depdc1a (depdc1a,LOC107657894,LOC107752443,LOC107599802,LOC107548279,LOC107699654,LOC107716419)


Basic Information

Item Value
gene id depdc1a
gene name depdc1a,LOC107657894,LOC107752443,LOC107599802,LOC107548279,LOC107699654,LOC107716419
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8469042 ~ 8476547 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246028.1
TTAGGGTAATAATTTCAAACGAGTGTGGGTGAGGATTGAGGCATCCCCGGATATCTGTTTACACATCCAGCGAAGTATTTATTAGCGGGTTTAGCTATTGATATATTCAGCAATACTATTAAATATAGCCAAACGTGTTCAGCAGATCAAAAATAAACTCTTTCGTATATGTAGGAATAATGAAAGTGGCTGTATAGGTGTTTGATACATCGCGATCTTTTCAATGAGTTCACACGTTGTCACTCCAGGTCCTTACAGGGCCACTAAACTGtggAATGAAGTGACCAAGCTTTTCCGGGCAGGGATGCCTTTAAAGAAGCACCGACAGCATTTCAGGGTTTACATGAACTGCTTTACCGCATCAGCAGCTGTGGATTTGCTACATGAACTTTTGAAGAACAACAGCAATTTTGGACCTGAAGTCACCAGACAGCAGACAGTCCAGCTGCTAAAAAAGTTCTTGAAGAACCATGTTATTGAGGATGTGAAGGGTAAATGGGGCTTGGAAGACCTGGAGGACAACAGCCAGCTTTACAGATTTCCATCAACATCTCCACTGAAGCCCATTCCTAACCGTGCCCCTGTTTTGAGGAAAAAGAGTATATCTATGATAGACAAGGAGAGTTTCTTCAAATTCAGGGGCTCTAGGAAATTTGATAAAGAAATATTGGAAAATGTGGATCCAGAAGCACAAGAATCTCCCGAGGGATCTTCCTCAAGTAAGATGGAGCACAGCAGGGAGCTCACAGAGGACGACATTCAAGTTATCTGGAAGAATGTCACACTTACACATTTGCAGAAGTTGGTGGGATCAGGGTCTCTTGAAGATGTTTTGGACCCAGCACAAGTCAATCCTCAGTTCATTGTTTATAATATGACCAAAGTCAATAAACATGGAGTCGTTTCATTGGAAGATAAGACCGATGATTTGCCATACTGGGTTTTGTCTGCCATGAAATGTCTCGCAAACTGGCCAAAATATGACTCAAACCAGCAATCTTACCCAGGATTTGAGCGGGACGTGTTTAAAACGGTTTCAGACTATTTCTACAGCCTTTCTGAACCGCTGCTTACTTACGAGTACTATGAACTCTTTGTCAACATCTTGGTTATGTGTGGCTACATCACAGCTCCTAAAACTCAACGTGGAAAGCGTAAAAGCCAGGAGGAACCCACCTGCCCACAGCCAGCCAAAACCCCATATGTGAACGCTGCCAACCTGTTCAAATCGACTGAATGCCTCTTACTGAGCTTAATAAGAAAGGAGGCCTTCGATGAAACCGATTCGCCCATGAGAGAAGTTTTCAGTTCAAAAGCAGAGGCCCATAGAGTACAGCAGCCCATTTTTAGAGGTAGAAGGGCCAGCGATGGAGACCGGCTGGACGGTAGCTATCTAGAAATTCCTCAAGCTCCCAAAACAGAAGTCCCATTTGGCAGGCTTCGGTCAAGAAGTTGCTCTTTGGAGGGAATTGTTGATAAAAAGGACAGCCTTCTCAGACCGTCTGTAAGCATACAGTCCTGCAGCAGTGATAAATCATCCTCTCAAACAGATTCTCCAGTAGATCCAAACCTCAAATTTGAGCTTCAGGGTTCCTCAGTGTCCATAAACTCTTGTGTTCAAACATCCAGCAACAACACAAGCTCACATCTCCCTTCAGATCTTCACCGAACCAACCAGAGACCCTCCAGGGCCCGTCCCAGAAGCATCGGTAACTTGTTTGACATAGAGGAGAATAGCGAAATGTCTGCTAGCAGCTTTAGCATCCACGCTCCTGTAGCTGAAATTACCATGAAGCCAGATTCCACATCCAGCATTGGCCTTAGAGGTCCCGGTTTGCTCAGTTTGCATGGAAGTTGCATGGACATTAGGGCAGGTCCGAGCTTTAGCAGGCGCTGTCAGAGCTCTCTGGACCTGAGCAAACCTGCACCCACTTGGCCCCCGTTAACACGCCACCCAGAGCAAAGTTTACTGCAGCCGTCACTAGAGCGGGTGGCCATCGAGGGCCTGCAGCTCTGCACATTACTCCTGCCGCCCGCCAGTCGCCGCAAACTACAGCTTCTCCTGCGAATGATCTCACGTATGAGCCAGAACGTCGATATGCCACGTCTGCATGATGTCATTGGAACACGGACTCTGTTGGTGCAGACGTTCTCTAGATGCGTCTTGAGCTGTGAGGAGGTTGATGATCTGGACGAGCTCTTGGCTACAAGGCTGTTATCATTTCTCATGGATCACCATCAGGAGGTCATGCAAGTGCCTGTGTACCTGCGCAATGCTGTTGAAGATCACATTAGTTACCTCAAGTCACTGACCACATACCCAGGCTCTGGTGTTGCCATGCCGACCTACTCATTCTGCAGGCAGATCAGCACTCAGGAGTTTGAAGAGCAGAAACTGTCTGTGTCCCAGACTGCTCTCGCTGACCTACTGGAGAGTCTCATAAAGGACAAGACCATGTCTgcgaaagagaagaaaaagaagctaaaactgttTCAGAAGGAATATCCAGATATCTACTCAAGACGTTTTCCTACAACAGAAAGTGAAGCTCAACTTTTTGCAGATAAACCAAAGATAAAACCGCCAATGCTGTTAAGCATCAAGAAAGCCAAAACTTTCAGTATTCGAAACTGAATACCTCTTAAATcgattatgaataatattttggtATACTGTTTGAGATTAAAGACCTCTAGTTTATCTGTTGCATAGTATAATCTGAATGGTAACTTACTTTTgaagttttttaaaatggtatttCTCTCTAGTGAAGtgacttttttctgtttcagtacAGATATCTGTtagtttaatgttatttatttaatgtgtgtgatttattgtaaattattggGAGCTTTCAGACATTCATAGCGTCATATTGACAGAAGCTCAGAGGACCCACAgcaaatattatgcatatagGTTTGACATACTGTTTACATTGTCATCTCGGAACAAAATGAAGATTTTCTTTTAGTCTTGTAACATTGTTTGTCACTtttagtcatttgtttttttattatacttttttgtgtgttttcactaTTCGGGTGCATAGAAAATGTTCTACTTCTAAAGACAAATGTTGATTTTTCTATGTGATGTGGGAGTTTCCTGGCTATTAAGCTATTATGGGATAATTTGCACTGTTTTTTCATCTCAAATAACTAACGTATAGTCATTACTtatgtacatattttctttcttgtcaGTACTATCTACTGATTGCTTATGTTCCTCttttatcagtgttttattatcttgCACTCAGACATTGTACTGATTCAGTGGCTTGcagattttgaatgaaaaactaAACTTGGACAGTGATCGACTTTACTGAGCATAAGTGAGCCAAATCTATTGTTTTATGTTGTCTATTTTATTGTATGACTCTTATACTGTTCCtctatgcaataaacattttaagtgca
>XM_043246030.1
TTAGGGTAATAATTTCAAACGAGTGTGGGTGAGGATTGAGGCATCCCCGGATATCTGTTTACACATCCAGCGAAGTATTTATTAGCGGGTTTAGCTATTGATATATTCAGCAATACTATTAAATATAGCCAAACGTGTTCAGCAGATCAAAAATAAACTCTTTCGTATATGTAGGAATAATGAAAGTGGCTGTATAGGTGTTTGATACATCGCGATCTTTTCAATGAGTTCACACGTTGTCACTCCAGGTCCTTACAGGGCCACTAAACTGtggAATGAAGTGACCAAGCTTTTCCGGGCAGGGATGCCTTTAAAGAAGCACCGACAGCATTTCAGGGTTTACATGAACTGCTTTACCGCATCAGCAGCTGTGGATTTGCTACATGAACTTTTGAAGAACAACAGCAATTTTGGACCTGAAGTCACCAGACAGCAGACAGTCCAGCTGCTAAAAAAGTTCTTGAAGAACCATGTTATTGAGGATGTGAAGGGTAAATGGGGCTTGGAAGACCTGGAGGACAACAGCCAGCTTTACAGATTTCCATCAACATCTCCACTGAAGCCCATTCCTAACCGTGCCCCTGTTTTGAGGAAAAAGAGTATATCTATGATAGACAAGGAGAGTTTCTTCAAATTCAGGGGCTCTAGGAAATTTGATAAAGAAATATTGGAAAATGTGGATCCAGAAGCACAAGAATCTCCCGAGGGATCTTCCTCAAGTAAGATGGAGCACAGCAGGGAGCTCACAGAGGACGACATTCAAGTTATCTGGAAGAATGTCACACTTACACATTTGCAGAAGTTGGTGGGATCAGGGTCTCTTGAAGATGTTTTGGACCCAGCACAAGTCAATCCTCAGTTCATTGTTTATAATATGACCAAAGTCAATAAACATGGAGTCGTTTCATTGGAAGATAAGACCGATGATTTGCCATACTGGGTTTTGTCTGCCATGAAATGTCTCGCAAACTGGCCAAAATATGACTCAAACCAGCAATCTTACCCAGGATTTGAGCGGGACGTGTTTAAAACGGTTTCAGACTATTTCTACAGCCTTTCTGAACCGCTGCTTACTTACGAGTACTATGAACTCTTTGTCAACATCTTGGGTTTACTGCAGCCGTCACTAGAGCGGGTGGCCATCGAGGGCCTGCAGCTCTGCACATTACTCCTGCCGCCCGCCAGTCGCCGCAAACTACAGCTTCTCCTGCGAATGATCTCACGTATGAGCCAGAACGTCGATATGCCACGTCTGCATGATGTCATTGGAACACGGACTCTGTTGGTGCAGACGTTCTCTAGATGCGTCTTGAGCTGTGAGGAGGTTGATGATCTGGACGAGCTCTTGGCTACAAGGCTGTTATCATTTCTCATGGATCACCATCAGGAGGTCATGCAAGTGCCTGTGTACCTGCGCAATGCTGTTGAAGATCACATTAGTTACCTCAAGTCACTGACCACATACCCAGGCTCTGGTGTTGCCATGCCGACCTACTCATTCTGCAGGCAGATCAGCACTCAGGAGTTTGAAGAGCAGAAACTGTCTGTGTCCCAGACTGCTCTCGCTGACCTACTGGAGAGTCTCATAAAGGACAAGACCATGTCTgcgaaagagaagaaaaagaagctaaaactgttTCAGAAGGAATATCCAGATATCTACTCAAGACGTTTTCCTACAACAGAAAGTGAAGCTCAACTTTTTGCAGATAAACCAAAGATAAAACCGCCAATGCTGTTAAGCATCAAGAAAGCCAAAACTTTCAGTATTCGAAACTGAATACCTCTTAAATcgattatgaataatattttggtATACTGTTTGAGATTAAAGACCTCTAGTTTATCTGTTGCATAGTATAATCTGAATGGTAACTTACTTTTgaagttttttaaaatggtatttCTCTCTAGTGAAGtgacttttttctgtttcagtacAGATATCTGTtagtttaatgttatttatttaatgtgtgtgatttattgtaaattattggGAGCTTTCAGACATTCATAGCGTCATATTGACAGAAGCTCAGAGGACCCACAgcaaatattatgcatatagGTTTGACATACTGTTTACATTGTCATCTCGGAACAAAATGAAGATTTTCTTTTAGTCTTGTAACATTGTTTGTCACTtttagtcatttgtttttttattatacttttttgtgtgttttcactaTTCGGGTGCATAGAAAATGTTCTACTTCTAAAGACAAATGTTGATTTTTCTATGTGATGTGGGAGTTTCCTGGCTATTAAGCTATTATGGGATAATTTGCACTGTTTTTTCATCTCAAATAACTAACGTATAGTCATTACTtatgtacatattttctttcttgtcaGTACTATCTACTGATTGCTTATGTTCCTCttttatcagtgttttattatcttgCACTCAGACATTGTACTGATTCAGTGGCTTGcagattttgaatgaaaaactaAACTTGGACAGTGATCGACTTTACTGAGCATAAGTGAGCCAAATCTATTGTTTTATGTTGTCTATTTTATTGTATGACTCTTATACTGTTCCtctatgcaataaacattttaagtgca

