lhx2b (lhx2b,lhx2)


Basic Information

Item Value
gene id lhx2b
gene name lhx2b,lhx2
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2323599 ~ 2331771 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246143.1
AGGCGCGTTGGGTTTGCTCACGTTTGGAGAGGGAAGAGCGCAGGGAACCTCGCCGTCTTCACTGGATTACACAAACCAAAAAGTGTCCTcaactcctcctcctcctcagtcGACATGACAGGACGGCCGCCTCTCTCGACAGAGCAGACCTCGAGATGATTCTCACCCGAGCCGAAGCCTCCTGAAACCGgacggtgtttttttttttttggcgctCGTGCGGAGGAGGCGCAGAGACGCGGATGAAGATATAACCACCGCGGTCGCTTCTCCCAGGCATTTCGggattgtatatatttttttattccccGGCGACGCGATAAcggatttttgtttttttttgtttttgtttttttttgtgtgtttttgagcgcgcgcgcgtgcgtCCGCGTGTGATGACCGCGCTCCGAAAGACGAGAGAGAAAGACTGAAATCGTACGCCGGCGAGCGCGCGTCCGAAATGTGGTGACTGAAAGTTGCTCGAGAAGAAATAGGAGGGTCCGAGTGTCACGCATGTAGAGGGGCTTCGTAGCCGGTACGTCCTCAAAAGCTCCGGAATGCTCTCGTAGGCTAAACCGATCCGTGCTGGGTGCGTGTTTTGCGATCTCGATGCATTTAAAAGAACCTCTCAGAACACGGAGCTGACATTTCTGACAAACGAACGCCGTTTAGACCGATCGGATCCTCCAAACGGGAATTACTTAACGAGAGCGAGAGAGGTCATATGAACTGCACGGGGCTAGAAGTGCGTCTCACGGAAATCTTGGGTTGCGGATCTGACGGAAACACGTGCTATTCGGTCTCATCTGCGGCAGCGATGCTTTTCCACGGTCTGCCCGGAGGCGAGATGCATGGTGTTATGGAAGAAATGGAGCGGAGAGGAAAGAGCGATTCGGCGACTATCAGCTCGGCCATAGATATGGGGGAAACAGAAACGAACATGCCTTCGATCAGCGGGGACCGGGTGGCTCTGTGCGCGGGCTGCGGAGGGAAGATCTCCGACCGCTATTACCTGCTCGCCGTGGACAAGCAGTGGCACATGCGCTGTCTGAAGTGCTGCGAGTGCAAGCTCAACCTGGAGTCTGAACTCACCTGCTTCAGCAAAGACGGAAGCATCTACTGCAAAGAAGACTATTACAGAAGGTTTTCGGTGCAGAGATGTGCCCGGTGCCACCTCGGGATCTCGGCCTCGGAAATGGTCATGAGGGCCAGGGATTTGGTGTACCACTTGAACTGTTTCACCTGCACGACTTGCAACAAAATGCTGACGACTGGGGACCACTTCGGCATGAAAGACAGTCTGGTGTACTGCAGGCTACACTTTGAAACGCTCATCCAGGGAGACTTCCCCACGCATTTCAATCACACGGATGTAGCGCCTAATAAAGGACTGGGCAGCGCGGGCCCTCTAGGACTGTCTTATTATAACGGCGTGAACACGGTGCAGAAGGGCCGGCCCCGAAAGAGGAAGAGCCCGGGGCCCGGAGCGGACTTGGCGGCTTATAACGCAGCTCTGAGCTGCAACGAGAACGATGGCGATCCCATGGACAGAGACTCGCAGTACAGCACCAGCCAGAAGACCAAGCGCATGAGAACGTCGTTTAAACACCATCAGCTGAGGACCATGAAGTCGTATTTTGCCATCAACCACAATCCCGACGCCAAGGATCTGAAACAGCTGGCCCAGAAAACAGGCCTCACCAAGCGTGTCCTGCAGGTCTGGTTCCAGAACGCCCGGGCCAAGTTCAGACGAAACCTCCTGCGCCAGGAGAACACGGGAGTGGACAAGGCCTCGGACGGCTCGACCCTGCCCGGAGGAACGCCGTCCGGACCGGCCTCGGAGATCTCCAACGCCTCCATGAGCCCGTCCAGCACTCCCACCACCCTCACGGACCTGACCAACCCCACGATGCCCACCGTCACCTCCGTACTGACCTCCGTCCCGGGCAGCCTGGACGTCCACGAATGCCGGAGTCCTTCGCAGAGCACCTTAACCAGCCTCTTCTGATGCTCGGATCGAACCTGAAACGTAAACCGATCTACCTGGGCGTTTTTATAACTCCGCTCCCATTTAAGAGACTGAAAAAAACGAGAAACTCTTCGTTTAGAGTATTGCATTTCGGGGCAGACTCAAGTTTCACCGAAGGATCTGTTGATAAGAGACTgatttgcttttacttttttttaatgtcccCCTTCCCGACCGTGTTTACAGAGAGAGACTGAGCCGGGAAACGCGTTCGTCCGTCAACCTCTTATTTATGTTCACGCACAGGAGTCAGTGTGAGGAAACTGGATTATAATGTGAATAATTACAGCGTAACCTAGCCTGACTGTCACGTGCCTTATCCTGCAGCGTAGTCACTGAAGCCCCTTTAGCAACGCTAAACGAACTACGTCAGAAAATGTGTACCTTCATTTGTCGGATGATGAAAACGGTTGAGTTAatcacacgtgcacacacacacacacacacactctcattccAACATATTACCTCACTCAGAAATCACTGGATACGATAGCAGTACATACGAAAACCCCGAAAACACGTTTCATGCACTGGGCGAGAAAAAGCGGCCGTGGAGAGTTTGTACAAAGAAAAAACCTTGATCGGAAACGGCGCCATGTAATGGAGCTCATCACAGACAAACACTGATTTACGGAATGAAACACTTCGGTTAggtgattttttattattattattattttttttttctctcaaccATTAAGATGTGACAGTGTTGGAGACAGGGTAAATGTTTCCATGGTAACCAGAGGCTGCTTGTTGAAATGCTGTACAGTTTTGACAGATTATTGAGAAATTTCGAGTCCACTCCCTGCAGTATCCCCCCTTTGATGTAAATCTTCAgttctgtaaaaaatataaaaaaatgaatcactgtt
>XM_043246144.1
GAAAAGGCGCGTTGGGTTTGCTCACGTTTGGAGAGGGAAGAGCGCAGGGAACCTCGCCGTCTTCACTGGATTACACAAACCAAAAAGTGTCCTcaactcctcctcctcctcagtcGACATGACAGGACGGCCGCCTCTCTCGACAGAGCAGACCTCGAGATGATTCTCACCCGAGCCGAAGCCTCCTGAAACCGgacggtgtttttttttttttggcgctCGTGCGGAGGAGGCGCAGAGACGCGGATGAAGATATAACCACCGCGGTCGCTTCTCCCAGGCATTTCGggattgtatatatttttttattccccGGCGACGCGATAAcggatttttgtttttttttgtttttgtttttttttgtgtgtttttgagcgcgcgcgcgtgcgtCCGCGTGTGATGACCGCGCTCCGAAAGACGAGAGAGAAAGACTGAAATCGTACGCCGGCGAGCGCGCGTCCGAAATGTGGTGACTGAAAGTTGCTCGAGAAGAAATAGGAGGGTCCGAGTGTCACGCATGTAGAGGGGCTTCGTAGCCGGTACGTCCTCAAAAGCTCCGGAATGCTCTCGTAGGCTAAACCGATCCGTGCTGGGTGCGTGTTTTGCGATCTCGATGCATTTAAAAGAACCTCTCAGAACACGGAGCTGACATTTCTGACAAACGAACGCCGTTTAGACCGATCGGATCCTCCAAACGGGAATTACTTAACGAGAGCGAGAGAGGTCATATGAACTGCACGGGGCTAGAAGTGCGTCTCACGGAAATCTTGGGTTGCGGATCTGACGGAAACACGTGCTATTCGGTCTCATCTGCGGCAGCGATGCTTTTCCACGGTCTGCCCGGAGGCGAGATGCATGGTGTTATGGAAGAAATGGAGCGGAGAGGAAAGAGCGATTCGGCGACTATCAGCTCGGCCATAGATATGGGGGAAACAGAAACGAACATGCCTTCGATCAGCGGGGACCGGGTGGCTCTGTGCGCGGGCTGCGGAGGGAAGATCTCCGACCGCTATTACCTGCTCGCCGTGGACAAGCAGTGGCACATGCGCTGTCTGAAGTGCTGCGAGTGCAAGCTCAACCTGGAGTCTGAACTCACCTGCTTCAGCAAAGACGGAAGCATCTACTGCAAAGAAGACTATTACAGGTTTTCGGTGCAGAGATGTGCCCGGTGCCACCTCGGGATCTCGGCCTCGGAAATGGTCATGAGGGCCAGGGATTTGGTGTACCACTTGAACTGTTTCACCTGCACGACTTGCAACAAAATGCTGACGACTGGGGACCACTTCGGCATGAAAGACAGTCTGGTGTACTGCAGGCTACACTTTGAAACGCTCATCCAGGGAGACTTCCCCACGCATTTCAATCACACGGATGTAGCGCCTAATAAAGGACTGGGCAGCGCGGGCCCTCTAGGACTGTCTTATTATAACGGCGTGAACACGGTGCAGAAGGGCCGGCCCCGAAAGAGGAAGAGCCCGGGGCCCGGAGCGGACTTGGCGGCTTATAACGCAGCTCTGAGCTGCAACGAGAACGATGGCGATCCCATGGACAGAGACTCGCAGTACAGCACCAGCCAGAAGACCAAGCGCATGAGAACGTCGTTTAAACACCATCAGCTGAGGACCATGAAGTCGTATTTTGCCATCAACCACAATCCCGACGCCAAGGATCTGAAACAGCTGGCCCAGAAAACAGGCCTCACCAAGCGTGTCCTGCAGGTCTGGTTCCAGAACGCCCGGGCCAAGTTCAGACGAAACCTCCTGCGCCAGGAGAACACGGGAGTGGACAAGGCCTCGGACGGCTCGACCCTGCCCGGAGGAACGCCGTCCGGACCGGCCTCGGAGATCTCCAACGCCTCCATGAGCCCGTCCAGCACTCCCACCACCCTCACGGACCTGACCAACCCCACGATGCCCACCGTCACCTCCGTACTGACCTCCGTCCCGGGCAGCCTGGACGTCCACGAATGCCGGAGTCCTTCGCAGAGCACCTTAACCAGCCTCTTCTGATGCTCGGATCGAACCTGAAACGTAAACCGATCTACCTGGGCGTTTTTATAACTCCGCTCCCATTTAAGAGACTGAAAAAAACGAGAAACTCTTCGTTTAGAGTATTGCATTTCGGGGCAGACTCAAGTTTCACCGAAGGATCTGTTGATAAGAGACTgatttgcttttacttttttttaatgtcccCCTTCCCGACCGTGTTTACAGAGAGAGACTGAGCCGGGAAACGCGTTCGTCCGTCAACCTCTTATTTATGTTCACGCACAGGAGTCAGTGTGAGGAAACTGGATTATAATGTGAATAATTACAGCGTAACCTAGCCTGACTGTCACGTGCCTTATCCTGCAGCGTAGTCACTGAAGCCCCTTTAGCAACGCTAAACGAACTACGTCAGAAAATGTGTACCTTCATTTGTCGGATGATGAAAACGGTTGAGTTAatcacacgtgcacacacacacacacacacactctcattccAACATATTACCTCACTCAGAAATCACTGGATACGATAGCAGTACATACGAAAACCCCGAAAACACGTTTCATGCACTGGGCGAGAAAAAGCGGCCGTGGAGAGTTTGTACAAAGAAAAAACCTTGATCGGAAACGGCGCCATGTAATGGAGCTCATCACAGACAAACACTGATTTACGGAATGAAACACTTCGGTTAggtgattttttattattattattattttttttttctctcaaccATTAAGATGTGACAGTGTTGGAGACAGGGTAAATGTTTCCATGGTAACCAGAGGCTGCTTGTTGAAATGCTGTACAGTTTTGACAGATTATTGAGAAATTTCGAGTCCACTCCCTGCAGTATCCCCCCTTTGATGTAAATCTTCAgttctgtaaaaaatataaaaaaatgaatcactgtt
>XM_043246145.1
AGGCGCGTTGGGTTTGCTCACGTTTGGAGAGGGAAGAGCGCAGGGAACCTCGCCGTCTTCACTGGATTACACAAACCAAAAAGTGTCCTcaactcctcctcctcctcagtcGACATGACAGGACGGCCGCCTCTCTCGACAGAGCAGACCTCGAGATGATTCTCACCCGAGCCGAAGCCTCCTGAAACCGgacggtgtttttttttttttggcgctCGTGCGGAGGAGGCGCAGAGACGCGGATGAAGATATAACCACCGCGGTCGCTTCTCCCAGGCATTTCGggattgtatatatttttttattccccGGCGACGCGATAAcggatttttgtttttttttgtttttgtttttttttgtgtgtttttgagcgcgcgcgcgtgcgtCCGCGTGTGATGACCGCGCTCCGAAAGACGAGAGAGAAAGACTGAAATCGTACGCCGGCGAGCGCGCGTCCGAAATGTGGTGACTGAAAGTTGCTCGAGAAGAAATAGGAGGGTCCGAGTGTCACGCATGTAGAGGGGCTTCGTAGCCGAACATGCCTTCGATCAGCGGGGACCGGGTGGCTCTGTGCGCGGGCTGCGGAGGGAAGATCTCCGACCGCTATTACCTGCTCGCCGTGGACAAGCAGTGGCACATGCGCTGTCTGAAGTGCTGCGAGTGCAAGCTCAACCTGGAGTCTGAACTCACCTGCTTCAGCAAAGACGGAAGCATCTACTGCAAAGAAGACTATTACAGAAGGTTTTCGGTGCAGAGATGTGCCCGGTGCCACCTCGGGATCTCGGCCTCGGAAATGGTCATGAGGGCCAGGGATTTGGTGTACCACTTGAACTGTTTCACCTGCACGACTTGCAACAAAATGCTGACGACTGGGGACCACTTCGGCATGAAAGACAGTCTGGTGTACTGCAGGCTACACTTTGAAACGCTCATCCAGGGAGACTTCCCCACGCATTTCAATCACACGGATGTAGCGCCTAATAAAGGACTGGGCAGCGCGGGCCCTCTAGGACTGTCTTATTATAACGGCGTGAACACGGTGCAGAAGGGCCGGCCCCGAAAGAGGAAGAGCCCGGGGCCCGGAGCGGACTTGGCGGCTTATAACGCAGCTCTGAGCTGCAACGAGAACGATGGCGATCCCATGGACAGAGACTCGCAGTACAGCACCAGCCAGAAGACCAAGCGCATGAGAACGTCGTTTAAACACCATCAGCTGAGGACCATGAAGTCGTATTTTGCCATCAACCACAATCCCGACGCCAAGGATCTGAAACAGCTGGCCCAGAAAACAGGCCTCACCAAGCGTGTCCTGCAGGTCTGGTTCCAGAACGCCCGGGCCAAGTTCAGACGAAACCTCCTGCGCCAGGAGAACACGGGAGTGGACAAGGCCTCGGACGGCTCGACCCTGCCCGGAGGAACGCCGTCCGGACCGGCCTCGGAGATCTCCAACGCCTCCATGAGCCCGTCCAGCACTCCCACCACCCTCACGGACCTGACCAACCCCACGATGCCCACCGTCACCTCCGTACTGACCTCCGTCCCGGGCAGCCTGGACGTCCACGAATGCCGGAGTCCTTCGCAGAGCACCTTAACCAGCCTCTTCTGATGCTCGGATCGAACCTGAAACGTAAACCGATCTACCTGGGCGTTTTTATAACTCCGCTCCCATTTAAGAGACTGAAAAAAACGAGAAACTCTTCGTTTAGAGTATTGCATTTCGGGGCAGACTCAAGTTTCACCGAAGGATCTGTTGATAAGAGACTgatttgcttttacttttttttaatgtcccCCTTCCCGACCGTGTTTACAGAGAGAGACTGAGCCGGGAAACGCGTTCGTCCGTCAACCTCTTATTTATGTTCACGCACAGGAGTCAGTGTGAGGAAACTGGATTATAATGTGAATAATTACAGCGTAACCTAGCCTGACTGTCACGTGCCTTATCCTGCAGCGTAGTCACTGAAGCCCCTTTAGCAACGCTAAACGAACTACGTCAGAAAATGTGTACCTTCATTTGTCGGATGATGAAAACGGTTGAGTTAatcacacgtgcacacacacacacacacacactctcattccAACATATTACCTCACTCAGAAATCACTGGATACGATAGCAGTACATACGAAAACCCCGAAAACACGTTTCATGCACTGGGCGAGAAAAAGCGGCCGTGGAGAGTTTGTACAAAGAAAAAACCTTGATCGGAAACGGCGCCATGTAATGGAGCTCATCACAGACAAACACTGATTTACGGAATGAAACACTTCGGTTAggtgattttttattattattattattttttttttctctcaaccATTAAGATGTGACAGTGTTGGAGACAGGGTAAATGTTTCCATGGTAACCAGAGGCTGCTTGTTGAAATGCTGTACAGTTTTGACAGATTATTGAGAAATTTCGAGTCCACTCCCTGCAGTATCCCCCCTTTGATGTAAATCTTCAgttctgtaaaaaatataaaaaaatgaatcactgtt

