bcas2 (bcas2,LOC107664982,LOC107725297,LOC107734517,LOC107674303)


Basic Information

Item Value
gene id bcas2
gene name bcas2,LOC107664982,LOC107725297,LOC107734517,LOC107674303
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5385707 ~ 5390120 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246129.1
TCATAATAGAAGCAGAGCGGGAAGCGTGTGTTTGTTAAGGATGGCAGGACCGGCTTCAGTCGCTGGTGATGTTTTTGTCGACGCTCTGCCTTATTTTGACCAGGGTTATGACGCTCCAGGTGTCAGAGAAGCCGCAGCTGCTTTGGTGGAGGAAGAGACGAGACGATACAGACCAACCAAGAACTACTTGAGCTACCTGTCCACACCGGATTTCTCTGCTTTTGAGACAGAGATCATGAGGAATGAGTTTGAGAGACTAGCTGCTCGTCAGCCCATGGAGCTGCTCAGTATGAAGAGATATGAGCTTCCTGCTCCATCATCTGGGCAGAAGAATGACATCACAGCATGGCAGGACTGTGTCAATAACTCTATGGCACAGCTGGAACATCAGGCAGTGCGCATTGAAAACCTCGAGCTCATGGCTCAGTATGGATCTAATGCCTGGAAGGTGTCTAATGATAACTTGGCCTTAATGATTGACAATGCACAGAAGGAGCTGCAGAAGGCTAGAAAGCAGATACAGGACCTGAACTGGCAGCGCAAAAACGATCAGCTAGCCGGAGGAGCCAAACTACGAGAACTTGAGTCAAACTGGGTGTCGCTTGTTAGTAAGAACTATGAGATCGAGCGAGCCATCGTCCAGCTGGAGAACGAAGTGGCACAGATGAAGCAGCAACAGGGTGATGAGAACAAAGAGAATATTCGACAGGACTTTTAGGAAGAAAACTGTGCAACGCCATCTTGAAACCATCAGACTTTGCTAAAGAAGAGGATCACCAAagtgtggtggtggtggtggtggtgttttattctgttttggtgACGAATGCAGAAAAAAGTCTTTGTAAAACACAACTGAGCAATAGTGTTGTAGTGCAAACAAGAGGGTAAGCTGGTGTATAGTTCATGGTTTTACACCAAAATTAAACAAGACGTCCATTTCAATTCTGGAAATCGGTAACTCACCTTTGTTTACTGTatacatacagtaaaatagttCATGCGGGTGTgttgacatttataataattttgtttatgtACAATAAACTGATGGAcatttagttcatttagattttttgttttactctttgtaatatttcttttttttaaatatacaataaaatgttcaataaaaacTTCA

Function

symbol description
bcas2 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of Prp19 complex and U2-type catalytic step 2 spliceosome. Is expressed in several structures, including alar plate midbrain region; blood; optic vesicle; solid lens vesicle; and ventral mesoderm. Human ortholog(s) of this gene implicated in breast cancer. Orthologous to human BCAS2 (BCAS2 pre-mRNA processing factor).

NR:

description
PREDICTED: pre-mRNA-splicing factor SPF27

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12861 BCAS2; pre-mRNA-splicing factor SPF27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246129.1 True 1141 mRNA 0.43 7 5385707 5390120

Neighbor

gene id symbol gene type direction distance location
trim33 trim33,LOC107725313,LOC107734526,LOC107664979,LOC107570974 coding downstream 1288 5362726 ~ 5384419 (-)
slc66a1 pqlc2,LOC107734535,LOC107674372,LOC107725314,LOC107664981 coding downstream 23722 5353619 ~ 5361985 (-)
si:dkey-8e10.3 si:dkey-8e10.3,LOC107743123,LOC107601742,LOC107674312,LOC107734510,LOC107653415,LOC107584926 coding downstream 525406 4853786 ~ 4860301 (-)
ptpn18 LOC107743092,LOC107653414,LOC107601761,LOC107734536,LOC107674370,LOC107584895 coding downstream 696227 4674326 ~ 4689480 (-)
plxna3 plxna3,LOC107734520,LOC107653403,LOC107743094,LOC107674285,LOC106572068 coding downstream 730238 4510069 ~ 4655469 (-)
dennd2c dennd2c,LOC107665005,LOC107598967,LOC107734514,LOC107674357,LOC107725285,LOC107566809 coding upstream 705 5390825 ~ 5410171 (-)
ampd1 ampd1,LOC107664993 coding upstream 20831 5410951 ~ 5423401 (-)
nras nras,LOC107598969,LOC107725308 coding upstream 33471 5423591 ~ 5431733 (-)
asb13b asb13b,asb13,LOC107725307,LOC107599049,LOC107664994,LOC107734516,LOC106561665 coding upstream 41829 5431949 ~ 5436830 (-)
plekha2 si:ch211-204d2.4,LOC107599050,LOC107725306,LOC107734508,LOC107566813,LOC107683853 coding upstream 47233 5437353 ~ 5443580 (-)
G61476 NA non-coding downstream 19359 5323112 ~ 5366348 (-)
G61478 NA non-coding downstream 33250 5336987 ~ 5352457 (-)
G61459 NA non-coding downstream 119669 5143199 ~ 5266038 (-)
G61216 NA non-coding downstream 380141 4961583 ~ 5005566 (-)
G61215 pim1,LOC107584899,LOC107598956,LOC107734527,LOC107674355,LOC107653400,LOC107725309,LOC107391354 non-coding downstream 382824 5001567 ~ 5002883 (-)
G61502 NA non-coding upstream 180284 5570404 ~ 5573893 (-)
G61507 NA non-coding upstream 192795 5582915 ~ 5584720 (-)
G61525 atp2a2,atp2a2a,LOC107674294,LOC107757297,LOC107557188 non-coding upstream 283521 5673641 ~ 5675178 (-)
G61526 atp2a2,LOC105014188,LOC108444117,LOC107397196,LOC107725304,LOC106585469,LOC106514585 non-coding upstream 285870 5675990 ~ 5676748 (-)
G61519 NA non-coding upstream 295040 5685160 ~ 5687209 (-)
nr1h5 nr1h5,LOC107653410,LOC107598964,LOC107725330,LOC107674374,LOC107734534,LOC107570978 other downstream 34428 5341394 ~ 5351279 (-)
LOC122349940 fnbp1,fnbp1a,LOC107720911,LOC107675683,LOC107661630,LOC107757295,LOC107674371 other downstream 178185 5195752 ~ 5207522 (-)
LOC122350811 NA other downstream 197786 5187254 ~ 5187921 (-)
G61071 LOC107601747,LOC107653424,LOC107734537,LOC107674377,LOC107578221 other downstream 988633 4393213 ~ 4397074 (-)
G61023 NA other downstream 1078208 4300992 ~ 4307499 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other upstream 86093 5476213 ~ 5510943 (-)
c8h9orf116 LOC107757294 other upstream 215052 5605172 ~ 5609572 (-)
G61513 NA other upstream 224209 5614329 ~ 5617664 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other upstream 529841 5919961 ~ 5961106 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other upstream 1033622 6423742 ~ 6442982 (-)

Expression


Co-expression Network