LOC122349884 (LOC107741000,LOC107683891,LOC107702830,LOC107723804,LOC107565119,LOC107576819)


Basic Information

Item Value
gene id LOC122349884
gene name LOC107741000,LOC107683891,LOC107702830,LOC107723804,LOC107565119,LOC107576819
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19942409 ~ 19950122 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246007.1
TCAGCCAGGGCAACTAGTCAAACAGGCTTTTGTGCTTGTGCTCTCAGAAGTACTTGGACTATAAAGCGCGAGTGACACAGTTCGGTTTTCAGTGCATTTATCACCTTGAACATCAGGGCCATTTCATGAAGCAAAGACAAACCAGCAATGAAGCACCAACGCTTGTGTGGAAGTCGATGTCTGGGTCCGATGACTTTCAGTGTGACAGGCCGCTCGGTGACCCTCAACCAAGAAGGACAACTGGCGTCCAGAGACACCTCGTCCTTTATGAACGGTTTGGCGTTCCTCAGCCGCACGGTAAAGGTGGACGAAAAGCTGTGTATATGCATTGAGGATCGCACCTCGTTGTGGGATGGAGCTCTCCGTGTGGGCTTCACCAACATCTGCCCAGGGAGAAGGAGTTTACCGCCTGCCTCAATACCAGACCTCAGGGACACACGGGGATACTGTGTCGTGCCAGTGCCTGAGGACTTGTGTAGGTGTGGTGTACAGCTTCAGTTCTGGATAAACTATGCTGGCATGGTTATTGTTCAAGAGATAGGAGGGGAGAAGTATTACCTCAAAGCAGAAGAGCTGAACCTAAACGATCCGCTGTGGGCTTTCATTGATCTGTACGGGAGCACAAGCGCCGTGCGACTTCTGAGATCGAGAAGGGGCAGTCGAACATCATGTCCGGTTTGTCCTGTGGACTGTACATTTAGCATCAACTTGCCAGCCAGAGCGGTTGAGCGAAGAACATCAGAAGAAGAGCATAGCTATAACCATAGAACAGAAACCAGAAAGCTCCAGAAAACATCATCTTTCTGGAAAGTGGGTCTCTTCGTTGTACAGTATGCCAATCAGACGACCATCCCAAGCCCCCGAGAAGGTGCAAAACTCACAAGAGCTGGTTTAGGTGTACCTGTTCAGGAGTCACGAGGTTTAAATCTACAATGGACTTGGCAAGAGCTGAATCAGTTCATTTGCTCCAGATATCCTTTGGTTAACCTGGACGTGACTGGTTTCCATTTCGCGAAGGCTGATAAGCATGGACGACTCTGCAGATTACATGCAAACactgtgaaaaaaatgaaagaggaGCTGGCTGACAACATACTTTATATAGTTCCTCTGACAGACATTGTTCTAAATGAGatgATCACGTACACATTACCACCAGTCATGAATGCAAATCCTTTCACACAATCACGTCCTCCTCAACCCGTTCCTGCACAACAGAGGCACCGGTTGACTTCAGCCAGCAGCCTTTCAGATTCAAGCCTAAACTCTTCAATGGAGGACATGGACTTTAGTTCTCTGCTCAGAGAGTTCCAGCACATGCATCTCAGCGCCAGCGAGCACGTTTCAGTAATGGTTTCTCGTAACAAGGTCGTGCAGAATGCTAAAGAATTGGTTTCCAACTCTAATTTCCCTTGGACCCAAATCCCTCTCGTGACATTTGTTGGCGAGGAAGCCCTCGACTGTGGAGGTCCACGGAGAGAGTTTTTCAGAATCTTGATGAAGGAGGTGCAGAGCTCGCTGGGCGTCTTTGAGGGGCAGCCCGGACACTTGTTCTTCACCTATGACCAGATGGCCTTGGAGGAACACAAGTATGAGTTGGCGGGGAAGCTGATTGCGTGGTCTGTGGCTCATGGCGGCCCAGGACTCAAGTCTCTTGACCCATGCCTGTACCAGCTGATGTGCACCCAGGAATGTTCTCTGGTAAACTTTGACTGGCACCTAATACCAGATGCTGACATTCAGGACAAACTCCAAAAGATTTCATCTTGTAAAACGGCAGCAGATCTCCAGAAGCTGCAGACAGAGCAGGGGGATTGGATCTGTGATTGTGGTTTCCCTGGAATATACAGACGTGAAATTTCCGTTCAAAATGTGCCAAAGATTTATTCCTTTGCAGTTCGACACTACATATATCTACGAACATCGAATATGGTTCATCAGTTCACAAAGGGACTGAACGCTTATGGACAGTTCTGGGATATGGTAAGAACTCACTGGATTGAGTTTTTGCCCATCTTTACCAACATGCATGAACCCCTTTCCCGAAGCACATTTAGAGACCTGTTCCAAATCCAATGGAGTAAATCAGGGACCGAGAAGAGAAAGGCTGAGGAAAAGACTATACGCTACTGGGAACTGGTACTTAAGATGATCGAAGataaaaaaacagaagctcCTCAAAACAAGTTGCAATTTGAGGAAGTTTTAGCTTTCATAACTGGAGCGGATGAAGTCCCACCACTTGGTTTCTCCCAGAAGCCCAGCATTAACTTCTACCAACCAGAGCAGCGCGGATGCCGTCTACCGTACGCCAACACGTGCATCATGGGATTGTTCCTGCCGAGGGTTGTAACAGATGAAGAGGAACTTTACAGAATGCTCCTCAGATCAATCAGAGACTCAGCTGTTTTTGGGAGAACATGAATGTATATAATTCTTTATCGCACACAGTCACAtccataattatttatattcacaagctttatatcattatttatttcagcacttaaaaaaaaaagcactcatGCACTTACTATGTACTTTTGACATGAATATGTTTTGCAATCTACGCCAGATCATATACATATCTATGTGCCAGgtaatcttttttatttgtaaaaaaaaacgtacatattattatttttttattttttcataccgCTGTCAGCCACGTCTTGAATAAACTGTTGTTTGATTTGGTTGAGGA
