cxxc1a (cxxc1a,LOC107701818,LOC107743112,LOC107727409,LOC107674299,LOC107577056)


Basic Information

Item Value
gene id cxxc1a
gene name cxxc1a,LOC107701818,LOC107743112,LOC107727409,LOC107674299,LOC107577056
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4007588 ~ 4012823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246017.1
GAAGAAGAGACGTAGCAGTGGAAGCGGAAGTTAATGTTGTTGTGCAGTGTTCCGCTTTGTAAACAAAAGgagtgaaatattaaataaattcactgCAAACCTGTTTAGTTCACCATGCTTATGACAGCCTGTTAGTTTTTGTGCTCAGATGTTTTGAATGACTGTGGtggcatttctttcttttggacAGTAACCGGGCAAATCTGTCATGGACAGTGAAATGTCAGACGTGGAGCAACCTCCTGGACCGGAGAGGAGTCTGAACCGGAGCAACGCACGTGTTTATTGCGTTTGTCGCAAACCGGACATCAACTGCTTTATGATTGGCTGTGACAGCTGCAATGAGTGGTTTCATGGGGACTGCATTAATATATCAGAGAAGATGGCCAAAACCATCCGTGTTTGGTATTGTCAAAAGTGTCGgaGTAAAGATGACTCCTTGGAGATCAAATTCCGCCCCAAGAAAAGCAGAGACAAAGAATCGGAGGCAGACTGCACTGATAACCAGCCAGACACACCGGATTTCAAGTCGGATGGACGGCGTGGGTCACGGATTAAGCGCTCAGCTCGCATGTGTGGAGAATGTGAACCCTGCATGCGCACGGAGGACTGTGGACTGTGTGACTTCTGTAAAGACATGAAGAAGTTCGGCGGCCCGAATAAGATCAGGCAGAAGTGTCGGCTGAGACAGTGTGAAgtgcgtgctaggaaaatgttgcGGGTGAAGGATGAGGAGTGCTCTATGTCTAGGGGCAGAGATTATCAAGATGGCCCTCTGTCTGAAGACTACAGTGAGAATGAGCTGGAGCTGTATCAGCAGTACTGTGCCGGAAAGTATGGAGAACACAGCACGgGTTGGaacagtgatgatgatgatggttcATATGCTGATTCATCTATGAGAAAGAGAGCTGTTAAAGTCAAGCATGTGAAAAGAAGAGAGAAGCGATCTGAAAAAAAGAAAGAGGAGAATAAGTCTCGGAAGCACAAACCCAAACAGAAGCACCGCGACCGTGTGAGACACAGCGAGCGTGCCGAGGTTCGGGACAACGGAGGAGCCAGACAGTGTCTCGGACCCGGATGTGTTGAAGCAGCACGCACCAACTCCAAATACTGCTCTGACGACTGCGGCATGAAGCTGGCTGCCAATCGAATCTATGAGATCCTGCCCCAGCGTATCCAGCAGTGGCAACAGAGCCCGTGCATCGCCGAAGAACAGGGCAAGAAGCTTCTAGAGCGAATCCGGCGTGAGCAGCAATCGGCTCGCATGCGTCTCACTGAAATGGAGAAACGGTTCCACGAGCTGGAAGGCATCATTGCTAAAGCCAAACAGCAGGTTGTGCAGCACGATGAAGAGGTCAACGAGGGCGATGACGACACCGATTTGCAGATCTTCTGCGTGTCCTGCAGTCACCCAGTTAACCCCAAGGTGGCGCTGCGTCACATGGAAAGGTGCTATGCAAAGTATGAGAGTCAGACATCATTCGGCTCCATGTACCCCACTCGCATAGAGGGTGCTACAAGGCTCTTCTGTGATGTTTACAATCCACAAAGCAAAACCTACTGTAAGAGGCTGCAGGTTCTCTGTCCGGAGCACTCCAGAGACCCAAAGGTCCCTGCGGATGAGGTCTGCGGGTGTCCATTGGTTCGTGATGTATTCGAACCCACTGGAGAATACTGTCGGGTGTCCAAACGTAAATGTAACAAACACTACTGCTGGGAGAAACTCCGCAGGGCCGAGGTGGACCTGGAACGAGTCCGAGTGTGGTACAAGTTGGATGAATTGTTTGAGCATGAGCGCAATGTAAGAACAGCCATGACAAATCGTGCGGGTCTCATGGCCCTCATGCTGCACCAGACGATCCAACACGACCCGATTACCACAGACCTGAGAACTAACAAGGACAGATAAG

