slc7a4 (slc7a4,LOC106579925)


Basic Information

Item Value
gene id slc7a4
gene name slc7a4,LOC106579925
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19249721 ~ 19256112 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246098.1
ATGGCGTCATGTGTCGGCTGCTCTCCGGTGGTGAGGTTCTGTCAGAAACTGAACAGGCTGAAGACGCTGGAGGAGGACGTGATGGCGACGTCACTCAAGCGCTGTCTGTCCACAGTGGACCTCGCGCTGCTCGGTGTTGGAGGAATGGTGGGCTCGGGCCTGTATGTTCTCACAGGAACTGTTGCTAAAGACACCGCAGGGCCCGCTGTAGTAGTGTCTTTCCTCATAGCCGGAGTAGCGTCACTCATGGCAGCGCTGTGCTATGCTGAGTTTGGTGCCCGTGTACCAAAGACAGGCTCTGCCTACATGTTTACATACGTCTCTGTTGGGGAGATCTGGGCGTTCCTCATTGGCTGGAATGTGATCTTGGAGTATATGATTGGCGGGGCAGCAGTAGCTCGTGCGTGGagtggatatctggactctatTTTCAATCACCGCATCCAGAACTTCACCGAGAGTCATGTGATGCGCTGGGATGTGCCCTTCATTGCTCATTACCCAGACCTCCTAGCGGCTGGCATTCTCCTAGTAGCTTCCTTCTTCATTTCATTTGGCGTTCGCGTCTCCTCTTGGCTCAACCACATCTTCTCAGCCATCAGTATGGCAGTCATTGCCTTTATCTTGGTTTTTGCCGTACTGGCCGATCCAGTTAACTGGAGCGCTCGGGAGGGAGGCTTTGCCCCCTTCGGACTTTCAGGTGTCCTGGCGGGAACTGCGACGTGCTTCTATGCCTTCGTCGGCTTTGACGTGATAGCGGCTTCCAGCGAGGAGGCCAGCAATCCTCAGAGGGCTGTTCCTGCAGCGACTGCCATCTCCCTGGGCCTGGCAGCCACGGCTTATGTGCTGGTGTCCACAGTTCTCACGCTGATGGTTCCGTGGCATACGCTCGACCCTAACTCAGCTCTCTCAGATGCCTTCTTCAGACGAGGATATAGCTGGGCCGGGTTCATCGTGGCTGTAGGATCAATCTGCGCCATGAACACTGTGTTGCTCAGCAACCTCTTCTCTCTCCCGCGGATCGTGTATGCTATGGCTGAGGATGGCCTTTTCTTCTCTGTCTTTTCCCGTGTCAACCCTGTAACCAAAGTCCCGGTGATCGCCATTCTCGTTTTCGGCAGCCTTATGGCAATCCTTGCCCTCATCTTTGATCTGGAAGCACTGGTTCAGTTCCTCTCTATTGGCACTCTGCTTGCTTACACGTTTGTAGCGGCCAGTGTCATAGTGCTCCGCTTCCAGCCGGATAAAAGCAGCGGGAGCTCAGGAGGAGGTGGACTCAAGACAGACGCTTCATCCACACCTTCGATAAACCAGCCTGGACAGCAAGTGGACCCGTCCGCGGTGACGAACGAGACCCAGACCTTTGCGCAGGACGGTGGAGAGATGAAGGAGTATGAGTCCTTCTCagataaacttcagctggtgGAGCGGCAGAAGACGGTGAAGGAGAGACGGGCTCCTGGCGTGCTGAAGGCTGGCTGGGAGCCGTATCTGGGCAGGATACTGGGGGACTGCGAGCCAGGCGAGGTGGTGGCGTTCTCTGTGCTCGCTCTGATGGTCAGTGGAGTCTCTCTTTGTGCTGTGCTGGTGTTCGGGATCAACCAGCTGAATCTGCCTGTGTGGAGCTTCACCCTGCTGCTGGTCATCTTCAGTCTGGTCTTCCTGCTCAGTCTGGCTCTCATCTGGGTCCATGAACAGCAGCCCAGTCAGAAGACTTTTCAGgTTCCTCTGGTGCCATTTATTCCTGGCTTCAGCATTCTTCTAAATGTATTTCTCATGCTGAAGTTAAGTCCTCTCACCTGGATCCGTTTCACCATATGGGTCGCAGCAGGTCTTCTGGTGTATTTCGGGTATGGTATATGGCACAGTAAGGAGGGTTTGCGGGAGCAGCAGGGGCAGGACGTGGCGGCGCGTTACGTGGTCCTTCCCAGCGGCAGCCTGGTGGAGACCGTCCAGAACGTCCAGCCTGAAGGACACACACTCAGCGCGCACACACCGCCCCACGACAACCCACCTGTCAGCAGATGATCTGATCACGCTGAGGTGTGTTTACAGTACACCTGcatgcctgcctgttctacttGCTTTTCTTCCTCTTCAGTTTACTGACAACATGTCAGGATAAACCGTTAATCAAAAAAGATGGTTTGAAGAAATATTCCAGGTACAGTAAtatttgtggcataatgttgGTTACCACAAAAAAAGGGTAAATGGGGTGATTTTGGAgcattttcttgtttgtttttttgtcttgttattataattaagtcaccataataattaaatacaattttaatatatataatataattttaatataaataatttttgtggtGATCATTattatgccacaaatgctgCTAATTAGTCTTATCTTGTACTGACCCCAGCATACTTTTTTGTATTGAAGCGACTAGTATTAACTTCCTTGTTCACCATCCTAATCAACAACGGGccgtttctttctctttctttcttacatAATATATCTACTGTGTTTAGCTACTTTTAGCAGCCATGCTGACTcgaatgtaaattatatatgagAGTCAGCAAAGTGCACCATAACGCCGCGGCCCAACTGTATCCAGCATCTCCATTGTCTTTTATGGTGTTTACATAGAGCCGAAGGGATCCCCACTGCTGCTCTGTGAAAGCTGAAACCTTTAAGAGAAGCTGCTGTTTATCATTCAAACACTGATGTAAGTTGCCGCTTGAGCATATTCTAAAGGAAACCTTATTCGTGTAGTCTAAACAACGAAACGCTCAGATATGATTTTTCTACAATGCAAGAGATTGTGGCTGTGATTTGGAGAGCAGTTACTGTATACCggatatttttattgtttctgcaTGAATGCTGACAATCACTGGTGGTTAGACAGTAAACATGAGGTCTTAGCGAATGCTGTTAAGAGAGATCATGCGGTTCTACTCAAATCTTGTCTCCTTTTCCCATCAcggcccacacacacacttcgaTTGTCATAATTTAACACAAGTCAGAAGATCACGTGAATGTACCTAAACATTactatacgcacacacacattatttttgcagtctgggtcacaaacacacagcctaAGCACACGCTAACTGGCTCAACATGTTTGGTTTTCTATCACTTCTCTGCACCTCTTtactcattatttatttttattttagaataccGCATAActgcgtatttatttatttttccgtACATACTTTAACCAAAATCacgttttaataatgttaattattcgTGATGTTAAAaagaatcctttttttttttctttgtacgATAAACAGCATGAACCTAACTGGGTAATCATGTTTCATCTGTGTCCGCTGACACACCTCACCGGCCTTACCTTTGCAAACACACTAACCCTGGTGTTCACTAATCCTTCTTCTCACATCTCATGTGACTTTCACACACACCGAACTGCCCTTATTATCACAAACACTGACAGAGCTGGAGCATTTACTTAGAACTGTTACCTTTAAAACtagctgtttatttttagctgCCGGGtcagtgacatttattttgttttgcttggtttgttttttttgtccagaactattatttatttgaaaatgcatttataatggcTTTAAtgtaccatgtttttttttttctaaaaaacatGGTAGCGTGAAAAAGGTTCATTTACCAAAATCTtgcctaaaatgaaaaaaatattattatgacaACTGTCCCGAAATCAGAAAGAAAGGGGAAAgccttatttaaaaatgtaattattaaacaataactaatattttattattttaaagcactcCTCCCCTTTTTCGAACACTTTTAATTGTCATTGGCCCAGCTCCATTTGTAAAAATTGAGTTTTAGAATTTGCAATGACCCGTATAAttaactcattttaattttatagaataatacaattataatcaCATTCTTCAGAATTTCTGGCACCCTTGATCACCACCGTGCCCTTCTGAGTGCTTCAGTTTGTGTTGCTCTCAGTGAACCGTCCCTGTTAGCAGTAAGTATAAATTTGCCTTGAAAGGGTACATGTAAGTCAATGAATGATAGTCATTTATTAATAGTCACCAATAGAATATTGACAAAAGCACAGAACAAATCCTTTTCAGCACAAGCACAGCAGAAGAGTGCGGTTTATATGCAGTGGATGCTGGATATTATGCAGAAGCAAAGATGAGATTTTTCCCCTCACAGGCCCCTGTAAT

