def6a (def6a,LOC107550223,LOC107755289,LOC107599059,LOC107757990,LOC107700524)


Basic Information

Item Value
gene id def6a
gene name def6a,LOC107550223,LOC107755289,LOC107599059,LOC107757990,LOC107700524
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6850516 ~ 6859706 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246033.1
cagagcgagagaaagagaaggcagtgaaaaaaggaaaaacgaAGAGTAAAATTGCTGCAGTCATGGACTTGCGTTCAGAACTGCTCAAGTCCATTTGGTACGCTTTCACCGCTCTAGATGTGGAGAAGAGTGGAAAGGTGTCCAAGTCTCAACTCAAGGTCTTGTCTCATAATCTTTACACGGTTCTGTGTATCCCACACGACCCAGCGGCTCTTGAGGAACACTTCAGAGATGACGACGACGGTCCAGTCTCCAGCCAGGGATACATGCCCTACCTCAACAAATACATCCTGGACAAGGTGGTGGAAGGCACGTTTGTCAAAGAAAATGTGGACGAGCTCTGCTGGACTCTTACTGCCAAGAAGAACTATCGACCAGAGGGAAAGTGTGTTTTACCTGGAAAAGACGCCTTCCGGCTCTGGTGCCTGTTCATATTTCTCTCGGAGGACAGATATCCTCTGGTCATGATCCCTGATGAGGTTGAATATTTACTGAAGAAGTTTTGCATGGCTATGAGCGTCGAGTTGAACTGTGTTGAACTGGAAGACTTCATTTCCCAAGATACTGTTCAGCAGAATGGCTTCACTGTATGGGCCTTTCTGGAGATGATGAATTCTGGGAAACTAACGCGAGGCATTGCCAAAGAAACCGTCAGTATGGCAATAGAGGAGGTGTACCGGGAAATAGTGGGTGATGTGTTGAAAGAGGGATATCTGTGGAAGAAAGGCCAGTTGAGAAGAAACTGGATTGAGCGTTGGTTCACTTTGAGACCCAgtactttaatttatttcactAGCGAGGACCGCAAAGACCGCAAGGGCAACATTCAGCTTGATGGAAACTGCTGTGTAGAGGTTCTTCCTGACAGAGATGGGAAGAGGTGCATGTTCTGTCTGAAGACGCTCACCAAGACCTATGAACTCAGTGCATCTGACACCAAACAGAGGCAGGAGTGGACTACAGCTATCCAAACAGCCATCCGGCTGCATGTAGAGGGTAAAGCTTCTCTTCATAAAGACCTAAAGCTGAAACGGCGTGAGCAGCgggaacagagagagaagaggcgGGAAGCGAAGGAGCAGGAGCTGCAGCGTTTACGAGCCCTGCAGGAAGAGCGCGAGCGGAAGATGGCCGAGCTGGAGCTGCTGAAGGAGGCACAGAGACAAGCGCAGGCGCTGCTGGAGCAGGACGAACTGCGCAGACGACAGCAACATGAACAACTCCAGCAGACCCTGGAGATCCAGCTCAAAGAGGCTGAAGAgGCGCGGGCGAGCATGCAGGCTGAGATGGCACTAAAGGAAGCtgaggcagagagacagagaacacGAATCAAAGAACTGGAGGCCATGCAGCAGCGACTAGAGGAGGCGTTACAACAGGAAATCAAAGCCAGGCAGGACGAAGAGGCCTTCCGTTATGCACAGGCTCGGCTACTggctgaggaagaggagaagatgAAGGCCCTTATGTCTCTCCGTGAGGAGCAGGAGGAATATATCCAGCGTGCCCAGCGGGAGAAACAAGAGCTCAGACAGGAAATGGAAAGTAAATCTCGATCTCTGGAGGAAGCACAGAGGCAGCTGGAGGAGGTCAGAGCCAATCGCCACCGAGTGGACCAGGATGTGGTGGCGGCTCAAAGGAAGCTTCGTCAGGCCAGCACCAATGTTAAACACTGGAATGTTCAGATGAACAGATTAATGCATCCAATCGGACCAGGAGAAAAACGGTCCTCGGTAGGCGGATCTTTTTCCAGCTTTCGCATCCCTTCGCAGAAGGATCCGGGACTGCGTTTGAGGCAGAAATCAGATGAGCCGGATGaggaaagcaaagaaaacaTGGAGAGCAGAGGAGGGTGCGAATCTGACAGGCGTTTGTCTACAAATGGAGATATGGAAATACCTTAGACaacctcagaaaaaaaaaaatctttcttccTCAATGTTAAGACTGATTTGAATGAAGGAAAGTTATTTTTGCTAGGTACCAAGACCACATGCCGTTATACTGTTTAATAATGTCCGTGATTGTTAATAGCttgttattaatatagtaatgtTTTGTACACTTCACACAGTTTGAAAAGTATTGTACTGTAGTTGTTAAATATCTGATTGACTCCTAAGTTACTCAAAGCCTTATGTAGACTTAATGtgcactgaataaataattaagcatttttCAAGATA