Function

symbol description
lhx2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including camera-type eye development; nervous system development; and optomotor response. Predicted to be active in nucleus. Is expressed in several structures, including brain; forebrain neural keel; forebrain neural rod; optic vesicle; and retina. Used to study congenital nystagmus and pathologic nystagmus. Orthologous to human LHX2 (LIM homeobox 2).
lhx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation; positive regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including hair follicle development; maintenance of epithelial cell apical/basal polarity; and nervous system development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: LIM/homeobox protein Lhx2

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0021537 telencephalon development biological_process
GO:0021554 optic nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043010 camera-type eye development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0071632 optomotor response biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09373 LHX2_9; LIM homeobox protein 2/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246143.1 False 2907 mRNA 0.52 5 2323603 2331771
XM_043246144.1 True 2908 mRNA 0.52 5 2323599 2331771
XM_043246145.1 False 2505 mRNA 0.51 5 2323603 2331771

Neighbor

gene id symbol gene type direction distance location
crb2b LOC107754408,LOC107699666,LOC107560064,LOC107568009 coding upstream 120502 2170511 ~ 2203097 (+)
sh3glb2a sh3glb2a,LOC107671032,LOC107754407 coding upstream 171208 2139230 ~ 2152391 (+)
fam102aa fam102aa,LOC107671017,LOC107699668,LOC107752986,LOC107754406,LOC105891604,LOC108430372 coding upstream 189668 2106390 ~ 2133931 (+)
naif1 naif1,LOC107559603,LOC107753004 coding upstream 219693 2096159 ~ 2103906 (+)
si:ch211-51h9.7 NA coding upstream 251930 2069818 ~ 2071669 (+)
LOC122349879 LOC107670988,LOC107552177,LOC107552180,LOC107552179,LOC107670991,LOC107754429,LOC107752990,LOC107553051 coding downstream 93548 2425319 ~ 2428603 (+)
ctu1 ctu1,LOC107752993,LOC107699664,LOC107552165,LOC107754430,LOC107670973 coding downstream 96417 2428188 ~ 2431630 (+)
pxnb pxnb,LOC107670974,LOC107699663,LOC107752988,LOC107553049,LOC107754409,LOC107552183,LOC102784766 coding downstream 100123 2431894 ~ 2464382 (+)
gcn1 gcn1,LOC107552181 coding downstream 133272 2465043 ~ 2508114 (+)
rab35b rab35b,rab35,LOC107699662,LOC107671023,LOC108430363 coding downstream 179018 2510789 ~ 2518882 (+)
G60328 NA non-coding upstream 119289 2192957 ~ 2204310 (+)
G60323 NA non-coding upstream 158357 2163307 ~ 2165242 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding upstream 161555 2159314 ~ 2162044 (+)
G60296 NA non-coding upstream 167205 2153471 ~ 2156394 (+)
G60279 rpl6 non-coding upstream 210266 2041502 ~ 2113333 (+)
G60335 NA non-coding downstream 12165 2343936 ~ 2344169 (+)
G60342 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543 non-coding downstream 76324 2408095 ~ 2422217 (+)
G60347 NA non-coding downstream 189059 2520830 ~ 2524134 (+)
LOC122351006 NA non-coding downstream 225259 2557030 ~ 2559048 (+)
G60361 NA non-coding downstream 278546 2610317 ~ 2612227 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 283763 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 287619 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 303565 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 405228 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 1104795 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1516843 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1593090 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1697532 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 2772799 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 2895181 5226952 ~ 5229608 (+)

Expression


Co-expression Network