gpkow (gpkow,LOC107683890,LOC107702823,LOC107575438)


Basic Information

Item Value
gene id gpkow
gene name gpkow,LOC107683890,LOC107702823,LOC107575438
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19274956 ~ 19283441 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246101.1
TGACTACAATCACACAACAAACATGGCGTCGCCGGATCGGCATCAAGAGCGTGAATCACTGAAGAATAAAACTAGTCAAGATGACGGAGGAAAAAAATCTGGTCCAATATCTTTCGGTTTTAGTAAAACATTGATCAAGGTTAAGTCCGGAAAAGCGGAGGAGCGAGATTATTTAGTTGAAGTCGAAGGAAAAGAACTTAAAGGAACCAAACCGGTGGAGAAACCGAAGGAGCTGGTCATCCCGTTGATCCACAAGAACCGCTGGTACCGGCAGGATGCTGAGCGAGGCGACAAGAGCAGCGAAGACAAGAGCAGAGGTCCGTCCCGGGAGGAGCAGGACACCGTGGAGTCTCTGGCCGTCAAAGAACTCATCGAAGAGTCTCAAAAGCACCAGGAGAGATGGAAGAACGGACAGCAGATGGATCCAAACTTCGCCATTCCTCTTCTCATGCAGAACCAGGCCCCTGAGGGATTTGAGGATGGAGACAAAGTCAAAGTGGATTTGCGACCAGAGTCGTCCACAGAGGCTGACTATGAACGTGTTCCTGTGGAGGCTTATGGGCTGGCCATGCTGAAGGGAATGGGCTGGAAGCAAGGAGAAGGAATCGGACGCACGTTTAAACAAGATGTAAAGCCCATAGAGCATGAGTTAAGGCCTAAAGGGCTTGGTTTGGGAGCAGATCGCTCTGCTATTAAAGACCTAGAGCCCGGCGTCCCCAAGAGACCCCCTAAACCCGGTGAGGAGAGGAAAGAAGAGGAGACGCTGGTTCTGGGACCTGGAGGATGTGTGCAGGTCCTGGCAGGAGCACACAAAGACCTGTATGGGAAGATCGAGGGAGTGGATCCAGATAACGCCAGAGTTGTAGTCAAACTGGCCATCGGAGGGAAGACGGTTACCATTATTCAGCACTCTTTAAAATTAGTCACCCGTAAGGAATACGACAAATACAGCAAAGACCTCAGTCGTCTTAGTAAAGCACACaaggacaaagagagagaaaaagagcggGAACAGCAGAGGGAACGGGAGGAGAGGTTAAACGGCAAAGATGACAGAGGAAAGACGGACAGGGATCGAGAACGGGAGAGGAACCGAGACAGAGATCAGAAGAAACGCAAACACAGAGACTCAAGTACAGACAGAGAGAAGCATCCGCCAGTAAAGGAGTCGAGGCCCACACCCAGCCCCTCGTGGCTCCAGAGAGACCTCCGTGTGCGATTCATAGATAAAGCATTCAAAGGAGGCAGATACTACAACTCTAAGATGAGAATCGAGGACGTCTTGACGCCTCACACCTGTGTGTGTCGTACCGAGGAGGGCAGACTGCTGGACGATATAAGACAGAAGATGCTGGAGACCATTGTACCCAAGAACGACTCGGAGTATATTATGGTGGTTCTGGGAGAACACAGAGGACAGGTGGGCCGCATCCTGAAGCGCGACCGAGAGAAGTGCCGAGCCATGGTTCAGCTGGAGCGGTACGAGGAGCAGGTGTTCGCTCTCGACTACGACTCCATCTGTCATTACGTGGGCGGAACTGAACACTGAGAGGCCGAATGAATACGACGCGCCCTTCATCATCCCAGTCTCATTCTGACAGCAACACGAGTTGTGATTGGCCGCTTTTCCCTACATTGCTAGAGACCAACATATCGGATGcatcacattttttaatacaaccaagacttaatttattttgctaGTTGTGgtggtgtatttttaaatgcgaGTTTAGAGCCAAATGTGGAGTCATAACTTCTTTGTTGCGCTGTGACAGTGCCGTATCTGTATAACTGGGTGGATCTTAAAGCAACATAATGTCCTGTTAATAAGTCTATGTTGCCAAGTGAAGAAGTAGTGCCATGTTTCTCTCCGTATAGTGATAACGGACGTCTACACTGGTCGTCGGTTCAGGAGCATCGGCGTTTGAGTGTCAGggaatttacatttcaacccAATGTAATTAGGGATAAAAATGTCACTGCCAGTTAATTAGGATCAAAACACTTCTGAAACTCTGCTCTGGCTTCTTAGTCCAATAAAGATGTCGATTCATGTTCAGTCTATGTACAGAGTTATACACAAGCCACCTAGAATTTCCACTTGTTAtccttttataataaaatgttcaaagtCCTTCA

