lgi3 (lgi3,LOC107698096,LOC107678470,LOC107559454,LOC107553170,LOC108426696)


Basic Information

Item Value
gene id lgi3
gene name lgi3,LOC107698096,LOC107678470,LOC107559454,LOC107553170,LOC108426696
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 21313704 ~ 21325204 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245991.1
gattaataatgataatgttgTTATCATCatgttatttcttttacatAATTCTAATTAGCTgacaattaatttataataatactaacataataaatattacgattattattattttacactgcAGCACTAATATTTCAAAAGCTTAACCATTTTAAATCCTCAAATTTGAAAGATGGTAAAAGGCCGCACTTCTGCCCATAAAAATATGCCAATAACGTAAACCTAATGCACACTGCCTTCCCAAACGTTTCACCCTTATACAGTTATTGCGTACAGTTATTGATAACTGCAGCGTGCCATGCACGATTACCATGTCgtctctcttttatttattttgctttacattGGATGTAATGAATTGCAGCTACCCTTTTGAAAGGACGCTGTTCCAAAAGCTGCTTTTTCAAGCACAAGACTTCTATAAGATGTGACGCTTGAGCATAAACAAGTGTTTTCTAGTACATTATTTAGTATAACCTTCACTGACCGGTCCGTCGCCCCCCGCCTCTTTATCTTGGTTCGGCCTCCCCATCCCGCTACTTTCTCTGCTGTGTTCTCTGCTGCAGTTTAAGTGTTAGCGTGTGCGATTGTTAATAATTCAGTGTCAGCGTTGCAGCGCTCTGGTCTGAGACCGTGTGCTGATACGCTCCTGCAGTCTGTGCTCTGACAGCTGCAccactgagagaaagagagagagagagagagagagagactgcagGGAACACTGAGGAAATCAAATACACCCTCAGACACGCACCCAGGGAGCACCAGTCACTGCCCGCTCCCTCACACCCTGGATCTTCTGCTCTCGCAGTTTCCTCAGTGAGCGCCCAGGATCGTTTCTCGCTCGAGCTGGAGAAGAGAAGGTGGAAGATGGTGGAAGCGAGGCCCGGATGGACCCTGCGATGGCCGGGTTGGCGGCTGTCGGTCTGCGTGCTGCTTCTCTGCGTGTTCGGGACGGCGGCGGGCCGCAGGGCTCCCAAAACCCCTCGATGTCCAGCCACCTGCTCCTGTACCAAAGACAGTGCCTTCTGCGTGGACACCAAAGCCATCCCCAAGAGTTTCCCGCCGGGAATCATCTCCCTGACTATGGTGAACGCTGCTTTCACAGAGATTCCTGAAGGAGCTTTTTCCCACATGCACCTTCTGCAGTTCTTACTGTTGAACTCAAACACATTCTCAGTGATTTCTGATAATGCTTTTGCCGGTCTTGGACATCTGCAGTACCTATTTATTGAGAATAACGACATCCAAGCCCTGTCAAAGCATACATTCAGAGGACTGAAGTCTCTAACACATCTGTCTCTATCCAACAACAACCTGCAGGTTCTTCCCAGAGATCTCTTCAAGCACCTGGACATCCTCACGGACCTAGACCTGCGAGGGAACTCGTTCCGTTGTGACTGTAAGATCAAATGGCTGGTGGACTGGATGGAGAAGACCAACACCTCGGTTCCCGCCATATACTGCGCCAGTCCTTTTGAGTTCCAGGGTCGACGCATCCATGACCTCACACCCCGTGACTTCAACTGCATTAGCGCGGATTTTGCTGTATACGAGACATACTCCTTCCAGTCGCTGTCTGTGGAGTCGTACGAGTTTAACGACGACCAGTACGCCGTTTTCGCTCAGCCCAACACTGGGATCTGCACCGTGTTCATTTGGGATCACGTGAACATGCTATTCAAGACACATTACAACATCACATCTCGTTCTGCGGTGTATTGTAAACCCGTGGTTATCAACAACACTCTCTACATGGTTGTGGCTCAGCTTTTTGGAGGATCCCACATTTACAAATGGGAGGAAGGTCCATTGCGCTTCGTCAAAATCCAGGACATCGATACCACCCGTGTGCGTAAGCCCAACTTCGTCGAGACGTTCCAGATTGAAGGAGACTGGTATTTCGCGGTAGTGGACAGCTCTAAAGCCGGCTCCACCAGCCTATACCGCTGGAACAGCAACGGCTTTTACTCCCACCAGTCCCTCCATCCCTGGCACAGGGACACTCACATCGACTTCCTGGAGGTGGACGGCAAGCCTCGCCTCATCCTCTCCAGCTCCTCGCAGCCCCCCGTGGTGTATCAGTGGAACCGCAGCCAGCGCCAGTTCGCCTACCACTCCCAGATCACCGATTCGGGCGATGTGCAGATGGTCAAGCACTTCTGGGTCCGGAAAGCGCTTTATCTCTGCCTCACGCGCTTCATAGGAGACTCGAAGATCCTGCGCTGGGACAACCAGCGCTTCGTAGAGATTCAAACCCTGCCTTCCCGGGGCTCGATGGCCGTGTACCCGTTCAGCGTCGGAGTGAGGCAGTACCTCCTGCTCGGCAGCGATTACTCCTTCTCTCGGATCTACCTGTGGGACGAGCTCACTCAGAGATTCCAGCCCTTCCAGGAGCTCAACATGCTCGCGCCTCGAGGCTTCAGCCTGCTTTCTGTGGACAATAAGGACATTCTGTTAGCGGCCAGTTTTAAAGGAAAGACCATGGCCTACCAGCATCTAGTGGTGGATCTCAGCGCCAAATAGGCAGCTGGAGAGGTTTTTGTGTAAGTGCGTAAATGCCAAGAAGTGCAAAACTCACACACTTTTCTACATCTGCATTCACACACGGATTGGTTCTATCTTTGCTAAATACTCATACATTAGTGACTGTGTAAGCCATCATCAACTCAATAAACgtcttaaaatcttaaaaccAATTAGCCATGTTTAGGTCTTTAAGTAGCCTAAATCAGTGCTGTccaatgattaattgcatccaaaatttttatttttattttttttttacataatatatgtgtgcactGTCTATACTGTCTCTATTTAAGTAtacgtaaaaaaacaacaacaataaatcaatataatcACATCAATATAGTTcaaatttacatataaatatataaagtagacacacatattatgtaaacaaaacgttttatttagatgtgattaatcagttTACAGCACTAGCCTAAATAACCATATGCATTGCAATTATTAAGTTTTGTTGATAGGATGTACGTTGTTCAGCAGTTTCATTTCCAAAAGGTGAATGATAGTTTTAGACAGATGTTGCTCCCTGATTCGTGTATCATCATAACAGGAATATAAACACTTcaggaaaaacagcaaaacttCATGTCCGTTACTCGGTTGAGCTTGACTGTTAAGGCTTTGCTTTAGGGATTTTCTACGAAGATTATTCTCTGAAAGCGGACAACACTTACTAACCGACAGGTCATTATAACCCATCTGCTGTCATCAGCATGCATTGCAGTAAATGACTGTGGTGGAAATGTGATTTATGTcacaatataaagtaaaaaaaaataaaaatatttttttcttcccgTCTATAA
>XM_043245992.1
agaagcggatagaaggacgacaaattaccaatcctgtcaaactctatcttttcaaatcctcaccccttcatcatggaacccacacgaagaagttcgtatgatgcaagttttaagttgaaggccaTCGATCTCGTTATACAAGAAGAAAACCGCGCTGCCGCTCGGAAGCTTAGCGTCAATGAGTCTGTGGtgagacgctggaggaggccgcgggaagagcaaaactttttaaatagagcggatgcggcttatatgcagTTTCCTCAGTGAGCGCCCAGGATCGTTTCTCGCTCGAGCTGGAGAAGAGAAGGTGGAAGATGGTGGAAGCGAGGCCCGGATGGACCCTGCGATGGCCGGGTTGGCGGCTGTCGGTCTGCGTGCTGCTTCTCTGCGTGTTCGGGACGGCGGCGGGCCGCAGGGCTCCCAAAACCCCTCGATGTCCAGCCACCTGCTCCTGTACCAAAGACAGTGCCTTCTGCGTGGACACCAAAGCCATCCCCAAGAGTTTCCCGCCGGGAATCATCTCCCTGACTATGGTGAACGCTGCTTTCACAGAGATTCCTGAAGGAGCTTTTTCCCACATGCACCTTCTGCAGTTCTTACTGTTGAACTCAAACACATTCTCAGTGATTTCTGATAATGCTTTTGCCGGTCTTGGACATCTGCAGTACCTATTTATTGAGAATAACGACATCCAAGCCCTGTCAAAGCATACATTCAGAGGACTGAAGTCTCTAACACATCTGTCTCTATCCAACAACAACCTGCAGGTTCTTCCCAGAGATCTCTTCAAGCACCTGGACATCCTCACGGACCTAGACCTGCGAGGGAACTCGTTCCGTTGTGACTGTAAGATCAAATGGCTGGTGGACTGGATGGAGAAGACCAACACCTCGGTTCCCGCCATATACTGCGCCAGTCCTTTTGAGTTCCAGGGTCGACGCATCCATGACCTCACACCCCGTGACTTCAACTGCATTAGCGCGGATTTTGCTGTATACGAGACATACTCCTTCCAGTCGCTGTCTGTGGAGTCGTACGAGTTTAACGACGACCAGTACGCCGTTTTCGCTCAGCCCAACACTGGGATCTGCACCGTGTTCATTTGGGATCACGTGAACATGCTATTCAAGACACATTACAACATCACATCTCGTTCTGCGGTGTATTGTAAACCCGTGGTTATCAACAACACTCTCTACATGGTTGTGGCTCAGCTTTTTGGAGGATCCCACATTTACAAATGGGAGGAAGGTCCATTGCGCTTCGTCAAAATCCAGGACATCGATACCACCCGTGTGCGTAAGCCCAACTTCGTCGAGACGTTCCAGATTGAAGGAGACTGGTATTTCGCGGTAGTGGACAGCTCTAAAGCCGGCTCCACCAGCCTATACCGCTGGAACAGCAACGGCTTTTACTCCCACCAGTCCCTCCATCCCTGGCACAGGGACACTCACATCGACTTCCTGGAGGTGGACGGCAAGCCTCGCCTCATCCTCTCCAGCTCCTCGCAGCCCCCCGTGGTGTATCAGTGGAACCGCAGCCAGCGCCAGTTCGCCTACCACTCCCAGATCACCGATTCGGGCGATGTGCAGATGGTCAAGCACTTCTGGGTCCGGAAAGCGCTTTATCTCTGCCTCACGCGCTTCATAGGAGACTCGAAGATCCTGCGCTGGGACAACCAGCGCTTCGTAGAGATTCAAACCCTGCCTTCCCGGGGCTCGATGGCCGTGTACCCGTTCAGCGTCGGAGTGAGGCAGTACCTCCTGCTCGGCAGCGATTACTCCTTCTCTCGGATCTACCTGTGGGACGAGCTCACTCAGAGATTCCAGCCCTTCCAGGAGCTCAACATGCTCGCGCCTCGAGGCTTCAGCCTGCTTTCTGTGGACAATAAGGACATTCTGTTAGCGGCCAGTTTTAAAGGAAAGACCATGGCCTACCAGCATCTAGTGGTGGATCTCAGCGCCAAATAGGCAGCTGGAGAGGTTTTTGTGTAAGTGCGTAAATGCCAAGAAGTGCAAAACTCACACACTTTTCTACATCTGCATTCACACACGGATTGGTTCTATCTTTGCTAAATACTCATACATTAGTGACTGTGTAAGCCATCATCAACTCAATAAACgtcttaaaatcttaaaaccAATTAGCCATGTTTAGGTCTTTAAGTAGCCTAAATCAGTGCTGTccaatgattaattgcatccaaaatttttatttttattttttttttacataatatatgtgtgcactGTCTATACTGTCTCTATTTAAGTAtacgtaaaaaaacaacaacaataaatcaatataatcACATCAATATAGTTcaaatttacatataaatatataaagtagacacacatattatgtaaacaaaacgttttatttagatgtgattaatcagttTACAGCACTAGCCTAAATAACCATATGCATTGCAATTATTAAGTTTTGTTGATAGGATGTACGTTGTTCAGCAGTTTCATTTCCAAAAGGTGAATGATAGTTTTAGACAGATGTTGCTCCCTGATTCGTGTATCATCATAACAGGAATATAAACACTTcaggaaaaacagcaaaacttCATGTCCGTTACTCGGTTGAGCTTGACTGTTAAGGCTTTGCTTTAGGGATTTTCTACGAAGATTATTCTCTGAAAGCGGACAACACTTACTAACCGACAGGTCATTATAACCCATCTGCTGTCATCAGCATGCATTGCAGTAAATGACTGTGGTGGAAATGTGATTTATGTcacaatataaagtaaaaaaaaataaaaatatttttttcttcccgTCTATAA