>XM_043246008.1
AACAACTGCAAGTCTGTCTTCGGCAGCCAGGGCAACTAGTCAAACAGGCTTTTGTGCTTGTGCTCTCAGAAGTACTTGGACTATAAAGCGCGAGTGACACAGTTCGGTTTTCAGTGCATTTATCACCTTGAACATCAGGGCCATTTCATGAAGCAAAGACAAACCAGCAATGAAGCACCAACGCTTGTGTGGAAGTCGATGTCTGGGTCCGATGACTTTCAGTGTGACAGGCCGCTCGGTGACCCTCAACCAAGAAGGACAACTGGCGTCCAGAGACACCTCGTCCTTTATGAACGGTTTGGCGTTCCTCAGCCGCACGGTAAAGGTGGACGAAAAGCTGTGTATATGCATTGAGGATCGCACCTCGTTGTGGGATGGAGCTCTCCGTGTGGGCTTCACCAACATCTGCCCAGGGAGAAGGAGTTTACCGCCTGCCTCAATACCAGACCTCAGGGACACACGGGGATACTGTGTCGTGCCAGTGCCTGAGGACTTGTGTAGGTGTGGTGTACAGCTTCAGTTCTGGATAAACTATGCTGGCATGGTTATTGTTCAAGAGATAGGAGGGGAGAAGTATTACCTCAAAGCAGAAGAGCTGAACCTAAACGATCCGCTGTGGGCTTTCATTGATCTGTACGGGAGCACAAGCGCCGTGCGACTTCTGAGATCGAGAAGGGGCAGTCGAACATCATGTCCGGTTTGTCCTGTGGACTGTACATTTAGCATCAACTTGCCAGCCAGAGCGGTTGAGCGAAGAACATCAGAAGAAGAGCATAGCTATAACCATAGAACAGAAACCAGAAAGCTCCAGAAAACATCATCTTTCTGGAAAGTGGGTCTCTTCGTTGTACAGTATGCCAATCAGACGACCATCCCAAGCCCCCGAGAAGGTGCAAAACTCACAAGAGCTGGTTTAGGTGTACCTGTTCAGGAGTCACGAGGTTTAAATCTACAATGGACTTGGCAAGAGCTGAATCAGTTCATTTGCTCCAGATATCCTTTGGTTAACCTGGACGTGACTGGTTTCCATTTCGCGAAGGCTGATAAGCATGGACGACTCTGCAGATTACATGCAAACactgtgaaaaaaatgaaagaggaGCTGGCTGACAACATACTTTATATAGTTCCTCTGACAGACATTGTTCTAAATGAGatgATCACGTACACATTACCACCAGTCATGAATGCAAATCCTTTCACACAATCACGTCCTCCTCAACCCGTTCCTGCACAACAGAGGCACCGGTTGACTTCAGCCAGCAGCCTTTCAGATTCAAGCCTAAACTCTTCAATGGAGGACATGGACTTTAGTTCTCTGCTCAGAGAGTTCCAGCACATGCATCTCAGCGCCAGCGAGCACGTTTCAGTAATGGTTTCTCGTAACAAGGTCGTGCAGAATGCTAAAGAATTGGTTTCCAACTCTAATTTCCCTTGGACCCAAATCCCTCTCGTGACATTTGTTGGCGAGGAAGCCCTCGACTGTGGAGGTCCACGGAGAGAGTTTTTCAGAATCTTGATGAAGGAGGTGCAGAGCTCGCTGGGCGTCTTTGAGGGGCAGCCCGGACACTTGTTCTTCACCTATGACCAGATGGCCTTGGAGGAACACAAGTATGAGTTGGCGGGGAAGCTGATTGCGTGGTCTGTGGCTCATGGCGGCCCAGGACTCAAGTCTCTTGACCCATGCCTGTACCAGCTGATGTGCACCCAGGAATGTTCTCTGGTAAACTTTGACTGGCACCTAATACCAGATGCTGACATTCAGGACAAACTCCAAAAGATTTCATCTTGTAAAACGGCAGCAGATCTCCAGAAGCTGCAGACAGAGCAGGGGGATTGGATCTGTGATTGTGGTTTCCCTGGAATATACAGACGTGAAATTTCCGTTCAAAATGTGCCAAAGATTTATTCCTTTGCAGTTCGACACTACATATATCTACGAACATCGAATATGGTTCATCAGTTCACAAAGGGACTGAACGCTTATGGACAGTTCTGGGATATGGTAAGAACTCACTGGATTGAGTTTTTGCCCATCTTTACCAACATGCATGAACCCCTTTCCCGAAGCACATTTAGAGACCTGTTCCAAATCCAATGGAGTAAATCAGGGACCGAGAAGAGAAAGGCTGAGGAAAAGACTATACGCTACTGGGAACTGGTACTTAAGATGATCGAAGataaaaaaacagaagctcCTCAAAACAAGTTGCAATTTGAGGAAGTTTTAGCTTTCATAACTGGAGCGGATGAAGTCCCACCACTTGGTTTCTCCCAGAAGCCCAGCATTAACTTCTACCAACCAGAGCAGCGCGGATGCCGTCTACCGTACGCCAACACGTGCATCATGGGATTGTTCCTGCCGAGGGTTGTAACAGATGAAGAGGAACTTTACAGAATGCTCCTCAGATCAATCAGAGACTCAGCTGTTTTTGGGAGAACATGAATGTATATAATTCTTTATCGCACACAGTCACAtccataattatttatattcacaagctttatatcattatttatttcagcacttaaaaaaaaaagcactcatGCACTTACTATGTACTTTTGACATGAATATGTTTTGCAATCTACGCCAGATCATATACATATCTATGTGCCAGgtaatcttttttatttgtaaaaaaaaacgtacatattattatttttttattttttcataccgCTGTCAGCCACGTCTTGAATAAACTGTTGTTTGATTTGGTTGAGGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107741000

