LOC122349917 (cep104,LOC107668088,LOC107745778,LOC107695283)


Basic Information

Item Value
gene id LOC122349917
gene name cep104,LOC107668088,LOC107745778,LOC107695283
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11141183 ~ 11159286 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246055.1
ATGCCTCATAAGATAGGCTTCACTGTGATCAGCTGGTCTGGTCATGAAGGAAACTACAATGCCAAAAAGCTGATGGTCCACGCGCCCACAGTCAATGGCTGGAGATCCACCagGTTCTGTCCATTTCCTCAGGAAATCATATTGCAGTTGGTCGAGAGATGTCGCATCCGGAAACTCCAGCTACTGGCCCATCAGTACCTGATTCCTTCCAAGATCGAGTTCCACATAGGAGACAGACTGCCGGAGTCCAGCTCGCCCCAGCAGACTCACAGTCTTCACAGATTGGGGTATGTGTCCCTCTCTGACAACGAGAAGACGGCTTTCAGAGCCAGAGAGCTGAAGTCTGTTCATGTTGATGCTGTTGGGTCTTACTTGAAGCTCACTTTTCACAGAAACCATGTTAATCAATACAACATCCACAATCAGGTTGCCTTGGTGGCCCTAAATATCTTGGGTGACCCTGTGGATGGAAATGACACTGGGACGGCACTAAGCAGAGATCAGCTGATCGATCAGTACCTAAACAGCAGCCAATACAGCTCAGCTTTGGATGGCACATACACTGGGCTCTCAAGTTATAAATGCGATTCTATCTCGCCACTCGATGACTTGGCGTTTGACATGTATCAGGACCCTGAGGTGGCCCATATCATTCGTCTGCTGGACCAGAAAAAACAGGACATGGTTCGAGAGGAAAGATTTGATCTGGCCAAAAAACTCAAACAAGCTATCGCAGACCTGCAGAAGgtgGGTGAGCGTTTGGGCCGGTATGATGTGGAGAAACACAGTGCCATAGAACGAGAGGACTATGACACAGCCAAACAGAAAAAGGAACAAATGGAAGCTTACAGGCTCACAGTCTACCATCAGCTGGAGCTCCATGACCTGTTAGACATCAGTCAGATCCACAGAACGTCTGAGCTTTCCATCTCAGATTTTTCCTCTCCACGTGTTGGGACACAGAAAGACACGCCACATCCAGCAGACTCACCCAGAAAGAGAAGACAGAGGCAACATGTGAAGGAGACAGACGAGCATgccatttcaaaaactgctagCCCCAAACATACAGTCGCCTTAACACCTCTCACTCCTCCTCACGTCCCCAAGCTCGATATTAGTTCCCTTCCTTATGATGAGAGGCCTTTACCAGCACTTAAAAAGAGGTCGAGTGATCAGCCAATCAGCGAGCTTGATAAAATACACCCTGTGACAGGTACAACCACCCCACGTAGTCCTGGAGCCTCGGGACAACCAGAACCGCTCACAGAGAAAGCTCAGAGAGAGGCCAGTCTGTCCATCGACATCTTTGAGACAATCTGGTGAGACACCCATTACAGCTTCCAATTGGTGGCAGGGGCCTATTCCAAGACGTGGTCCTACAGGGAAGATGCTTTGCTGGTGGTCTACAAGAAACTGCTGGAGGTTCCACCTGGAACCCCGAAAGCAGAACTGCGGAGCATGACGAAAGCAGCAGTGTTTCTCTGCAAGAAAGCTCTCACAGATAAAGTGTCATCTgTGTTTCTTGCATCTCTGAATCTGCTTGTGATTCTGAGTGAGTTTACTAACCATCAGCTAGGCAAATCTGAAATCAATCACTGTGTGGAACAGACTTGGAATAATCTGCTGTCCAGGACTGGAGAATCAACCCCGAGATTGAGAACACTCGCTATTACCTTCATACAGGAAATGGCTTTGTTTAAGGAGGTGAGAGCTCTGCAGATGGTTCCTGTGGAGCTTGTGAGGCCCATGCAGAGCACTGTACCCACTAGACTGGCTCTGAGCAGGCTGGAACTGTTGGAGAAGCTTCTAGAACAGCTGGGCACCAAGGACTCTGGCTTCACCCTCGACAACATCATGCGGTTTCTGGCAGGTGGATTGGAGCACAGCGCTGCCTCGGTGCGAGAACTTTCTGTGAGAGTCGTCCAGGCTATGTACCGTCTTCATGGAAAAGCAGTATTGAATTTTCTGCCACCCGATGACACCAGCACACGTAAAAATGTCCTCTACAAGAACCTTTTTGACTCACTCGCCGCGATAGATGGAAACGCCATCGACACGCAGAAGCCAAAAAAAGGAGCAGAAAAAGAAGAtggtgagaaagaaaaagaggaaatcaGAAGCTTGCAAGAGCAGCTTGCAGTACTGAAGGAGATCAGCGAGAAAGGGAAGGAAAATACCAAAGTACCTGAGAAAAAAGCTGAGAAGTCAGTCAAATCAGCAGGTGTTAAGAAGGTAAACCAGTCTGTTCCTGCCGATGCAAAAGGAAGCCAACCATCTGTAGCTAACTACTTAGACAACCTCTGTGTATTTTCTGTGGAGAGAGATGAGTCGTTTACAGAGGATGGGCTCGACCTGCACTATTGGAAACATTGCCCGATGCTGCAGCGCTGTCTTCAGTGCAgacagGTGGTGGAGATTGCGAGCCTGACGGAGCACTTGCTGACTGAATGTGAGCGGAGGGCGGATTTCACCCAGTGTCCTCTCTGCTCCGAAGCGCTCACTCGACATAAGCTGACTGAGCATGCTCGAAGCGCAGCTTGCAATCcacCAACTTCTGTAGAAAACTGCAATCATTGTCCTCTCTGCCATGAAAACTTTGCCTCAGGGGAAGAGGGCTGGAAGTCTCACCTCATGGGAATCGAGGGTTGTAAACAGAACTCACGGAGGAGAGCGGTACAACAGAGCAGACCCCCTCACGCACAAGGTAAGACGACAACAATCACATCCGAGTCCAAGCCTCGAGGTCTGGGCAGAGGCAGTCGCATCCCTGCTCCAGCTTCCAGGATCAACAGACGCACCAGAATTCTTCCAGGCAAGGCCTCCAGTCACCGACTACAACAGGCATAGCTACATGCTACCTCTAGTAGCTTtgctaaaataatcaaaaaaaaaactcacacaaATCTACTTTATATCAGGTTTCAAATGATGCATTATTGCTGTACTGATTTAGAAATAAATCTAGACAGCATCATTATTGTCTTTGACACCTGATATAAAATGTACCCATTAATGAATGTAAAAGATCAAAAATGTGCGTGCGAACAAAAATACTTGAACTGAAACACATTTATGACCAGATACGCAGTCTGTATTTTGCTGTTTACCTTTTCAGGTGGATCAcctggattttttttgtaatctattTGAGAATTTTTATACTTgtttgtttagtgtgtgtgtgtgcgcgtgtgtgaggTGTATGTGAATATTTTGTGATTGTAGCACTTTGAcatttaatggtttttaaaacattgttagCATCATAGCCAAACGTAAAATTTAGTCTTTGAAAAGAACGCAAACATTCTGTTCAAGAGATTTGAACCTTGTATCTGATTCAGATGCTTAAGTTTCCTGCACCACCCACCTTGCAAAATTtggataacaaaaaaaaaaatgtttcttggaAAGGGCAAGGGCTAATAGTAGTCATAGACCTGCCTTGGTGCTTCTCAGAAAATCGAGACCTGGAACAGAGATGTTGCCAATATGAGAGGCCACTGCTGAGAGAATAAAGAGCCATAAGGGATGATGATGCTCTTAGACTATTATTTCGTATGTTTGGTCTTTGCATTTGCTTCAGTATTAGAGAAACTCTCGGCACGTAAATGGTTTTGTCTAGTGCGTGATGTGTTAAATCGCTGGGTATCATCGGCATTAAACTGTGCTGTTCTGTTGGATTGTGCTTTAGTTCAGTTGTGCTTATAAAATCATTGAGACCGAAGAGAAGAAATAACATAAAGGCAGTTTGAGTCTGATCCTATGCCTGAAAATAAGCCATAATGTCCcattttaaagtatttgcaCACAGAGAAGACTGAATATAGGTATGTCGTCATAGTTTTCCTATTATGTGAGACATGATAAGCAAGGGAATTTTCAAGGCACAACCCCAATAGGCATAATGCATTGTTAAGAGCTTCTACAGCTCAATTCTGAGGCATGCATTATATAACTGACATGAATCAACTCTTACTCACATGATTCACTGGTGTGGCATTACTGCGATGTctaattaattattactatcattattaatttaaataaatcagcctaaacaattattttagagTGCAGAGAGTGATCCAAAACTTAACTTTTTCGCATCAAATCCTGACACATACCCAATAGTATTAATTTTTCAGTCAAAAGTATAACTGTATAgtatatagataatatatagaTGATAATGATATcatatattgctttattttgtggagtagaactttttttgtgtttgctttcatttggatttattttaattatagtatAATTACGAAGTCATATCATAGTAACCTGGAGGAGGAGGTAGCTGGAAATGTTGCACTACTGTGTGCTGGCAGTTCTCAAGGCCACgattgcagggttttttttataggtACAGTCTTAGTCTGGCCACTTTCCATTTTCCTCAGGTGTAcaattgacaaaatatttgtCCGTACAGAGTAAGTGTTTGCTCCTAGACATTATGaaacaagattttaaatatttttctgattGTAAATTGAATTGTCATGACACATTAATTCTGTGCCCATCATCTGTATGTGCATCGATATCAACAGAAGCTAATTTCTGctttaaagctgttttaataaatgtatttgggTAAAGTCA

