tmem230b (tmem230b,ct030,tmem230,LOC107713020,LOC107553029,LOC107670990,LOC103023473,LOC101077900,LOC106579885)


Basic Information

Item Value
gene id tmem230b
gene name tmem230b,ct030,tmem230,LOC107713020,LOC107553029,LOC107670990,LOC103023473,LOC101077900,LOC106579885
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2993935 ~ 2998395 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246024.1
CGTGCGCGCTCGCTACATCCGGAAGCGCTACGTTTATAAACATAATCTCATGTGCGGCTGTCGCGAGCCGACATATAATGACGCTTTTAAGTAATactggtttaaaatgatttaaatgcgTTAAAAACggaaacaaaaatcattttcgtTGTGACTCGTACCTCAGGAAAGTCTTTACCAGACTATCCCGAGGCTGAAATATCACGTTCAAGAGTAAATAAACTAAAGAGAAGATGCCAGCTCGAAACACAATAAACAGTGGAGTCAGATACTCCAAACTAGCCAGTGATGATGATGGATACATTGATCTCCAGtTTAAGAAGAGTCCACCTAAAGTCCCTTATAAAGCCATCGCCTTGGCAACCGTTCTCTTCCTCATCGGCTCCATCCTGATCGTCATCGGATCCCTCCTGTTAGCAGGATATTTCGAAGTTAATGAACACCGCGATCGCACCATCCCGGTCCTGGTTATTGGAATCCTGGTCTTTCTTCCCGGGTTTTACCACCTGCGCATCGCCTATTACGCCTCCAAGGGTTACCGCGGCTACTCCTACGATGACATCCCTGACTTCGATGACTGAGCGGCGAGGACGAGCTGATCTGACAGAGAGCTTTGAACCTGGTTGTCCAGCAGCACCGCCGATGTCTGCCAtggaaaaattaattaacagactcattttttaacattttcatagaCTCAGAAGGTGATTGGAATTCATGAACTAGTATGATGGTTCGtgtaatgaatataattttttttttttatggatttaatGCCATTATTTGTAATGCAGACAGGTTTCTGTTCAGTTGTTGCGTTAGTATGCTGTATTGAGTTACAGGTTGTTGCAACAAGCAAAGCCTGAGGCAAGAAAAACTACTCAACTTGCCAcatgctgttttatattttacagttcttGAGATGGGCTGCACTAGGGTTCAAATCTGTCATTAATGAtgggattttttattttatttgtaaaaaggtttcatttttaaatttaaaggcaTTCGTGTATGATGCGGATAAAGCACCATTAAAAGGTTTTCATCTTTATTCTTTAATGTCACGTCACTggatttaacttattttaatttatgtgattttttttggcattataGAGGATactttatgattaaataaattgttttcaaatgaaaactgATGGTTATCATGATTGCATTTAGAAAGCTTCTCGGTATATTCTCAGTTTTTAAGAAAGAGCGTGAACCCTGataataaaactacattaacTA
>XM_043246025.1
GCGTGCGCGCTCGCTACATCCGGAAGCGCTACGTTTATAAACATAATCTCATGTGCGGCTGTCGCGAGCCGACATATAATGACGCTTTTAAGTAATactggtttaaaatgatttaaatgcgTTAAAAACggaaacaaaaatcattttcgtTGTGACTCGTACCTCAGGAAAGTCTTTACCAGACTATCCCGAGGCTGAAATATCACGTTCAAGGTACTTTAGCAAGCTAAACCAGTTAAGCGTGTTTATATAGAcaattagacattttaatatatatacttttttttacatgcagtgCTGCATTGCTATTATTGAATGGTCGACCTGATTTAGTAGGTCAATATTAAAAAACGCAATAAAGCAGATGATGGTTTATGTTCGTATGTGTTAATGATGCggttttaaatgtatgtgcTTTTGGATCAGAGTAAATAAACTAAAGAGAAGATGCCAGCTCGAAACACAATAAACAGTGGAGTCAGATACTCCAAACTAGCCAGTGATGATGATGGATACATTGATCTCCAGtTTAAGAAGAGTCCACCTAAAGTCCCTTATAAAGCCATCGCCTTGGCAACCGTTCTCTTCCTCATCGGCTCCATCCTGATCGTCATCGGATCCCTCCTGTTAGCAGGATATTTCGAAGTTAATGAACACCGCGATCGCACCATCCCGGTCCTGGTTATTGGAATCCTGGTCTTTCTTCCCGGGTTTTACCACCTGCGCATCGCCTATTACGCCTCCAAGGGTTACCGCGGCTACTCCTACGATGACATCCCTGACTTCGATGACTGAGCGGCGAGGACGAGCTGATCTGACAGAGAGCTTTGAACCTGGTTGTCCAGCAGCACCGCCGATGTCTGCCAtggaaaaattaattaacagactcattttttaacattttcatagaCTCAGAAGGTGATTGGAATTCATGAACTAGTATGATGGTTCGtgtaatgaatataattttttttttttatggatttaatGCCATTATTTGTAATGCAGACAGGTTTCTGTTCAGTTGTTGCGTTAGTATGCTGTATTGAGTTACAGGTTGTTGCAACAAGCAAAGCCTGAGGCAAGAAAAACTACTCAACTTGCCAcatgctgttttatattttacagttcttGAGATGGGCTGCACTAGGGTTCAAATCTGTCATTAATGAtgggattttttattttatttgtaaaaaggtttcatttttaaatttaaaggcaTTCGTGTATGATGCGGATAAAGCACCATTAAAAGGTTTTCATCTTTATTCTTTAATGTCACGTCACTggatttaacttattttaatttatgtgattttttttggcattataGAGGATactttatgattaaataaattgttttcaaatgaaaactgATGGTTATCATGATTGCATTTAGAAAGCTTCTCGGTATATTCTCAGTTTTTAAGAAAGAGCGTGAACCCTGataataaaactacattaacTA

