si:dkey-90l8.3 (si:dkey-90l8.3,LOC107714563,LOC107698086,LOC107556214,LOC107563853,LOC103024553,LOC108426648,LOC108264996)


Basic Information

Item Value
gene id si:dkey-90l8.3
gene name si:dkey-90l8.3,LOC107714563,LOC107698086,LOC107556214,LOC107563853,LOC103024553,LOC108426648,LOC108264996
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20690830 ~ 20696690 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246065.1
GTGAAGTGTACGGCTCCGTCGCGTCACGCCTGTGATCATAAAAGACCCGCGGCGCTCGTCTCCGTCCGGCAGTGCGCTTCCTCCGGTGCTCGTCCGCTCTTAGACGCGTCCCACGGAATAAACACTCGCTCTCGGGCTCTGCTGCGGAGCGCCGCGCGATGCGACGGACCCACTAACTCTGCCCTGTCCAGCAAAGAGACGTGAACCGAATCGCCGTTTCGGTACAATGTGGGCGTGAAGAGGAGCGTCACGAGAGCGCGAGTCTCGAGGTGGATAACTTCAACTTCGTACGGCGTGAGAACCCACCGGAGAACCGAAGCTCTTCAAGCCGCAGCTATGGTGAACAGCCAGGTCTCAGGCGGCGTGTGTGCGTCCAGGTCGTGCGCAGGCTGCGGGGGTCGAATCGCCGACCGCTTCCTGCTCTTCTCCATGGAGCGCTACTGGCACACGCGCTGCCTCAAGTGCTCGTGCTGTCAGGCTCAGCTGGGAGAGATCGGGACCACCTGCTACAGCAAGGGAGGCATGATCCTGTGCAGAACAGACTACATCAGGCTGTTTGGGCACACGGGGGCTTGCAGTGCATGTGGTCAGTCCATTCCTGCCAGTGAAATGGTCATGCGGGCACAGGGAAACGTCTACCACCTAAAGTGCTTCTCTTGTGCAACGTGCAGAAACCAGTTGGTCCCCGGGGACCGATTCCACTACGTAAACGGCACCATATTTTGTGAACACGACCGGCCAGGATCCGCGCTCCTTAATACTCACCTGCAGAGCAACCCAGTGCTACCGGACCAGAAAGTTTGCTGAAGGACTCGCGGTCTTCTTCGCCCCTTCCCATTCTCCTCTCTGTGTTTACCCTCCAGTGTCCTTCTCATCACAGCTCTTCACTCAGACATCCTCCAGACACTCCTCCTTTTTGACGcacttatgtttttaaatgaaaaagtatctTTGAGCGGGGGAACGAGTTTGGGCTGAGAGCGATGGAAGCATTTCTTTATATCTGACTTCGTATCAAGCTGTGGTGGATTCTGCAGTATCTCTCTTTGTGGGTTCCCTGAAAACAGAAGTGACTTCTATTTTCTCACAGGATATCCTGCCTCTCTCACATCTAACCTCAGAGAGGAGGCTTCGTCTGAAAGCAATGTATGCTTTTTCGAGTCGAGAAACTGCTTTCACAACACATTTTTGACATATATCCAGTTTAGAAAGGATATTTAATCATGAGCAAATGCATCGAGAATTGTTTGGGACTTGAGTCCATTACATAACAGAGactgatgactttttttttgtttgaagtgATGGTAAACCGTGCACTCTAAAGATGCGGCCACAGCGAATTTAAGCAGTTTTGCTGTATAAAAATATGCCCGTTGTCAATACTGTAGCGGTGTATTAACACAGCAAGCACTCACAAATCAGTTTCAAACCCTTTCCAATTGTGTTGAATTTTCGAGAGCAATTTGAGCATAAGCAAGTTCGTGTAGAAACGCTAGCCGCGTTTCCATTACCATTCAAATTGCGCAAATTACAATTGTGAAATGTTTACTTGTTTACCTCCTTTCCATACAGTTTACTTTGCTTATGGCCACTCGGCTGAtgcttgtgtttatttcagCAACGGCAGGCAGTTTTCTGAAGTATCTTTCCATGCTGCTTCTGTAAAGATACACTCATACGCCtccttttgaaataaatgcatcaaatcTCACCAAAAACTGTTGCCATGACTTATCACGAAAGGCGAAAGGGTTACGTTTCAGTCACATAACACTGGTTAATGGGAACGCCATCATTTCTCAATACTTACTTaacaacatttataaaatatcgcTAAAATGTTGCGGAAATCTGTAATGGAAGCGCTGCTAGTTTCGACCTCATGCAAAGTTGTAACCTATTGACCCTTCGCCAAGAACTGATTTGACAGGCGATCCAGCCGGTCATAATGCTGAATCTTCCAACATATCAGTAGATTAACTTCTGCAgtctcaaattaaaaaaaaggcttgTACTGACATCTAAATAAAACACGTCCTGATGGTCATTCATGTATTATATGACGCTTTAAAAGGTATCAAAAGAGGTCTTTTAAAGACATAGCAGTAGTAACTAAGGGGGGCAGGCTTTTGCAAAGGGCCAAATTCCAAACAACCACAAATTTGCACCAAGAAATAAATGTGACACACTTTAACACCAGAAAAGTGCATTTAGAAAGTAAACGGGGTTTGTTgcgatttttttacatttttttttatgctgactAATGTCAAAAACACATCTTTCGGACATCGTTCAGGGCGTAgaattgtaaatatgtttttataccAGTACTCTCTGTAAGAATTGTTGAATTATCTGCTCAACATGTGATGTCTATTTAAGGTGCAATTATCTAATAAATGGGAAATACAACAACCCAGCCGCCAA