Function

symbol description
depdc1a Predicted to enable GTPase activator activity. Predicted to act upstream of or within intracellular signal transduction. Is expressed in nervous system; pectoral fin musculature; pharyngeal arch 3-7 skeleton; and proliferative region. Orthologous to human DEPDC1 (DEP domain containing 1).

NR:

description
DEP domain-containing protein 1A-like isoform X4

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246028.1 True 3438 mRNA 0.42 12 8469042 8476547
XM_043246030.1 False 2583 mRNA 0.40 11 8469042 8476547

Neighbor

gene id symbol gene type direction distance location
LOC122351041 rpe65,rpe65c,LOC107657893,LOC107752442,LOC107700531 coding downstream 1829 8463209 ~ 8467213 (-)
osbpl9 osbpl9,LOC107699596,LOC107657891 coding downstream 11808 8431193 ~ 8457234 (-)
LOC122351130 NA coding downstream 39268 8429694 ~ 8429774 (-)
LOC122351131 NA coding downstream 39498 8429474 ~ 8429544 (-)
LOC122351132 NA coding downstream 39722 8429253 ~ 8429320 (-)
ndufaf2 ndufaf2,LOC107752447,LOC107743894,LOC107657848 coding upstream 2134 8478681 ~ 8480731 (-)
rab3c rab3c,LOC107599832,LOC107700568,LOC107743864 coding upstream 124448 8600995 ~ 8606166 (-)
skia ski,skia,LOC107548407,LOC107699765,LOC107657901,LOC107599811,LOC107710903 coding upstream 270340 8746887 ~ 8808599 (-)
prkcz prkcz,LOC107710919,LOC107743854,LOC107548418 coding upstream 343809 8820356 ~ 8911987 (-)
st6galnac5b st6galnac5b,LOC107599835,LOC107657873,LOC107710911,LOC107743856,LOC107550326,LOC107700626 coding upstream 446146 8922693 ~ 8934751 (-)
G62076 NA non-coding downstream 38907 8427285 ~ 8430135 (-)
LOC122351107 NA non-coding downstream 199825 8253538 ~ 8269217 (-)
G61967 NA non-coding downstream 495022 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding downstream 514400 7951561 ~ 7954642 (-)
G61965 NA non-coding downstream 690478 7749703 ~ 7778564 (-)
G62120 NA non-coding upstream 31344 8507891 ~ 8508123 (-)
LOC122350893 NA non-coding upstream 235490 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 436935 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 442211 8918758 ~ 8920904 (-)
G62241 NA non-coding upstream 444934 8921481 ~ 8921696 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 52489 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 236268 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 781480 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 1366049 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 1412613 6875349 ~ 7056429 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 170723 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 175757 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 780696 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 1223847 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 1478134 9954681 ~ 9969485 (-)

Expression


Co-expression Network