Function

symbol description
tmem230b Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including caudal fin; hindbrain; immature eye; midbrain; and tail bud. Orthologous to human TMEM230 (transmembrane protein 230).
tmem230 Involved in synaptic vesicle transport. Located in cytoplasmic vesicle; endoplasmic reticulum; and trans-Golgi network.

NR:

description
transmembrane protein 230-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246024.1 False 1257 mRNA 0.39 4 2993935 2998394
XM_043246025.1 True 1471 mRNA 0.38 3 2993935 2998395

Neighbor

gene id symbol gene type direction distance location
igsf9b igsf9b,LOC107552192,LOC107671028,LOC107713033,LOC107699646,LOC107714578,LOC107553037 coding downstream 552 2952733 ~ 2993383 (-)
ciao1 ciao1,LOC107714582,LOC107671031,LOC107713036 coding downstream 55591 2934045 ~ 2938344 (-)
cdc45 cdc45,LOC107699634,LOC107670985 coding downstream 64000 2921713 ~ 2929935 (-)
zgc:63587 zgc:63587,LOC100700755,LOC101064433,LOC103397778 coding downstream 82074 2884344 ~ 2911861 (-)
sept5a sept5,sept5a,LOC107713038,LOC107671025,LOC107553041,LOC107699650,LOC107714585 coding downstream 110596 2869613 ~ 2883339 (-)
dpysl2a dpysl2a,dpysl2,LOC107713031,LOC107671020,LOC108430340,LOC108266046,LOC108277094,LOC108427246 coding upstream 44786 3043181 ~ 3067341 (-)
bnip3la bnip3la,LOC107552154,LOC107560275,LOC107699644,LOC107671016,LOC107714550 coding upstream 71106 3069501 ~ 3080742 (-)
ppp2r2aa ppp2r2aa,LOC107671018,LOC107713030,LOC107699615,LOC108430337,LOC106585558 coding upstream 83491 3081886 ~ 3091387 (-)
LOC122351051 lrrtm4,LOC107713029,LOC107552197,LOC107671041,LOC107714573,LOC108413329,LOC107694817,LOC107560276 coding upstream 210696 3209091 ~ 3376182 (-)
dock5 dock5,LOC107674342,LOC107714571,LOC107696915,LOC107713013 coding upstream 584949 3583344 ~ 3636194 (-)
G60639 NA non-coding downstream 48004 2945410 ~ 2945931 (-)
G60640 LOC107699617,LOC107714575,LOC107553039,LOC107670999,LOC107552195 non-coding downstream 49928 2943717 ~ 2944007 (-)
G60638 tmem127,LOC107552193,LOC107713035,LOC107699648,LOC107671030,LOC107553020,LOC107714579 non-coding downstream 53457 2939280 ~ 2940478 (-)
G60604 LOC107715152,LOC107553025,LOC107670977 non-coding downstream 381706 2601709 ~ 2612229 (-)
G60566 gcn1,LOC107552181,LOC107754417,LOC107553027,LOC107699625 non-coding downstream 419931 2506238 ~ 2574004 (-)
G60719 NA non-coding upstream 562614 3561009 ~ 3561418 (-)
G60720 NA non-coding upstream 564197 3562592 ~ 3563073 (-)
G60721 NA non-coding upstream 565137 3563532 ~ 3564937 (-)
G60722 LOC107696914,LOC107713026,LOC107552198,LOC107584864,LOC107674302,LOC107714559 non-coding upstream 569421 3567816 ~ 3569810 (-)
G60729 NA non-coding upstream 581166 3579561 ~ 3579961 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other downstream 170109 2782620 ~ 2823826 (-)
bicdl1 bicdl1,LOC107553048 other downstream 441748 2521214 ~ 2552187 (-)
G60564 pxnb other downstream 529564 2460931 ~ 2464371 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other downstream 831932 2131369 ~ 2162003 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other downstream 932454 2059394 ~ 2061481 (-)
G60679 adra1aa,LOC107553034,LOC107699645,LOC107713032,LOC107671010,LOC107552152 other upstream 34072 3032467 ~ 3035092 (-)
lhfpl4b lhfpl4b,LOC107584928,LOC107674308,LOC107727430,LOC107743140,LOC107701811,LOC107552174,LOC103032126,LOC108440531 other upstream 847058 3845453 ~ 3850590 (-)
zgc:113363 LOC107743117,LOC107701819,LOC107727412,LOC107584929 other upstream 1001936 4000331 ~ 4006806 (-)
G60967 LOC107674359,LOC107701814,LOC107727428,LOC107743108,LOC107552221 other upstream 1090329 4088724 ~ 4092157 (-)
G61023 NA other upstream 1302597 4300992 ~ 4307499 (-)

Expression


Co-expression Network