Function

symbol description
si:dkey-90l8.3 Predicted to enable metal ion binding activity.

NR:

description
LIM domain transcription factor LMO4-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246065.1 True 2433 mRNA 0.46 5 20690830 20696690

Neighbor

gene id symbol gene type direction distance location
bcl2l16 bcl2l16,LOC107714610,LOC107556213,LOC107698085,LOC107721090,LOC107678407 coding downstream 26301 20662169 ~ 20664529 (-)
adgrd2 LOC107721081,LOC107678382,LOC107563844,LOC107570012,LOC107714589 coding downstream 76533 20592465 ~ 20614297 (-)
chmp4bb chmp4bb,LOC107756851,LOC107691553,LOC107702881,LOC107566963,LOC107573971 coding downstream 221925 20465898 ~ 20468905 (-)
LOC122350494 eif2s2,if2b,LOC107566961,LOC107756850,LOC107739644,LOC107691551,LOC107573966 coding downstream 226621 20460129 ~ 20464209 (-)
ywhabb ywhabb,LOC107702878,LOC107573968,LOC107756849,LOC107691552,LOC103023259 coding downstream 231802 20454630 ~ 20459028 (-)
ccn1l2 LOC107698087,LOC107556215,LOC107563854,LOC107678465,LOC107714581,LOC107721104 coding upstream 3333 20700023 ~ 20707196 (-)
stambpb stambpb,LOC107714511,LOC107721092,LOC107678409,LOC107563848,LOC103470718 coding upstream 51749 20748439 ~ 20756847 (-)
tgoln2 NA coding upstream 61118 20757808 ~ 20762487 (-)
tcf7l1b tcf7l1,tcf7l1b,LOC107721095,LOC107556226,LOC107747791,LOC107563849,LOC107698102,LOC108265410,LOC106585616 coding upstream 75003 20771693 ~ 20822052 (-)
LOC122350675 cox5b1,LOC107698109,LOC107556219,LOC107747804,LOC108426657,LOC107602047,LOC107718706 coding upstream 220338 20917028 ~ 20919100 (-)
G65704 NA non-coding downstream 79907 20610562 ~ 20610923 (-)
G65697 NA non-coding downstream 120537 20567158 ~ 20570293 (-)
G65696 nr6a1a,nr6a1,LOC107721088,LOC107698081 non-coding downstream 130859 20559631 ~ 20559971 (-)
LOC122349883 NA non-coding downstream 184857 20491849 ~ 20505973 (-)
G65682 NA non-coding downstream 226074 20464551 ~ 20464756 (-)
G65717 NA non-coding upstream 26576 20723266 ~ 20725454 (-)
G65732 NA non-coding upstream 184332 20881022 ~ 20881433 (-)
G65728 dbnl non-coding upstream 189534 20886224 ~ 20892629 (-)
G65750 NA non-coding upstream 229921 20926611 ~ 20926980 (-)
G65752 NA non-coding upstream 231572 20928262 ~ 20928477 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other downstream 269534 20415065 ~ 20421296 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 556485 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 1257539 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 1488453 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1642861 19023713 ~ 19047969 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 22250 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 318303 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1074778 21771468 ~ 21776620 (-)
G66090 NA other upstream 1088014 21784704 ~ 22254189 (-)
G66119 gfpt1,LOC107710818,LOC107752562,LOC107678434,LOC102792631 other upstream 1317283 22013973 ~ 22025791 (-)

Expression


Co-expression Network