LOC122349956 (LOC107564454)


Basic Information

Item Value
gene id LOC122349956
gene name LOC107564454
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19216045 ~ 19218635 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246108.1
TCCGCGAGCAAACGTTGAGTGGATGATGAAGACTAAACCTTGCCTTGTTCTTGTCTGTTAAATATCTCGCAGAAGTTTGTCCGACTCTCTTCAATCAAGATGGCGCTGGACAGAATTCTTACTTTAACCTTTGTTCTCTCCGCTAGCGCTGAAATTGTACACGAATATTTCGGAATTCATGGATGCTCTGAGACGGACGGAGAGGATATGCACGGACTTGACGAAGAGGAGATGTGGCATGCTGACTTCAATCGGAAGAGAGGAGTACTGACATTGCCCGATTTCGCAATTCCTATTGAATTCTATGGTTTTTATGAAGAAAGTGTTATTGAAATGACAGGATGCAAAAGCGATGTAGcctttttgacaaaaatgtttaagaGCCCACCACCGGAAATGGACGCACCGCAGACGTCCGTCTATCCGAAAGACGACGTAGAGCTGGGTGTCCAGAACACCCTCATCTGTCACGTGACCGGCTTCTATCCTCCGTCTCTCAGCATCTCATGGACTAAGAATAACGTTAATGTGACAGAAGGCATAAGTTTAAGCCAGTACCGTCCGAGGGCAGACGGTACCTTCAGCATCTTCTCAACTTTTAAATTTACACCTGCTGAAGGAGATATTTACAGCTGCACGGTGAACCACAGAGCCCTACAAAGTCAACATCAGACCATAACATGGGATGTAGAAGTTGCTCTCCCAAGTGTTGGTCCAGCTGTGTTTTGTGGAGTGGGTCTGACTCTGGGGATGCTGGGAGTCGCTGCTGGAACTTTCTTCCTCATTAAAGGAAACAACTGCTACTGACTATGAATGAGTTCACTGTATTTTTCTCACTGTGTTGTTATATTGGGTGACTTATATACACATGGACGATAACACCATCATGCCTTGAAACTTTTGGAATGCAACAAATAGTTAATTTTCCTATTTACCTTAAAGGCCGTACTGTAGATCTCATTTGTTACTCACGGTGTAACTACTTGTTCATCTGTATCTGTAAAAACGAAAGGAACATGTGATATTTgtttaatacagtaaataaataatgttttatgcctA

Function

NR:

description
PREDICTED: HLA class II histocompatibility antigen, DP alpha 1 chain-like

GO:

id name namespace
GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II biological_process
GO:0006955 immune response biological_process
GO:0042613 MHC class II protein complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246108.1 True 1062 mRNA 0.43 4 19216045 19218635

Neighbor

gene id symbol gene type direction distance location
LOC122349954 LOC107564459,LOC107659264 coding downstream 582 19212581 ~ 19215463 (-)
LOC122349926 gpkow,LOC107683890,LOC107702823,LOC107575438 coding downstream 96983 19111023 ~ 19119062 (-)
LOC122351072 ccdc157 coding downstream 121194 19094535 ~ 19094851 (-)
LOC122350732 ccdc157 coding downstream 122022 19091424 ~ 19094023 (-)
LOC122350795 LOC107564453,LOC107668424,LOC107755688,LOC107733264,LOC107702821 coding downstream 145230 19068794 ~ 19070815 (-)
LOC122349953 LOC107564452 coding upstream 6651 19225286 ~ 19229870 (-)
LOC122349957 LOC107668424,LOC107564453 coding upstream 14036 19232671 ~ 19234657 (-)
ccdc157 ccdc157 coding upstream 39265 19257900 ~ 19261825 (-)
gpkow gpkow,LOC107683890,LOC107702823,LOC107575438 coding upstream 56321 19274956 ~ 19283441 (-)
LOC122350099 renbp,LOC107747208,LOC107683888,LOC107702837,LOC107725049 coding upstream 205357 19423992 ~ 19428532 (-)
G65175 NA non-coding downstream 219352 18965288 ~ 18996693 (-)
G65157 NA non-coding downstream 486903 18727777 ~ 18729142 (-)
G65055 NA non-coding downstream 520695 18695050 ~ 18695350 (-)
G65038 LOC107550967,LOC107712486,LOC107657328,LOC107753142,LOC107703177,LOC107554415 non-coding downstream 601148 18612603 ~ 18614897 (-)
G65012 dusp2,LOC107657330,LOC107550972,LOC107712482,LOC107753144,LOC107554416,LOC107703175,LOC108265928 non-coding downstream 756736 18453581 ~ 18459309 (-)
G65217 sf3a1,LOC106585510 non-coding upstream 44102 19262737 ~ 19263305 (-)
G65244 NA non-coding upstream 188120 19406755 ~ 19409040 (-)
LOC122349935 NA non-coding upstream 489462 19708097 ~ 19744650 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding upstream 884702 20103337 ~ 20104000 (-)
LOC122350956 NA non-coding upstream 917968 20136603 ~ 20140200 (-)
LOC122351133 NA other downstream 13668 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 168076 19023713 ~ 19047969 (-)
G65033 NA other downstream 655711 18559667 ~ 18560334 (-)
tbc1d10aa tbc1d10aa,LOC107657331,LOC107712481,LOC107550973,LOC107753095,LOC107703173,LOC107554420 other downstream 814107 18390663 ~ 18401938 (-)
G64967 NA other downstream 1058502 18155135 ~ 18157543 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other upstream 210103 19428738 ~ 19433291 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other upstream 899372 20118007 ~ 20134345 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 1196430 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 1500305 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 1796358 21014993 ~ 21025831 (-)

Expression


Co-expression Network