LOC122349953 (LOC107564452)


Basic Information

Item Value
gene id LOC122349953
gene name LOC107564452
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19225286 ~ 19229870 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246105.1
ttggctggttgTTTTAGACGTTCACTTCATGAACAAAGTATCTCAGGATTGCTCTTCAGTTGGGACAGTCACAGAGAGAAACCATGTCACTGCCGAGGGTCTTGAGTTTTCATCTCATATTGATGCTGTCTGCATTCACTGGAGCAGCTGATGGATACTACAATTCTGGGTGGAAAGAATGCATCTACAGCTCCCATGATCTCAGTGACATGGTGATGATTGTTAACTATATCTTCAATAAAGATGTGTTCTTACAGTTCAACAGCACTGTGGGGGAGTTTGTGGGATACACTGAACTTGGAGTAAAGAACGCACAGCGATTGAACAGTGATGGCACAGCGCAGCAAGAGAGAGCTGAGGTGGAGAGATTCTGTAAACATAATGCTAAAAACAGACAGAGCGCTATCGCTGATAAAACAGTTGCACCACAGGTTAAGCTCAGTTCAGTAAATCCGGCCGGTAGTAGACATCCAGCTGTGTTGATGTGCAGCGCATACCACTTTTACCCACAACGGATCAAAGTGACCTGGTTGAAAGACAACACACCTGTGAAGTCTGATGTGACCTCAACTGAAGAGCTGCCTAACGGGGACTGGTACTACCAGATCCACTCTGAGCTGGAGTACACCCCTAAATCTGGAGAGAAGATCTCCTGCATGGTGGATCACGCTGGgttaaaaaaacccatcatCGTAGACTGGGATCCGTCTCTGCCTGAGTCTGAGAGGAATAAAATCGCCATCGGAGCCTCTGGTCTGGTTCTGGGAGTCATCATCGCAGCCGCTGGACTCATTTACTACAAGAAGAAATCAGCAGGGAGGATCCTGGTACCAACCTAAGGATGGTACGACTGACTGGACATGATTCATTGGTGGACAACTCCCttatcttttatgttttacttttaaaaattaaaaacatttgaaaaataaaacaatacaacacatctaataaatgtgtttgatatttgtagcttttttattaaattgcaatGATGACATAATGAACTGTAAATTATAGAGATTATATAGAATCATGTAAATCGTCATTCTTGCTGGTTTTTTCCCCACTAATTAATGCATAGAATAAAGAGTTCCAGAATAACAGAACATatcttttctgttctttattgtatattataaattaatttttgcagTCTTACATGTAATATGTttgatagaaaatatattttaaatactattactGCATAAATAAGACCATGGacaatttcagatttttcttaTCATTTATTCTGACAATGATTCCTCTGCTTTATTTAATGTCATCAAAATATCCtcaacaatgttttgtttttcataaacatCTGAAACATTATTTGGTTCTGTTAAGctcttaataaatatttctttacaaaa
>XM_043246106.1
ttggctggttgTTTTAGACGTTCACTTCATGAACAAAGTATCTCAGGATTGCTCTTCAGTTGGGACAGTCACAGAGAGAAACCATGTCACTGCCGAGGGTCTTGAGTTTTCATCTCATATTGATGCTGTCTGCATTCACTGGAGCAGCTGATGGATACTACAATTCTGGGTGGAAAGAATGCATCTACAGCTCCCATGATCTCAGTGACATGGTGATGATTGTTAACTATATCTTCAATAAAGATGTGTTCTTACAGTTCAACAGCACTGTGGGGGAGTTTGTGGGATACACTGAACTTGGAGTAAAGAACGCACAGCGATTGAACAGTGATGGCACAGCGCAGCAAGAGAGAGCTGAGGTGGAGAGATTCTGTAAACATAATGCTAAAAACAGACAGAGCGCTATCGCTGATAAAACAGTTGCACCACAGGTTAAGCTCAGTTCAGTAAATCCGGCCGGTAGTAGACATCCAGCTGTGTTGATGTGCAGCGCATACCACTTTTACCCACAACGGATCAAAGTGACCTGGTTGAAAGACAACACACCTGTGAAGTCTGATGTGACCTCAACTGAAGAGCTGCCTAACGGGGACTGGTACTACCAGATCCACTCTGAGCTGGAGTACACCCCTAAATCTGGAGAGAAGATCTCCTGCATGGTGGATCACGCTGGgttaaaaaaacccatcatCGTAGACTGGGATCCGTCTCTGCCTGAGTCTGAGAGGAATAAAATCGCCATCGGAGCCTCTGGTCTGGTTCTGGGAGTCATCATCGCAGCCGCTGGACTCATTTACTACAAGAAGAAATCAGCAGGGAGGATCCTGGTACCAACCTAAGGATGGTGGAagatctcacacacacctcttccGGAAATGCTGTATAATTCAACTACTCTGATGACGCCTttcaaactcctgaagtgtttccatTTTTGGTGTGCCATCTGAGGCACAGAATAAACTGCCTGATCTagtttaaaaagagaaagagtgacCTATTGGACAAATATCGTCCTAGCAAAGAGAATTACATATTGAAattaccaaaataaatgaatgaataaatcta