Function

symbol description
gpkow Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human GPKOW (G-patch domain and KOW motifs).

NR:

description
PREDICTED: G patch domain and KOW motifs-containing protein

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13101 GPKOW; G patch domain and KOW motifs-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246101.1 True 2142 mRNA 0.48 12 19274956 19283441

Neighbor

gene id symbol gene type direction distance location
ccdc157 ccdc157 coding downstream 13131 19257900 ~ 19261825 (-)
LOC122349957 LOC107668424,LOC107564453 coding downstream 40299 19232671 ~ 19234657 (-)
LOC122349953 LOC107564452 coding downstream 45086 19225286 ~ 19229870 (-)
LOC122349956 LOC107564454 coding downstream 56321 19216045 ~ 19218635 (-)
LOC122349954 LOC107564459,LOC107659264 coding downstream 59493 19212581 ~ 19215463 (-)
LOC122350099 renbp,LOC107747208,LOC107683888,LOC107702837,LOC107725049 coding upstream 140551 19423992 ~ 19428532 (-)
zgc:162200 zgc:162200,LOC107683887,LOC107702829,LOC107747207,LOC107724826,LOC107570514,LOC107550908 coding upstream 150588 19434029 ~ 19449741 (-)
rbm39b rbm39b,LOC107683885,LOC107747212,LOC107550952,LOC107570509,LOC107725799 coding upstream 197826 19481267 ~ 19492499 (-)
rh50 rh50,LOC107724755,LOC107570510,LOC107702833,LOC107683883,LOC107550951,LOC107747214 coding upstream 210696 19494137 ~ 19499408 (-)
slc12a5b slc12a5b,LOC107550951,LOC107747216,LOC107683884,LOC107702850,LOC107725712 coding upstream 216116 19499557 ~ 19544031 (-)
G65201 NA non-coding downstream 6766 19100929 ~ 19268190 (-)
G65199 NA non-coding downstream 7851 19099533 ~ 19267105 (-)
G65217 sf3a1,LOC106585510 non-coding downstream 11651 19262737 ~ 19263305 (-)
G65180 NA non-coding downstream 17926 19086572 ~ 19257030 (-)
G65194 slc7a4 non-coding downstream 24272 19081648 ~ 19250684 (-)
G65244 NA non-coding upstream 123314 19406755 ~ 19409040 (-)
LOC122349935 NA non-coding upstream 424656 19708097 ~ 19744650 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding upstream 819896 20103337 ~ 20104000 (-)
LOC122350956 NA non-coding upstream 853162 20136603 ~ 20140200 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding upstream 882615 20166056 ~ 20166372 (-)
LOC122351133 NA other downstream 72579 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 226987 19023713 ~ 19047969 (-)
G65033 NA other downstream 714622 18559667 ~ 18560334 (-)
tbc1d10aa tbc1d10aa,LOC107657331,LOC107712481,LOC107550973,LOC107753095,LOC107703173,LOC107554420 other downstream 873018 18390663 ~ 18401938 (-)
G64967 NA other downstream 1117413 18155135 ~ 18157543 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other upstream 145297 19428738 ~ 19433291 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other upstream 834566 20118007 ~ 20134345 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 1131624 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 1435499 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 1731552 21014993 ~ 21025831 (-)

Expression


Co-expression Network