Function

symbol description
cep104 Acts upstream of or within cilium assembly; cranial nerve development; and heart looping. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in Joubert syndrome 25. Orthologous to human CEP104 (centrosomal protein 104).

NR:

description
PREDICTED: centrosomal protein of 104 kDa-like isoform X1

GO: NA

KEGG:

id description
K16458 CEP104; centrosomal protein CEP104

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246055.1 True 4626 mRNA 0.44 24 11141183 11159286

Neighbor

gene id symbol gene type direction distance location
LOC122349916 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding downstream 3642 11134703 ~ 11137541 (-)
c8h1orf174 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding downstream 173096 10964582 ~ 10968087 (-)
LOC122350349 nphp4,LOC107695281,LOC107550077 coding downstream 179193 10826429 ~ 10961990 (-)
LOC122349966 NA coding downstream 607845 10529443 ~ 10533338 (-)
LOC122349964 ela2l,LOC107745782,LOC107695279,LOC107549241 coding downstream 612466 10526347 ~ 10528717 (-)
lrif1 NA coding upstream 63754 11223040 ~ 11228121 (-)
apex2 apex2,LOC107668008,LOC107550000,LOC107695293,LOC107549375,LOC107745771 coding upstream 70043 11229329 ~ 11232003 (-)
csde1 csde1,LOC107731193,LOC107549382,LOC107695294,LOC107549999,LOC107745769,LOC107668033 coding upstream 76188 11235474 ~ 11250583 (-)
porcnl LOC107731263,LOC107549961,LOC107668005,LOC107695296,LOC107550497,LOC107745836 coding upstream 91595 11250881 ~ 11256508 (-)
magixa magixa,LOC107731248,LOC107668068,LOC107549995,LOC107695301 coding upstream 192018 11351304 ~ 11392671 (-)
LOC122351000 NA non-coding downstream 316132 10819217 ~ 10825051 (-)
LOC122350960 NA non-coding downstream 341220 10755389 ~ 10799963 (-)
G62861 LOC107549259,LOC107745781,LOC107668121,LOC107555602 non-coding downstream 443058 10696335 ~ 10698125 (-)
G62835 alas2,LOC107731137,LOC107555603,LOC107549233,LOC107745783,LOC107667982 non-coding downstream 618696 10520659 ~ 10522487 (-)
G62831 NA non-coding downstream 707067 10431781 ~ 10434116 (-)
G62974 NA non-coding upstream 37867 11197153 ~ 11205373 (-)
G62977 NA non-coding upstream 42409 11201695 ~ 11210161 (-)
G62992 NA non-coding upstream 117073 11276359 ~ 11276914 (-)
G63014 NA non-coding upstream 247668 11406954 ~ 11441996 (-)
G63065 NA non-coding upstream 363736 11523022 ~ 11523638 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other downstream 9945 11096140 ~ 11131238 (-)
cep104 cep104,LOC107668088,LOC107745778 other downstream 150448 10973305 ~ 10990735 (-)
trnar-ccg_26 NA other downstream 600892 10540219 ~ 10540291 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other downstream 661132 10440764 ~ 10480051 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other downstream 749140 10389183 ~ 10392043 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other upstream 125068 11284354 ~ 11345988 (-)
G63095 NA other upstream 402992 11562278 ~ 11615925 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other upstream 618985 11778271 ~ 11779251 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 892071 12051357 ~ 12054530 (-)
G63385 NA other upstream 1104408 12263694 ~ 12264533 (-)

Expression


Co-expression Network