Function

symbol description
slc7a4 Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SLC7A4 (solute carrier family 7 member 4).

NR:

description
PREDICTED: cationic amino acid transporter 4

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13866 SLC7A4; solute carrier family 7 (cationic amino acid transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246098.1 True 4218 mRNA 0.45 6 19249721 19256112

Neighbor

gene id symbol gene type direction distance location
LOC122349950 adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107550971,LOC107753091,LOC107703147 coding upstream 49640 19196450 ~ 19200081 (+)
LOC122350746 pqbp1,LOC107702814,LOC107683912,LOC107747222 coding upstream 142851 19105053 ~ 19106870 (+)
LOC122350065 pold2,LOC107747204 coding upstream 145874 19100306 ~ 19103847 (+)
LOC122351071 slc7a4 coding upstream 159461 19081597 ~ 19090260 (+)
glt1d1 glt1d1,LOC107676618,LOC107659266 coding upstream 226429 18996469 ~ 19023292 (+)
sf3a1 sf3a1,LOC107550953,LOC107564451 coding downstream 5829 19261941 ~ 19267105 (+)
pold2 pold2,LOC107747204 coding downstream 11240 19267352 ~ 19270870 (+)
LOC122349946 LOC107747205,LOC107683889,LOC556872 coding downstream 28605 19284717 ~ 19346575 (+)
iqsec2b iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC107570507,LOC107550910,LOC107725888 coding downstream 91790 19347902 ~ 19405484 (+)
kdm5c LOC107747206,LOC107550909,LOC107683899,LOC107570512,LOC107724909,LOC107702826 coding downstream 150452 19406564 ~ 19423812 (+)
G65073 LOC107564452,LOC107733255,LOC107755688,LOC107702821,LOC107733264,LOC107668424,LOC553487,LOC107564453 non-coding upstream 15121 19011933 ~ 19234600 (+)
G65074 NA non-coding upstream 16337 19224569 ~ 19233384 (+)
G65094 NA non-coding upstream 37596 19049282 ~ 19212125 (+)
G64910 NA non-coding upstream 575377 18673967 ~ 18674344 (+)
G64889 NA non-coding upstream 631537 18616978 ~ 18618184 (+)
G65119 NA non-coding downstream 149544 19405656 ~ 19482043 (+)
G65111 NA non-coding downstream 167907 19424019 ~ 19425722 (+)
G65267 NA non-coding downstream 301432 19557544 ~ 19558486 (+)
G65268 NA non-coding downstream 302761 19558873 ~ 19559169 (+)
G65284 NA non-coding downstream 438268 19694380 ~ 19752601 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other upstream 48034 19199988 ~ 19201687 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other upstream 97416 19119944 ~ 19152305 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other upstream 153650 19094947 ~ 19096071 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other upstream 527475 18695454 ~ 18722246 (+)
gpat2 gpat2,LOC107712449,LOC107550920,LOC107657318 other upstream 649237 18565699 ~ 18600484 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other downstream 15980 19272092 ~ 19273770 (+)
rfk rfk,LOC107740987,LOC107723557 other downstream 773922 20030034 ~ 20033607 (+)
timm17b timm17b,LOC107722912 other downstream 879007 20135119 ~ 20139364 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other downstream 1167169 20423281 ~ 20431832 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other downstream 1702488 20958600 ~ 20972040 (+)

Expression


Co-expression Network