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246007.1 False 2707 mRNA 0.46 11 19942409 19947062
XM_043246008.1 True 2729 mRNA 0.46 12 19942409 19950122

Neighbor

gene id symbol gene type direction distance location
LOC122350116 LOC107683905,LOC107565118,LOC107740999,LOC107548257,LOC107726396,LOC107702843 coding downstream 2792 19934426 ~ 19939617 (-)
sorbs3 LOC107683878,LOC107565106,LOC107723884,LOC107548264,LOC107702851 coding downstream 8931 19890650 ~ 19933478 (-)
pdlim2 pdlim2,LOC107740981,LOC107724143,LOC107702839,LOC107683893,LOC103022934,LOC108265771 coding downstream 52831 19838262 ~ 19889578 (-)
adgra2 adgra2,LOC107683879,LOC107702827,LOC107724218,LOC107740993 coding downstream 113382 19770779 ~ 19829027 (-)
rab11fip1a rab11fip1,rab11fip1a,LOC107740979,LOC107565115,LOC107724309 coding downstream 172265 19750839 ~ 19770144 (-)
inpp5l inpp5l,LOC107683877,LOC107565107,LOC107702838,LOC107723704,LOC107740985,LOC107548265 coding upstream 6935 19957057 ~ 19977571 (-)
LOC122350616 LOC107740984,LOC107683875,LOC108426719,LOC106585610 coding upstream 30662 19980784 ~ 20002113 (-)
foxb2 LOC107683901,LOC107548258,LOC107565132,LOC107726218,LOC107726129,LOC107702842 coding upstream 60300 20010422 ~ 20013017 (-)
pcsk5b pcsk5b,LOC107723238,LOC107702857,LOC107691579,LOC107548272,LOC107740995 coding upstream 85253 20035375 ~ 20080535 (-)
ubap2b LOC107691576,LOC107740989,LOC107565112 coding upstream 134214 20084336 ~ 20099630 (-)
LOC122349935 NA non-coding downstream 197759 19708097 ~ 19744650 (-)
G65244 NA non-coding downstream 533369 19406755 ~ 19409040 (-)
G65201 NA non-coding downstream 674219 19100929 ~ 19268190 (-)
G65199 NA non-coding downstream 675304 19099533 ~ 19267105 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding upstream 153215 20103337 ~ 20104000 (-)
LOC122350956 NA non-coding upstream 186481 20136603 ~ 20140200 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding upstream 215934 20166056 ~ 20166372 (-)
LOC122350542 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 non-coding upstream 331460 20281582 ~ 20284840 (-)
G65682 NA non-coding upstream 514429 20464551 ~ 20464756 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 509118 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 740032 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 894440 19023713 ~ 19047969 (-)
G65033 NA other downstream 1382075 18559667 ~ 18560334 (-)
tbc1d10aa tbc1d10aa,LOC107657331,LOC107712481,LOC107550973,LOC107753095,LOC107703173,LOC107554420 other downstream 1540471 18390663 ~ 18401938 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other upstream 167885 20118007 ~ 20134345 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 464943 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 768818 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 1064871 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1821346 21771468 ~ 21776620 (-)

Expression


Co-expression Network