATAAGTAGCAATCTTGGTgtttttaattagaataattttttaagaCGTCGAAATGTCCGACTCGAGAGAATCTTTCGCATGAGAGACGGAATAGAGTATTTTCTCAGGTACGTTTACTTTGGTGTACATCCTTGTACCTCAAAAAATCCTGAACATACGcgggattttatttttttttttcttcttttttatttcgcTTTCCCCCAACGGCAAAATCGCATCCGATTTCAACGCAAATCATTAAATGCGAAGAGCTGAAGTAATTAATGCATGCCTCCGTGAGACTTCTTGCTAGctttgcagaagaaaaaaagaagatcgactttagaagtaaaaaaaatatactcgTGAACCCGTAGTTAACGCGATGCCTTTCAGTGTAGTGAGCGTTGAAGCAATAATTCAAAAGATGCATGATATTAGTACACTGACCAGCATGGAAAACTTGAAGTTAAATAAGGATTTTCCAGGTGGTGGTGGCGGTGTGTATTAGCAGTGCTTACAGCAGGAATACCGCTCTATGTGCATGCCGTAAAAGCAGATAGGCTATTTATTGCTGCGTCATTTGTCCGTAGCTTTATCAGCAGCTGTTAAATACGCTTGATATTGTCGCGAGCTAAATACCTGCAGAATTTTCGTATGGTTTTATACCgtctttaattctttaattcaCGTTTCATCCGCGCTCCGACGTCGAGCTTCGCGGTTTACcgaacgttttttttgttttgttttttttttaacccattgCTGTCTGTGAATCAACGGTTGTACAGGAGTTCTTGTGCAGCATCTCTAACATGTcttgtgtgatttttttctttttttttttttatttgtttcttttttttttgctttttgtttctgTTCCTTT

Function

symbol description
fnbp1a Predicted to act upstream of or within endocytosis and signal transduction. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human FNBP1 (formin binding protein 1).
fnbp1 Enables identical protein binding activity. Predicted to be involved in endocytosis and signal transduction. Located in intracellular membrane-bounded organelle and plasma membrane.

NR:

description
PREDICTED: formin-binding protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245988.1 True 3501 mRNA 0.45 17 5618549 5638757

Neighbor

gene id symbol gene type direction distance location
unc45b unc45b coding downstream 143755 5466567 ~ 5474794 (-)
LOC122350623 LOC107725301,LOC107664996,LOC107674340,LOC107598970,LOC107734523 coding downstream 153826 5458354 ~ 5464723 (-)
tasor2 LOC107664996,LOC107725301,LOC107598970,LOC107566806 coding downstream 160369 5446068 ~ 5458180 (-)
plekha2 si:ch211-204d2.4,LOC107599050,LOC107725306,LOC107734508,LOC107566813,LOC107683853 coding downstream 174969 5437353 ~ 5443580 (-)
asb13b asb13b,asb13,LOC107725307,LOC107599049,LOC107664994,LOC107734516,LOC106561665 coding downstream 181719 5431949 ~ 5436830 (-)
anapc7 anapc7,LOC107674331,LOC107664992 coding upstream 48513 5687270 ~ 5692999 (-)
rapgef1a rapgef1a,LOC107598978,LOC107725290,LOC107757300,LOC107664972,LOC107674295 coding upstream 55175 5693932 ~ 5717191 (-)
med27 med27,LOC107557205,LOC107665006,LOC107757301,LOC107725311 coding upstream 96764 5735521 ~ 5782271 (-)
phf19 phf19,LOC107599052,LOC107757290,LOC107674297,LOC107557185 coding upstream 424511 6063268 ~ 6091611 (-)
traf1 traf1,LOC107599053,LOC107664983,LOC107709033,LOC107674383,LOC107557184 coding upstream 455294 6094051 ~ 6105276 (-)
G61507 NA non-coding downstream 33829 5582915 ~ 5584720 (-)
G61502 NA non-coding downstream 44656 5570404 ~ 5573893 (-)
G61476 NA non-coding downstream 252201 5323112 ~ 5366348 (-)
G61478 NA non-coding downstream 266092 5336987 ~ 5352457 (-)
G61459 NA non-coding downstream 352511 5143199 ~ 5266038 (-)
G61525 atp2a2,atp2a2a,LOC107674294,LOC107757297,LOC107557188 non-coding upstream 34884 5673641 ~ 5675178 (-)
G61526 atp2a2,LOC105014188,LOC108444117,LOC107397196,LOC107725304,LOC106585469,LOC106514585 non-coding upstream 37233 5675990 ~ 5676748 (-)
G61519 NA non-coding upstream 46403 5685160 ~ 5687209 (-)
G61538 NA non-coding upstream 101318 5740075 ~ 5740438 (-)
G61550 endog non-coding upstream 207206 5845963 ~ 5967122 (-)
G61513 NA other downstream 885 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 8977 5605172 ~ 5609572 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other downstream 107606 5476213 ~ 5510943 (-)
nr1h5 nr1h5,LOC107653410,LOC107598964,LOC107725330,LOC107674374,LOC107734534,LOC107570978 other downstream 267270 5341394 ~ 5351279 (-)
LOC122349940 fnbp1,fnbp1a,LOC107720911,LOC107675683,LOC107661630,LOC107757295,LOC107674371 other downstream 411027 5195752 ~ 5207522 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other upstream 281204 5919961 ~ 5961106 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other upstream 784985 6423742 ~ 6442982 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other upstream 1175714 6814471 ~ 6816747 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other upstream 1236592 6875349 ~ 7056429 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 1452693 7091450 ~ 7102993 (-)

Expression


Co-expression Network