Function

symbol description
def6a Acts upstream of or within cell migration involved in gastrulation and convergent extension involved in gastrulation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including female organism; fin; lateral line; post-vent region; and somite border. Orthologous to human DEF6 (DEF6 guanine nucleotide exchange factor).

NR:

description
PREDICTED: differentially expressed in FDCP 6 homolog isoform X1

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG:

id description
K20072 SWAP70; switch-associated protein 70

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246033.1 True 2186 mRNA 0.48 11 6850516 6859706

Neighbor

gene id symbol gene type direction distance location
ndufb11 LOC107550213,LOC107665059,LOC107700515,LOC107599058,LOC107755291,LOC107757991 coding downstream 801 6848473 ~ 6849715 (-)
rhoaa rhoaa,LOC107599000,LOC107758012,LOC107603137,LOC107755302,LOC106566835,LOC105890655 coding downstream 3163 6841786 ~ 6847353 (-)
si:dkey-6n6.1 si:dkey-6n6.1,LOC107599056,LOC107755293,LOC107665074,LOC107699266,LOC107757992,LOC107550204 coding downstream 16081 6825338 ~ 6834435 (-)
bgna LOC107665058,LOC107755294,LOC107700508,LOC107550196,LOC107757994 coding downstream 26503 6816911 ~ 6824013 (-)
dedd dedd,LOC107755304,LOC107665071,LOC107603111,LOC107699191,LOC108411641 coding downstream 36176 6807841 ~ 6814340 (-)
sin3b sin3b,LOC107755301,LOC107758010,LOC107699271 coding upstream 1201 6860907 ~ 6874965 (-)
qsox1 qsox1,LOC107665072,LOC107755296,LOC107758006,LOC107699344,LOC107603198 coding upstream 252430 7112136 ~ 7135496 (-)
cep350 cep350 coding upstream 277356 7137062 ~ 7168792 (-)
LOC122350872 soat1,LOC107657858,LOC107758003,LOC107700347 coding upstream 503529 7363235 ~ 7370455 (-)
LOC122350680 LOC107599044,LOC107700337,LOC107757981 coding upstream 515329 7375035 ~ 7377757 (-)
G61663 NA non-coding downstream 192232 6657498 ~ 6658284 (-)
G61640 NA non-coding downstream 288598 6561450 ~ 6561918 (-)
G61629 NA non-coding downstream 298805 6551404 ~ 6551711 (-)
G61582 NA non-coding downstream 382100 6467953 ~ 6468416 (-)
LOC122350799 LOC107725298,LOC107598986 non-coding downstream 575306 6273884 ~ 6275210 (-)
G61782 NA non-coding upstream 2322 6862028 ~ 6862954 (-)
G61860 cacna1e,LOC107707593,LOC107657843,LOC107599003 non-coding upstream 414884 7274590 ~ 7281165 (-)
G61865 NA non-coding upstream 446406 7306112 ~ 7308340 (-)
LOC122350886 NA non-coding upstream 518049 7377755 ~ 7378459 (-)
LOC122350888 NA non-coding upstream 530582 7390288 ~ 7394209 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 33769 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 407534 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 889410 5919961 ~ 5961106 (-)
G61513 NA other downstream 1232852 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 1240944 5605172 ~ 5609572 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other upstream 15643 6875349 ~ 7056429 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 231744 7091450 ~ 7102993 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 817790 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 1257302 8117008 ~ 8232774 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 1532639 8392345 ~ 8416553 (-)

Expression


Co-expression Network