Function

NR:

description
PREDICTED: H-2 class II histocompatibility antigen, E-S beta chain-like

GO:

id name namespace
GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II biological_process
GO:0006955 immune response biological_process
GO:0042613 MHC class II protein complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246105.1 True 1376 mRNA 0.39 6 19227295 19229870
XM_043246106.1 False 1071 mRNA 0.45 6 19225286 19229870

Neighbor

gene id symbol gene type direction distance location
LOC122349956 LOC107564454 coding downstream 6651 19216045 ~ 19218635 (-)
LOC122349954 LOC107564459,LOC107659264 coding downstream 9823 19212581 ~ 19215463 (-)
LOC122349926 gpkow,LOC107683890,LOC107702823,LOC107575438 coding downstream 106224 19111023 ~ 19119062 (-)
LOC122351072 ccdc157 coding downstream 130435 19094535 ~ 19094851 (-)
LOC122350732 ccdc157 coding downstream 131263 19091424 ~ 19094023 (-)
LOC122349957 LOC107668424,LOC107564453 coding upstream 2801 19232671 ~ 19234657 (-)
ccdc157 ccdc157 coding upstream 28030 19257900 ~ 19261825 (-)
gpkow gpkow,LOC107683890,LOC107702823,LOC107575438 coding upstream 45086 19274956 ~ 19283441 (-)
LOC122350099 renbp,LOC107747208,LOC107683888,LOC107702837,LOC107725049 coding upstream 194122 19423992 ~ 19428532 (-)
zgc:162200 zgc:162200,LOC107683887,LOC107702829,LOC107747207,LOC107724826,LOC107570514,LOC107550908 coding upstream 204159 19434029 ~ 19449741 (-)
G65175 NA non-coding downstream 228593 18965288 ~ 18996693 (-)
G65157 NA non-coding downstream 496144 18727777 ~ 18729142 (-)
G65055 NA non-coding downstream 529936 18695050 ~ 18695350 (-)
G65038 LOC107550967,LOC107712486,LOC107657328,LOC107753142,LOC107703177,LOC107554415 non-coding downstream 610389 18612603 ~ 18614897 (-)
G65012 dusp2,LOC107657330,LOC107550972,LOC107712482,LOC107753144,LOC107554416,LOC107703175,LOC108265928 non-coding downstream 765977 18453581 ~ 18459309 (-)
G65217 sf3a1,LOC106585510 non-coding upstream 32867 19262737 ~ 19263305 (-)
G65244 NA non-coding upstream 176885 19406755 ~ 19409040 (-)
LOC122349935 NA non-coding upstream 478227 19708097 ~ 19744650 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding upstream 873467 20103337 ~ 20104000 (-)
LOC122350956 NA non-coding upstream 906733 20136603 ~ 20140200 (-)
LOC122351133 NA other downstream 22909 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 177317 19023713 ~ 19047969 (-)
G65033 NA other downstream 664952 18559667 ~ 18560334 (-)
tbc1d10aa tbc1d10aa,LOC107657331,LOC107712481,LOC107550973,LOC107753095,LOC107703173,LOC107554420 other downstream 823348 18390663 ~ 18401938 (-)
G64967 NA other downstream 1067743 18155135 ~ 18157543 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other upstream 198868 19428738 ~ 19433291 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other upstream 888137 20118007 ~ 20134345 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 1185195 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 1489070 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 1785123 21014993 ~ 21025831 (-)

Expression


Co-expression Network