Function

symbol description
lgi3 Predicted to be involved in regulation of exocytosis. Predicted to be located in extracellular region. Predicted to be active in synaptic vesicle. Is expressed in head; hindbrain; and spinal cord. Orthologous to human LGI3 (leucine rich repeat LGI family member 3).

NR:

description
leucine-rich repeat LGI family member 3-like isoform X1

GO: NA

KEGG:

id description
K19999 LGI3; leucine-rich repeat LGI family member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245991.1 True 3362 mRNA 0.46 9 21315082 21325204
XM_043245992.1 False 2806 mRNA 0.47 10 21313704 21325204

Neighbor

gene id symbol gene type direction distance location
fgfr1a fgfr1a,LOC107710851,LOC107698118,LOC107553171,LOC107678428,LOC107721100 coding upstream 7925 21270648 ~ 21305779 (+)
kctd9a kctd9a,kctd9,LOC107721077,LOC107678460,LOC107559451,LOC107698117,LOC107710853,LOC107553135 coding upstream 111836 21195587 ~ 21201868 (+)
npy8br npy8br,LOC107553136,LOC107698094,LOC107678390,LOC107710829,LOC107721072,LOC107563168,LOC105902741 coding upstream 138169 21158957 ~ 21175535 (+)
tbx16 LOC107698093,LOC107747799,LOC107556237,LOC107563178,LOC107678363,LOC107721106 coding upstream 196172 21107725 ~ 21117532 (+)
cabin1 cabin1,LOC107698076,LOC107721099,LOC107747802,LOC107556211 coding upstream 207762 21036815 ~ 21105942 (+)
LOC122351127 NA coding downstream 1142 21326346 ~ 21326464 (+)
LOC122351136 NA coding downstream 3482 21328686 ~ 21328804 (+)
LOC122351138 NA coding downstream 5838 21331042 ~ 21331160 (+)
chmp7 chmp7,LOC107710849,LOC107698119,LOC107559457,LOC107678414,LOC107553169 coding downstream 12063 21337267 ~ 21344907 (+)
entpd4 entpd4,LOC107698120,LOC107710847,LOC107678413,LOC107747713 coding downstream 20170 21345374 ~ 21355724 (+)
G65769 NA non-coding upstream 287866 21025397 ~ 21025838 (+)
G65768 NA non-coding upstream 294168 21019292 ~ 21019536 (+)
G65754 NA non-coding upstream 370325 20939422 ~ 20943379 (+)
LOC122350852 NA non-coding upstream 525364 20785366 ~ 20788340 (+)
G65552 NA non-coding upstream 554460 20725202 ~ 20759244 (+)
G65913 LOC107710826,LOC107665200,LOC107553133,LOC107575786 non-coding downstream 169608 21494812 ~ 21495538 (+)
G65914 LOC107710826,LOC107665200,LOC107553133,LOC107575786 non-coding downstream 171222 21496426 ~ 21509076 (+)
G65944 NA non-coding downstream 310917 21636121 ~ 21698404 (+)
G65951 NA non-coding downstream 405370 21730574 ~ 21731140 (+)
G65953 NA non-coding downstream 409558 21734762 ~ 21735247 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other upstream 109358 21202448 ~ 21204346 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other upstream 341664 20958600 ~ 20972040 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other upstream 881872 20423281 ~ 20431832 (+)
timm17b timm17b,LOC107722912 other upstream 1174340 20135119 ~ 20139364 (+)
rfk rfk,LOC107740987,LOC107723557 other upstream 1280097 20030034 ~ 20033607 (+)
slc25a37 slc25a37,LOC107710846,LOC107747712,LOC107559458,LOC107678377 other downstream 34033 21359237 ~ 21374625 (+)
LOC122350761 rhobtb2,LOC107553166,LOC107678456,LOC107718938,LOC107665202,LOC107710844 other downstream 144786 21469990 ~ 21538986 (+)
b2ml LOC107562648,LOC107710837,LOC107665198,LOC107728367 other downstream 426558 21751762 ~ 21754720 (+)
G65992 LOC107553157,LOC107661339 other downstream 613942 21939146 ~ 21940924 (+)
G65995 NA other downstream 624684 21949888 ~ 21961845 (+)

Expression


Co-expression Network