Function

symbol description
cxxc1a Predicted to enable DNA binding activity and zinc ion binding activity. Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Predicted to be part of Set1C/COMPASS complex. Orthologous to human CXXC1 (CXXC finger protein 1).

NR:

description
PREDICTED: CXXC-type zinc finger protein 1-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14960 CXXC1, SPP1, CPS40; COMPASS component SPP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246017.1 True 1913 mRNA 0.50 14 4007588 4012823

Neighbor

gene id symbol gene type direction distance location
tfe3a tfe3a,LOC107584878,LOC107727418,LOC107743115,LOC107701807,LOC107674333 coding upstream 12712 3979779 ~ 3994876 (+)
fgd1 fgd1,LOC107552218,LOC107727417 coding upstream 28387 3932790 ~ 3979201 (+)
pcsk1nl pcsk1nl,LOC107743122,LOC107552210,LOC107701826,LOC107584871,LOC107674382 coding upstream 161643 3835796 ~ 3845945 (+)
LOC122350007 LOC107552172 coding upstream 173434 3828509 ~ 3834154 (+)
LOC122350989 LOC107751585,LOC107696922,LOC107552208,LOC107584868,LOC107674323,LOC107584869 coding upstream 199741 3800278 ~ 3807847 (+)
mbd1a LOC107743107,LOC107701816,LOC107552163,LOC107584915,LOC107727404 coding downstream 1091 4013914 ~ 4027702 (+)
abcd1 abcd1,LOC107701814,LOC107743108,LOC107552221,LOC107727428,LOC107674359,LOC108265308 coding downstream 62195 4075018 ~ 4091029 (+)
plxnb3 plxnb3,LOC107701812,LOC107743121,LOC107727420,LOC107674349,LOC107584917,LOC107601751 coding downstream 80429 4093252 ~ 4162563 (+)
srpk3 srpk3,LOC107743111,LOC107727421,LOC107601770,LOC107584918,LOC107674354 coding downstream 151716 4164539 ~ 4182039 (+)
comta LOC107601759,LOC107584930,LOC107674306,LOC107653432,LOC107743139,LOC107727411 coding downstream 205595 4218418 ~ 4226247 (+)
G60870 NA non-coding upstream 98788 3907712 ~ 3908800 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding upstream 121715 3884882 ~ 3885873 (+)
G60782 NA non-coding upstream 181172 3824902 ~ 3826416 (+)
G60743 NA non-coding upstream 351656 3654761 ~ 3655932 (+)
LOC122350949 NA non-coding upstream 399611 3607315 ~ 3607977 (+)
G60895 NA non-coding downstream 127786 4140609 ~ 4215206 (+)
G61007 NA non-coding downstream 288849 4301672 ~ 4342107 (+)
G61048 NA non-coding downstream 420175 4432998 ~ 4436499 (+)
G61056 NA non-coding downstream 426185 4439008 ~ 4444416 (+)
G61087 LOC107687770,LOC107743582,LOC107696015,LOC107572510,LOC107738665 non-coding downstream 486054 4498877 ~ 4499407 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 76100 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 157031 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 1967752 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 1971608 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 1987554 2014859 ~ 2020034 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 16480 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 1091747 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 1214129 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 2743282 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 2835658 6848481 ~ 6849711 (+)

Expression


Co-expression Network